Entry: PS00228

Forthcoming changes to the profile format
General information about the entry

Entry name [info] TUBULIN_B_AUTOREG
Accession [info] PS00228
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); MAY-1991 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00200

Name and characterization of the entry

Description [info] Tubulin-beta mRNA autoregulation signal.
Pattern [info]
<M-R-[DE]-[IL].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 488 in 488 different sequences
Number of true positive hits 219 in 219 different sequences
Number of 'unknown' hits 1
Number of false positive hits 268 in 268 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 11
Precision (true positives / (true positives + false positives)) 44.97 %
Recall (true positives / (true positives + false negatives)) 99.10 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
219 sequences

CWP23_ARATH (P80844), TBA_ENCCU   (Q8SRI6), TBB1_ANEPH  (P33630), 
TBB1_ARATH  (P12411), TBB1_BRUPA  (P18241), TBB1_CAEBR  (Q17299), 
TBB1_CAEEL  (P12456), TBB1_CHICK  (P09203), TBB1_COLGL  (P32928), 
TBB1_COLGR  (P22013), TBB1_CYAPA  (Q9ZSW1), TBB1_DROME  (Q24560), 
TBB1_ECHMU  (Q9NFZ7), TBB1_ELEIN  (Q9ZPP0), TBB1_EMENI  (P10653), 
TBB1_GADMO  (Q9YHC3), TBB1_GEOCN  (P32924), TBB1_GLOMM  (Q27U48), 
TBB1_HOMAM  (Q25009), TBB1_HUMAN  (Q9H4B7), TBB1_HYPRU  (P31864), 
TBB1_HYPVI  (Q875L3), TBB1_LUPAL  (P37392), TBB1_MAIZE  (P18025), 
TBB1_MANSE  (O17449), TBB1_MOUSE  (A2AQ07), TBB1_NOTNE  (P36221), 
TBB1_ORYSJ  (Q43594), TBB1_PARTE  (P33188), TBB1_PHYPO  (P07436), 
TBB1_SOLTU  (P46263), TBB1_SOYBN  (P12459), TBB1_SUIBO  (Q6EVK8), 
TBB1_VOLCA  (P11482), TBB1_WHEAT  (Q9ZRB2), TBB2A_HUMAN (Q13885), 
TBB2A_MACFA (Q4R5B3), TBB2A_MOUSE (Q7TMM9), TBB2A_RAT   (P85108), 
TBB2B_BOVIN (Q6B856), TBB2B_HUMAN (Q9BVA1), TBB2B_MOUSE (Q9CWF2), 
TBB2B_RAT   (Q3KRE8), TBB2_ARATH  (Q56YW9), TBB2_CAEEL  (P52275), 
TBB2_CHICK  (P32882), TBB2_COLGL  (P40904), TBB2_COLGR  (P22014), 
