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| Entry: PS00228 |
| General information about the entry | |
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| Entry name | TUBULIN_B_AUTOREG |
| Accession number | PS00228 |
| Entry type | PATTERN |
| Date | APR-1990 (CREATED); MAY-1991 (DATA UPDATE); MAR-2013 (INFO UPDATE). |
| PROSITE Documentation | PDOC00200 |
| Name and characterization of the entry | |
| Description | Tubulin-beta mRNA autoregulation signal. |
| Pattern | <M-R-[DE]-[IL]. |
| Numerical results | |
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| Comments | |
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| Cross-references | |
| UniProtKB/Swiss-Prot | True positive hits:CWP23_ARATH (P80844), TBA_ENCCU (Q8SRI6), TBB1_ANEPH (P33630), TBB1_ARATH (P12411), TBB1_BRUPA (P18241), TBB1_CAEBR (Q17299), TBB1_CAEEL (P12456), TBB1_CHICK (P09203), TBB1_COLGL (P32928), TBB1_COLGR (P22013), TBB1_CYAPA (Q9ZSW1), TBB1_DROME (Q24560), TBB1_ECHMU (Q9NFZ7), TBB1_ELEIN (Q9ZPP0), TBB1_EMENI (P10653), TBB1_GADMO (Q9YHC3), TBB1_GEOCN (P32924), TBB1_GLOMM (Q27U48), TBB1_HOMAM (Q25009), TBB1_HUMAN (Q9H4B7), TBB1_HYPRU (P31864), TBB1_HYPVI (Q875L3), TBB1_LUPAL (P37392), TBB1_MAIZE (P18025), TBB1_MANSE (O17449), TBB1_MOUSE (A2AQ07), TBB1_NOTCO (P36221), TBB1_ORYSJ (Q43594), TBB1_PARTE (P33188), TBB1_PHYPO (P07436), TBB1_SOLTU (P46263), TBB1_SOYBN (P12459), TBB1_SUIBO (Q6EVK8), TBB1_VOLCA (P11482), TBB1_WHEAT (Q9ZRB2), TBB2A_HUMAN (Q13885), TBB2A_MACFA (Q4R5B3), TBB2A_MOUSE (Q7TMM9), TBB2A_RAT (P85108), TBB2B_BOVIN (Q6B856), TBB2B_HUMAN (Q9BVA1), TBB2B_MOUSE (Q9CWF2), TBB2B_RAT (Q3KRE8), TBB2_ARATH (Q56YW9), TBB2_CAEEL (P52275), TBB2_CHICK (P32882), TBB2_COLGL (P40904), TBB2_COLGR (P22014), TBB2_DAUCA (Q39697), TBB2_DROER (P83130), TBB2_DROHY (P61858), TBB2_DROME (P61857), TBB2_ECHMU (Q9NFZ6), TBB2_ELEIN (Q9ZPN9), TBB2_EMENI (P10874), TBB2_ERYPI (P40905), TBB2_GEOCN (P32925), TBB2_HOMAM (Q94571), TBB2_HYPRU (P31863), TBB2_HYPVI (Q875L2), TBB2_LUPAL (Q40106), TBB2_MAIZE (P18026), TBB2_ORYSJ (Q8H7U1), TBB2_PHYPO (P12458), TBB2_SOLTU (P46264), TBB2_WHEAT (Q9ZRB1), TBB2_XENLA (P13602), TBB3_ARATH (Q9ASR0), TBB3_BOVIN (Q2T9S0), TBB3_CHICK (P09206), TBB3_DROME (P08841), TBB3_ECHMU (Q9NFZ5), TBB3_ELEIN (Q9ZPN8), TBB3_GOSHI (Q6VAF8), TBB3_HUMAN (Q13509), TBB3_MACFA (Q60HC2), TBB3_MAIZE (Q43695), TBB3_MOUSE (Q9ERD7), TBB3_OOMCK (P50261), TBB3_ORYSJ (Q40665), TBB3_RAT (Q4QRB4), TBB3_SOYBN (P28551), TBB3_WHEAT (Q9ZRB0), TBB4A_BOVIN (Q3ZBU7), TBB4A_HUMAN (P04350), TBB4A_MACFA (Q4R4X8), TBB4A_MOUSE (Q9D6F9), TBB4B_BOVIN (Q3MHM5), TBB4B_HUMAN (P68371), TBB4B_MESAU (P86221), TBB4B_MOUSE (P68372), TBB4B_RAT (Q6P9T8), TBB4_ARATH (P24636), TBB4_CAEEL (P41937), TBB4_CHICK (P09652), TBB4_ELEIN (Q9ZPN7), TBB4_MAIZE (Q41782), TBB4_OOMCK (P50262), TBB4_ORYSJ (P45960), TBB4_WHEAT (Q9ZRA9), TBB4_XENLA (P30883), TBB5_ARATH (P29513), TBB5_BOVIN (Q2KJD0), TBB5_CHICK (P09653), TBB5_CRIGR (P69893), TBB5_ECTVR (P30156), TBB5_GOSHI (Q6VAF7), TBB5_HUMAN (P07437), TBB5_MACMU (P69895), TBB5_MAIZE (Q43697), TBB5_MOUSE (P99024), TBB5_ORYSJ (P46265), TBB5_PANTR (Q7JJU6), TBB5_PIG (Q767L7), TBB5_PONAB (Q5R943), TBB5_RAT (P69897), TBB5_WHEAT (Q9ZRA8), TBB5_XENLA (Q91575), TBB5_XENTR (Q6GLE7), TBB6_ARATH (P29514), TBB6_BOVIN (Q2HJ81), TBB6_CHICK (P09207), TBB6_ECTVR (P30157), TBB6_GOSHI (Q6VAF6), TBB6_HUMAN (Q9BUF5), TBB6_MAIZE (Q41783), TBB6_MOUSE (Q922F4), TBB6_ORYSJ (Q76FS3), TBB7_ARATH (P29515), TBB7_CHICK (P09244), TBB7_GOSHI (Q6VAF5), TBB7_MAIZE (Q41784), TBB7_ORYSJ (P37832), TBB8L_HUMAN (A6NNZ2), TBB8_ARATH (P29516), TBB8_HUMAN (Q3ZCM7), TBB8_MAIZE (Q41785), TBB8_ORYSJ (Q76FS2), TBB8_PANTR (Q8WP14), TBB8_PAPHA (Q8WP13), TBB9_ARATH (P29517), TBB9_GOSHI (Q6VAF4), TBBN_GUITH (Q9SEV2), TBBP_DROME (Q9VRX3), TBB_ACHKL (P20802), TBB_ACRCH (P41741), TBB_AJECA (P41742), TBB_ASPFL (P22012), TBB_ASPFU (Q4WA70), TBB_ASPOR (Q2U2U3), TBB_ASPPA (Q00264), TBB_BABBO (Q04709), TBB_BOMMO (P41385), TBB_BOTFU (P53373), TBB_CANAX (P10875), TBB_CERBT (Q3KVN1), TBB_CHLIN (O04386), TBB_CHLRE (P04690), TBB_CICAR (Q39445), TBB_COCHE (Q4R9N3), TBB_COPC7 (P79008), TBB_DICDI (P32256), TBB_EIMTE (Q27380), TBB_ENCCU (Q8SS99), TBB_ENCHE (Q24829), TBB_ENCIN (Q9GSR5), TBB_ENTDO (P35394), TBB_EPITY (P17938), TBB_ERYGR (P16040), TBB_EUGGR (P12457), TBB_EUPCR (P20365), TBB_EUPFO (Q9N2N6), TBB_EUPOC (Q08115), TBB_GIAIN (P05304), TBB_GIBFU (P53374), TBB_GIBZE (Q4HZS8), TBB_HORVU (P93176), TBB_LEIME (P21148), TBB_MELLI (Q9HFQ3), TBB_METAN (Q52NY7), TBB_MYCGR (Q6QDC9), TBB_MYCPJ (O42786), TBB_NAEGR (P34108), TBB_NEOCO (P33127), TBB_NEUCR (P05220), TBB_ONCGI (P41387), TBB_PARLI (P11833), TBB_PENDI (P53375), TBB_PESMI (Q9UV72), TBB_PHANO (P41799), TBB_PHYCI (O59837), TBB_PIG (P02554), TBB_PLAF7 (Q7KQL5), TBB_PLAFA (P14140), TBB_PLAFK (P14643), TBB_PLESA (Q92268), TBB_PNECA (P24637), TBB_POLAG (P22852), TBB_PORPU (P50259), TBB_PORYE (Q84TG9), TBB_PSEAM (Q91240), TBB_RHYSE (P53376), TBB_SCHCO (P30668), TBB_SCHPO (P05219), TBB_STYLE (P11857), TBB_TETPY (P10876), TBB_TETTH (P41352), TBB_THAWE (Q9LKI8), TBB_TOXGO (P10878), TBB_TRIRU (Q5UBX3), TBB_TRITR (O44388), TBB_TRYBR (P04107), TBB_TRYCR (P08562), TBB_UNCNE (Q86ZP5), TBB_UROFA (Q96TU8), TBB_USTMA (Q4P235), TBB_USTVI (Q8WZE0), TBB_VENIN (P41388), TBB_YEAST (P02557)False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile): TBB1_PEA (P29500), TBB2_SOYBN (P12460)`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences): TBB1_AVESA (P25862), TBB1_DAUCA (P20364), TBB2_ANEPH (P33631), TBB2_OOMCK (P50260), TBB2_PEA (P29501), TBB3_ANEPH (P33632), TBB3_PEA (P29502), TBB_HALDI (P41386), TBB_LYMST (P18699), TBB_LYTPI (P02556), TBB_STRPU (P18700)Sequences which could potentially belong to the set under consideration: CE058_HUMAN (C9J3I9)False positive hits (sequences which do not belong to the set under consideration): ACA12_ARATH (Q9LY77), ACPH_CLOAB (Q97HJ4), AGOG_PYRFU (Q8U2D5), ALKH_ZYMMO (Q00384), AMSG_ERWAM (Q46628), ARGJ_STAS1 (Q4A0N0), AROB_SULSO (Q980I9), ATGT_NATPD (Q3IR98), ATPD_WOLSU (Q7MA21), BCSE_ECOLI (P37657), BIOB_METM6 (A9AA75), BIOF_THISH (B8GTH6), BPTA_BORBN (E4QH55), CAS2_THET8 (Q53VV6), COBP_PSEAE (Q9I466), CRCB2_RHOPB (Q214E7), CRCB_METMP (P61395), CRTY_ESCVU (Q01331), CSPLR_ORYSI (B8AC36), CSPLR_ORYSJ (Q5N794), CYNT_PSEAE (Q9I262), DHYS_PYRAE (Q8ZT09), DML1_ASHGO (Q756C7), DML1_COCIM (Q1E2I3), DML1_GIBZE (Q4IBL8), DML1_KLULA (Q6CU61), DML1_PHANO (Q0V254), DML1_YARLI (Q6C6D9), DTXR_CORJK (Q4JV96), ECFT_THEOJ (D9RZP4), ELYS_HUMAN (Q8WYP5), FAC15_MYCBO (Q7TYX8), FAC15_MYCTU (O53521), FB101_ARATH (Q9ZQM4), FENR_SALAI (A8M2W8), FOLD_ANAMM (Q5PBL6), FTHS_THEAC (Q9HI67), FTHS_THEVO (Q97CL3), FTSQ_GEOSF (B9M176), FTSQ_GEOSL (Q748D9), FTSQ_GEOSM (C6DZL0), GGR_META3 (A6UWL1), GGR_METJA (Q57952), GLGC_MYCSS (Q1B4S9), GLND_RHILV (Q9RAE4), GSA_THEEB (Q8DLK8), GUAAA_METAC (Q8THC7), GUAAA_METMA (Q8PXF0), GUAA_CLOPE (Q8XI46), HIS7_WOLSU (Q7M7V2), ISPT_WOLSU (Q7M7V7), KPRH_STRCO (Q9EWS0), KPRS_RHOBA (Q7UPM4), LEXA_STAA1 (A7X1Z4), LEXA_STAA3 (Q2FH94), LEXA_STAA8 (Q2FYU1), LEXA_STAAB (Q2YXS8), LEXA_STAAC (Q9L4P1), LEXA_STAAE (A6QGP1), LEXA_STAAM (P65819), LEXA_STAAN (P65820), LEXA_STAAR (Q6GH67), LEXA_STAAS (Q6G9L9), LEXA_STAAW (Q93SM0), LEXA_STAEQ (Q5HPK2), LEXA_STAHJ (Q4L648), LEXA_STAS1 (Q49XD4), LEXA_THIDA (Q3SIT9), LIN2_CAEEL (P54936), LIP6_CANAL (Q9P4E8), LIPA_RUEST (Q1GGW2), MCEA_KLEPN (Q9Z4N4), MCHB_ECOL6 (P62531), MCHB_ECOLX (P62530), MI25_MARPO (P38477), MIP_CHICK (P28238), MIS_HUMAN (P03971), MPTA_PYRAB (Q9V1S9), MPTA_PYRHO (O59447), MSHB_CORDI (Q6NI09), MTNA_AERPE (Q9YE84), MURE_YERPE (Q8ZIF4), MUSK_CHICK (Q8AXY6), MUSK_HUMAN (O15146), MUSK_MOUSE (Q61006), MUSK_RAT (Q62838), NADD_OCEIH (Q8EPV1), NADE_LEIXX (Q6AER9), NAGB_MYCPU (Q98QJ9), NANA_HAEIN (P44539), PANB_PYRAB (Q9V0E1), PANB_PYRFU (Q8U1R2), PANB_PYRHO (O58665), PANB_PYRKO (Q5JCY6), PDXS_SULTO (Q971B3), PPC1A_HUMAN (Q5VZY2), PPC1A_MOUSE (Q0VBU9), PRMA_BORBR (Q7WF92), PRMA_BORPA (Q7W3W2), PROB_CARHZ (Q3AF41), PSAJ_AETCO (A4QJD5), PSAJ_AETGR (A4QJL9), PSAJ_AGRST (A1EA28), PSAJ_AMBTC (Q70XY6), PSAJ_ARAHI (A4QK38), PSAJ_ARATH (P56769), PSAJ_ATRBE (Q8S8W3), PSAJ_BARVE (A4QKC5), PSAJ_BUXMI (A6MM56), PSAJ_CALFG (Q7YJV6), PSAJ_CAPBU (A4QKL2), PSAJ_CARPA (B1A955), PSAJ_CERDE (A8SEC3), PSAJ_CHLSC (A6MME2), PSAJ_CICAR (B5LMP4), PSAJ_CITSI (Q09MF8), PSAJ_CRUWA (A4QKV1), PSAJ_CUCSA (Q2QD69), PSAJ_CYCTA (A6H5K2), PSAJ_DAUCA (Q0G9U2), PSAJ_DRANE (A4QL39), PSAJ_DRIGR (Q06GX7), PSAJ_EUCGG (Q49KX9), PSAJ_GOSBA (A0ZZ55), PSAJ_GOSHI (Q2L930), PSAJ_GUIAB (B2LML3), PSAJ_HELAN (Q1KXT9), PSAJ_HORVU (A1E9L0), PSAJ_JASNU (Q06RB2), PSAJ_LACSA (Q332V8), PSAJ_LEPVR (A4QLC6), PSAJ_LIRTU (Q0G9J9), PSAJ_LOBMA (A4QLL4), PSAJ_LOLPR (A8Y9A6), PSAJ_LOTJA (Q9BBR3), PSAJ_MAIZE (P62596), PSAJ_MANES (B1NWH0), PSAJ_NANDO (Q09FU1), PSAJ_NASOF (A4QLV3), PSAJ_NICSY (Q3C1K9), PSAJ_NICTO (Q33C12), PSAJ_NYMAL (Q6EW33), PSAJ_OENAR (B0Z4P6), PSAJ_OENBI (B0Z4Y0), PSAJ_OENEH (Q9MTK3), PSAJ_OENGL (B0Z564), PSAJ_OENPA (B0Z5E8), PSAJ_OLIPU (A4QJV1), PSAJ_ORYNI (Q6ENF3), PSAJ_ORYSA (P0C373), PSAJ_ORYSI (P0C374), PSAJ_ORYSJ (P12192), PSAJ_PANGI (Q68RY6), PSAJ_PEA (P17229), PSAJ_PELHO (Q06FK6), PSAJ_PHAVU (A4GGC6), PSAJ_PIPCE (Q06GP0), PSAJ_PLAOC (Q09G26), PSAJ_POPAL (Q14FD7), PSAJ_POPTR (A4GYT1), PSAJ_SACHY (Q6L381), PSAJ_SACOF (Q6ENU4), PSAJ_SOLBU (Q2MIG7), PSAJ_SOLLC (Q2MI80), PSAJ_SOLTU (Q2VEF8), PSAJ_SORBI (A1E9U4), PSAJ_SOYBN (Q2PMR4), PSAJ_TOBAC (P12193), PSAJ_VITVI (Q0ZJ00), PSAJ_WHEAT (P62595), PURA_MESFL (Q6F243), PYREL_METJA (Q59040), PYRI_ARCFU (O30129), RBCR_GRATL (Q6B936), REGQ_BP933 (P68922), REGQ_BPH19 (O48429), REGQ_BPVT2 (P68923), REQ1_ECOLI (Q47274), RIMP_ELUMP (B2KC93), RL11_CHLRE (P50881), RL11_ENCCU (Q8SSG9), RL1_NEOSM (Q2GD87), RL31_UREPA (Q9PRE1), RL332_ACHLI (A9NGI6), RL332_SORC5 (A9G209), RL33_PSEAE (Q9HTN9), RL33_PSEME (P84764), RL33_PSEPK (Q88CA0), RL33_PSESM (Q88BC7), RM40_SCHPO (O14178), RPOB_CYAME (Q85FR7), RPOC_BDEBA (Q6MJ10), RPOC_COXBN (A9KD37), RPOC_COXBR (A9NAL6), RPOC_COXBU (Q83ET0), RPOC_HALHL (A1WVC8), RPOC_NITOC (Q3J8Q8), RPOC_RUTMC (A1AX74), RPOC_SORC5 (A9GRB4), RPOC_TREDE (Q73JJ8), RPOC_VESOH (A5CW24), RRAAH_VIBCH (Q9KPK1), RRAAH_VIBPA (Q87SD2), RS17L_METAC (Q8TP90), RS17_ARCFU (O28363), RS17_PYRKO (Q5JDH9), RSMG_RHOFD (Q21QL4), RUBPS_PYRKO (Q5JD25), RZ1_BP933 (Q9XJJ7), SD11_ARATH (O81833), SNL6_ARATH (Q9XIK6), SNU71_YEAS7 (A6ZV04), SNU71_YEAST (P53207), SPEE1_AQUAE (O66473), SYC_BARHE (Q6G5G9), TBA1_ARATH (P11139), TBA1_HORVU (Q43473), TBA1_ORYSJ (P28752), TBA2_ELEIN (O22348), TBA2_NEUCR (P38669), TBA2_SCHPO (P04689), TBA3_ARATH (Q56WH1), TBA