TBB2_DAUCA  (Q39697), TBB2_DROER  (P83130), TBB2_DROHY  (P61858), 
TBB2_DROME  (P61857), TBB2_ECHMU  (Q9NFZ6), TBB2_ELEIN  (Q9ZPN9), 
TBB2_EMENI  (P10874), TBB2_ERYPI  (P40905), TBB2_GEOCN  (P32925), 
TBB2_HOMAM  (Q94571), TBB2_HYPRU  (P31863), TBB2_HYPVI  (Q875L2), 
TBB2_LUPAL  (Q40106), TBB2_MAIZE  (P18026), TBB2_ORYSJ  (Q8H7U1), 
TBB2_PHYPO  (P12458), TBB2_SOLTU  (P46264), TBB2_WHEAT  (Q9ZRB1), 
TBB2_XENLA  (P13602), TBB3_ARATH  (Q9ASR0), TBB3_BOVIN  (Q2T9S0), 
TBB3_CHICK  (P09206), TBB3_DROME  (P08841), TBB3_ECHMU  (Q9NFZ5), 
TBB3_ELEIN  (Q9ZPN8), TBB3_GOSHI  (Q6VAF8), TBB3_HUMAN  (Q13509), 
TBB3_MACFA  (Q60HC2), TBB3_MAIZE  (Q43695), TBB3_MOUSE  (Q9ERD7), 
TBB3_OOMCK  (P50261), TBB3_ORYSJ  (Q40665), TBB3_RAT    (Q4QRB4), 
TBB3_SOYBN  (P28551), TBB3_WHEAT  (Q9ZRB0), TBB4A_BOVIN (Q3ZBU7), 
TBB4A_HUMAN (P04350), TBB4A_MACFA (Q4R4X8), TBB4A_MOUSE (Q9D6F9), 
TBB4B_BOVIN (Q3MHM5), TBB4B_HUMAN (P68371), TBB4B_MESAU (P86221), 
TBB4B_MOUSE (P68372), TBB4B_RAT   (Q6P9T8), TBB4_ARATH  (P24636), 
TBB4_CAEEL  (P41937), TBB4_CHICK  (P09652), TBB4_ELEIN  (Q9ZPN7), 
TBB4_MAIZE  (Q41782), TBB4_OOMCK  (P50262), TBB4_ORYSJ  (P45960), 
TBB4_WHEAT  (Q9ZRA9), TBB4_XENLA  (P30883), TBB5_ARATH  (P29513), 
TBB5_BOVIN  (Q2KJD0), TBB5_CHICK  (P09653), TBB5_CRIGR  (P69893), 
TBB5_ECTVR  (P30156), TBB5_GOSHI  (Q6VAF7), TBB5_HUMAN  (P07437), 
TBB5_MACMU  (P69895), TBB5_MAIZE  (Q43697), TBB5_MOUSE  (P99024), 
TBB5_ORYSJ  (P46265), TBB5_PANTR  (Q7JJU6), TBB5_PIG    (Q767L7), 
TBB5_PONAB  (Q5R943), TBB5_RAT    (P69897), TBB5_WHEAT  (Q9ZRA8), 
TBB5_XENLA  (Q91575), TBB5_XENTR  (Q6GLE7), TBB6_ARATH  (P29514), 
TBB6_BOVIN  (Q2HJ81), TBB6_CHICK  (P09207), TBB6_ECTVR  (P30157), 
TBB6_GOSHI  (Q6VAF6), TBB6_HUMAN  (Q9BUF5), TBB6_MAIZE  (Q41783), 
TBB6_MOUSE  (Q922F4), TBB6_ORYSJ  (Q76FS3), TBB7_ARATH  (P29515), 
TBB7_CHICK  (P09244), TBB7_GOSHI  (Q6VAF5), TBB7_MAIZE  (Q41784), 
TBB7_ORYSJ  (P37832), TBB8L_HUMAN (A6NNZ2), TBB8_ARATH  (P29516), 
TBB8_HUMAN  (Q3ZCM7), TBB8_MAIZE  (Q41785), TBB8_ORYSJ  (Q76FS2), 
TBB8_PANTR  (Q8WP14), TBB8_PAPHA  (Q8WP13), TBB9_ARATH  (P29517), 
TBB9_GOSHI  (Q6VAF4), TBBN_GUITH  (Q9SEV2), TBBP_DROME  (Q9VRX3), 
TBB_ACHKL   (P20802), TBB_ACRCH   (P41741), TBB_AJECA   (P41742), 
TBB_ASPFL   (P22012), TBB_ASPFU   (Q4WA70), TBB_ASPOR   (Q2U2U3), 
TBB_ASPPA   (Q00264), TBB_BABBO   (Q04709), TBB_BLUGH   (P16040), 
TBB_BOMMO   (P41385), TBB_BOTFU   (P53373), TBB_CANAX   (P10875), 
TBB_CERBT   (Q3KVN1), TBB_CHLIN   (O04386), TBB_CHLRE   (P04690), 
TBB_CICAR   (Q39445), TBB_COCHE   (Q4R9N3), TBB_COPC7   (P79008), 
TBB_DICDI   (P32256), TBB_EIMTE   (Q27380), TBB_ENCCU   (Q8SS99), 
TBB_ENCHE   (Q24829), TBB_ENCIN   (Q9GSR5), TBB_ENTDO   (P35394), 
TBB_EPITY   (P17938), TBB_EUGGR   (P12457), TBB_EUPCR   (P20365), 
TBB_EUPFO   (Q9N2N6), TBB_EUPOC   (Q08115), TBB_GIAIN   (P05304), 
TBB_GIBFU   (P53374), TBB_GIBZE   (Q4HZS8), TBB_HORVU   (P93176), 
TBB_LEIME   (P21148), TBB_MELLI   (Q9HFQ3), TBB_METAN   (Q52NY7), 
TBB_MYCGR   (Q6QDC9), TBB_MYCPJ   (O42786), TBB_NAEGR   (P34108), 
TBB_NEOCO   (P33127), TBB_NEUCR   (P05220), TBB_ONCGI   (P41387), 
TBB_PARLI   (P11833), TBB_PENDI   (P53375), TBB_PESMI   (Q9UV72), 
TBB_PHANO   (P41799), TBB_PHYCI   (O59837), TBB_PIG     (P02554), 
TBB_PLAF7   (Q7KQL5), TBB_PLAFA   (P14140), TBB_PLAFK   (P14643), 
TBB_PLESA   (Q92268), TBB_PNECA   (P24637), TBB_POLAG   (P22852), 
TBB_PORPU   (P50259), TBB_PSEAM   (Q91240), TBB_PYRYE   (Q84TG9), 
TBB_RHYSE   (P53376), TBB_SCHCO   (P30668), TBB_SCHPO   (P05219), 
TBB_STYLE   (P11857), TBB_TETPY   (P10876), TBB_TETTH   (P41352), 
TBB_THAWE   (Q9LKI8), TBB_TOXGO   (P10878), TBB_TRIRU   (Q5UBX3), 
TBB_TRITR   (O44388), TBB_TRYBR   (P04107), TBB_TRYCR   (P08562), 
TBB_UNCNE   (Q86ZP5), TBB_UROFA   (Q96TU8), TBB_USTMA   (Q4P235), 
TBB_USTVI   (Q8WZE0), TBB_VENIN   (P41388), TBB_YEAST   (P02557)
» More

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

TBB1_PEA    (P29500), TBB2_SOYBN  (P12460)

		
UniProtKB/Swiss-Prot
'Partial' sequences
11 sequences

TBB1_AVESA  (P25862), TBB1_DAUCA  (P20364), TBB2_ANEPH  (P33631), 
TBB2_OOMCK  (P50260), TBB2_PEA    (P29501), TBB3_ANEPH  (P33632), 
TBB3_PEA    (P29502), TBB_HALDI   (P41386), TBB_LYMST   (P18699), 
TBB_LYTPI   (P02556), TBB_STRPU   (P18700)
» More

UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

CE058_HUMAN (C9J3I9)

		
UniProtKB/Swiss-Prot
False positive sequences
268 sequences

ACA12_ARATH (Q9LY77), ACPH_CLOAB  (Q97HJ4), AGOG_PYRFU  (Q8U2D5), 
ALKH_ZYMMO  (Q00384), AMSG_ERWAM  (Q46628), ARGJ_STAS1  (Q4A0N0), 
AROB_SULSO  (Q980I9), ATGT_NATPD  (Q3IR98), ATPD_WOLSU  (Q7MA21), 
BCSE_ECOLI  (P37657), BIOB_METM6  (A9AA75), BIOF_THISH  (B8GTH6), 
BPTA_BORBN  (E4QH55), CAS2A_THET2 (Q745W0), CAS2_THET8  (Q53VV6), 
COBP_PSEAE  (Q9I466), CRCB2_RHOPB (Q214E7), CRCB_METMP  (P61395), 
CRTY_ESCVU  (Q01331), CSPLR_ORYSI (B8AC36), CSPLR_ORYSJ (Q5N794), 
CYNT_PSEAE  (Q9I262), DHYS_PYRAE  (Q8ZT09), DML1_ASHGO  (Q756C7), 
DML1_COCIM  (Q1E2I3), DML1_GIBZE  (Q4IBL8), DML1_KLULA  (Q6CU61), 
DML1_PHANO  (Q0V254), DML1_YARLI  (Q6C6D9), DTXR_CORJK  (Q4JV96), 
ECFT_THEOJ  (D9RZP4), ELYS_HUMAN  (Q8WYP5), FAC15_MYCBO (Q7TYX8), 
FAC15_MYCTU (O53521), FB101_ARATH (Q9ZQM4), FENR_SALAI  (A8M2W8), 
FOLD_ANAMM  (Q5PBL6), FTHS_THEAC  (Q9HI67), FTHS_THEVO  (Q97CL3), 
FTSQ_GEODF  (B9M176), FTSQ_GEOSL  (Q748D9), FTSQ_GEOSM  (C6DZL0), 
GGR_META3   (A6UWL1), GGR_METJA   (Q57952), GLGC_MYCSS  (Q1B4S9), 
GLND_RHILV  (Q9RAE4), GSA_THEEB   (Q8DLK8), GUAAA_METAC (Q8THC7), 
GUAAA_METMA (Q8PXF0), GUAA_CLOPE  (Q8XI46), HIS7_WOLSU  (Q7M7V2), 
ISPT_WOLSU  (Q7M7V7), KPRH_STRCO  (Q9EWS0), KPRS_RHOBA  (Q7UPM4), 
LEXA_STAA1  (A7X1Z4), LEXA_STAA3  (Q2FH94), LEXA_STAA8  (Q2FYU1), 
LEXA_STAAB  (Q2YXS8), LEXA_STAAC  (Q9L4P1), LEXA_STAAE  (A6QGP1), 
LEXA_STAAM  (P65819), LEXA_STAAN  (P65820), LEXA_STAAR  (Q6GH67), 
LEXA_STAAS  (Q6G9L9), LEXA_STAAW  (Q93SM0), LEXA_STAEQ  (Q5HPK2), 
LEXA_STAHJ  (Q4L648), LEXA_STAS1  (Q49XD4), LEXA_THIDA  (Q3SIT9), 
LIN2_CAEEL  (P54936), LIP6_CANAL  (Q9P4E8), LIPA_RUEST  (Q1GGW2), 
MCEA_KLEPN  (Q9Z4N4), MCHB_ECOL6  (P62531), MCHB_ECOLX  (P62530), 
MI25_MARPO  (P38477), MIP_CHICK   (P28238), MIS_HUMAN   (P03971), 
MPTA_PYRHO  (O59447), MSHB_CORDI  (Q6NI09), MTNA_AERPE  (Q9YE84), 
MURE_YERPE  (Q8ZIF4), MUSK_CHICK  (Q8AXY6), MUSK_HUMAN  (O15146), 
MUSK_MOUSE  (Q61006), MUSK_RAT    (Q62838), NADD_OCEIH  (Q8EPV1), 
NADE_LEIXX  (Q6AER9), NAGB_MYCPU  (Q98QJ9), NANA_HAEIN  (P44539), 
PANB_PYRAB  (Q9V0E1), PANB_PYRFU  (Q8U1R2), PANB_PYRHO  (O58665), 
PANB_THEKO  (Q5JCY6), PDXS_SULTO  (Q971B3), PPC1A_HUMAN (Q5VZY2), 
PPC1A_MOUSE (Q0VBU9), PRMA_BORBR  (Q7WF92), PRMA_BORPA  (Q7W3W2), 
PROB_CARHZ  (Q3AF41), PSAJ_AETCO  (A4QJD5), PSAJ_AETGR  (A4QJL9), 
PSAJ_AGRST  (A1EA28), PSAJ_AMBTC  (Q70XY6), PSAJ_ARAHI  (A4QK38), 
PSAJ_ARATH  (P56769), PSAJ_ATRBE  (Q8S8W3), PSAJ_BARVE  (A4QKC5), 
PSAJ_BUXMI  (A6MM56), PSAJ_CALFG  (Q7YJV6), PSAJ_CAPBU  (A4QKL2), 
PSAJ_CARPA  (B1A955), PSAJ_CERDE  (A8SEC3), PSAJ_CHLSC  (A6MME2), 
PSAJ_CICAR  (B5LMP4), PSAJ_CITSI  (Q09MF8), PSAJ_CRUWA  (A4QKV1), 
PSAJ_CUCSA  (Q2QD69), PSAJ_CYCTA  (A6H5K2), PSAJ_DAUCA  (Q0G9U2), 
PSAJ_DRANE  (A4QL39), PSAJ_DRIGR  (Q06GX7), PSAJ_EUCGG  (Q49KX9), 
PSAJ_GOSBA  (A0ZZ55), PSAJ_GOSHI  (Q2L930), PSAJ_GUIAB  (B2LML3), 
PSAJ_HELAN  (Q1KXT9), PSAJ_HORVU  (A1E9L0), PSAJ_JASNU  (Q06RB2), 
PSAJ_LACSA  (Q332V8), PSAJ_LEPVR  (A4QLC6), PSAJ_LIRTU  (Q0G9J9), 
PSAJ_LOBMA  (A4QLL4), PSAJ_LOLPR  (A8Y9A6), PSAJ_LOTJA  (Q9BBR3), 
PSAJ_MAIZE  (P62596), PSAJ_MANES  (B1NWH0), PSAJ_NANDO  (Q09FU1), 
PSAJ_NASOF  (A4QLV3), PSAJ_NICSY  (Q3C1K9), PSAJ_NICTO  (Q33C12), 
PSAJ_NYMAL  (Q6EW33), PSAJ_OENAR  (B0Z4P6), PSAJ_OENBI  (B0Z4Y0), 
PSAJ_OENEH  (Q9MTK3), PSAJ_OENGL  (B0Z564), PSAJ_OENPA  (B0Z5E8), 
PSAJ_OLIPU  (A4QJV1), PSAJ_ORYNI  (Q6ENF3), PSAJ_ORYSA  (P0C373), 
PSAJ_ORYSI  (P0C374), PSAJ_ORYSJ  (P12192), PSAJ_PANGI  (Q68RY6), 
PSAJ_PEA    (P17229), PSAJ_PELHO  (Q06FK6), PSAJ_PHAVU  (A4GGC6), 
PSAJ_PIPCE  (Q06GP0), PSAJ_PLAOC  (Q09G26), PSAJ_POPAL  (Q14FD7), 
PSAJ_POPTR  (A4GYT1), PSAJ_SACHY  (Q6L381), PSAJ_SACOF  (Q6ENU4), 
PSAJ_SOLBU  (Q2MIG7), PSAJ_SOLLC  (Q2MI80), PSAJ_SOLTU  (Q2VEF8), 
PSAJ_SORBI  (A1E9U4), PSAJ_SOYBN  (Q2PMR4), PSAJ_TOBAC  (P12193), 
PSAJ_VITVI  (Q0ZJ00), PSAJ_WHEAT  (P62595), PURA_MESFL  (Q6F243), 
PYREL_METJA (Q59040), PYRI_ARCFU  (O30129), RBCR_GRATL  (Q6B936), 
REGQ_BP933  (P68922), REGQ_BPH19  (O48429), REGQ_BPVT2  (P68923), 
REQ1_ECOLI  (Q47274), RIMP_ELUMP  (B2KC93), RL11_CHLRE  (P50881), 
RL1_NEOSM   (Q2GD87), RL31_UREPA  (Q9PRE1), RL332_ACHLI (A9NGI6), 
RL332_SORC5 (A9G209), RL33_PSEAE  (Q9HTN9), RL33_PSEME  (P84764), 
RL33_PSEPK  (Q88CA0), RL33_PSESM  (Q88BC7), RM40_SCHPO  (O14178), 
RPOB_CYAME  (Q85FR7), RPOC_BDEBA  (Q6MJ10), RPOC_COXBN  (A9KD37), 
RPOC_COXBR  (A9NAL6), RPOC_COXBU  (Q83ET0), RPOC_HALHL  (A1WVC8), 
RPOC_NITOC  (Q3J8Q8), RPOC_RUTMC  (A1AX74), RPOC_SORC5  (A9GRB4), 
RPOC_TREDE  (Q73JJ8), RPOC_VESOH  (A5CW24), RRAAH_VIBCH (Q9KPK1), 
RRAAH_VIBPA (Q87SD2), RS17L_METAC (Q8TP90), RS17_ARCFU  (O28363), 
RS17_THEKO  (Q5JDH9), RSMG_ALBFT  (Q21QL4), RUBPS_THEKO (Q5JD25), 
SD11_ARATH  (O81833), SNL6_ARATH  (Q9XIK6), SNU71_YEAS7 (A6ZV04), 
SNU71_YEAST (P53207), SPAN2_BP933 (Q9XJJ7), SPEE1_AQUAE (O66473), 
SYC_BARHE   (Q6G5G9), TBA1_ARATH  (P11139), TBA1_HORVU  (Q43473), 
TBA1_ORYSJ  (P28752), TBA2_ELEIN  (O22348), TBA2_NEUCR  (P38669), 
TBA2_SCHPO  (P04689), TBA3_ARATH  (Q56WH1), TBA3_ELEIN  (O22349), 
TBA5_ARATH  (B9DHQ0), TBA5_MAIZE  (Q02245), TBA6_MAIZE  (P33627), 
TBA6_NAEGR  (Q962P8), TBAE_PHYPO  (P11480), TBAN_PHYPO  (P04105), 
TBA_AVESA   (Q38771), TBA_EUGGR   (P33625), TBA_SORMK   (Q92335), 
TNR6A_HUMAN (Q8NDV7), TNR6A_MOUSE (Q3UHK8), TR3N_HUMAN  (Q6F5E7), 
TRMY_METAC  (Q8TQU1), TRMY_METMA  (Q8PU23), TSAE_STRCO  (O86788), 
UBP3_SCHPO  (O94269), UPPP_METKA  (Q8TW25), WDR59_SCHPO (O13686), 
XPT_GEOTN   (A4IN63), XPT_LACPL   (Q88XQ4), Y030_ARCFU  (O30205), 
Y095_AGRT5  (Q8UJ43), Y107_METJA  (Q57571), Y1133_METJA (Q58533), 
Y1137_METJA (Q58537), Y115_OSHVF  (Q6R7B1), Y1253_ARCFU (O29015), 
Y1369_METJA (Q58764), Y1711_STAES (Q8CRN2), Y1800_STRPN (Q97P44), 
Y2161_ARCFU (O28121), Y231_RHIME  (Q92SX1), Y231_SULNB  (A6Q6T2), 
Y364_AQUAE  (O66689), Y3924_STRCO (Q53866), Y620_METKA  (Q8TXP1), 
Y6489_STRCO (Q9ZBI5), Y666_HAEIN  (P44034), Y787_METJA  (Q58197), 
Y790_CLOPS  (Q0SUU2), Y803_CLOP1  (Q0TSY6), Y806_CLOPE  (Q8XM84), 
Y883_MYCTO  (P9WKQ6), Y883_MYCTU  (P9WKQ7), Y907_MYCBO  (P64740), 
YUZO_BACSU  (O32302)
» More

PDB
[Detailed view]
16 PDB

1FFX; 1IA0; 1TUB; 3J1T; 3J1U; 4FFB; 4I4T; 4I55; 4IHJ; 4IIJ; 4O2A; 4O2B; 4O4H; 4O4I; 4O4J; 4O4L
» More

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View entry in raw text format (no links)
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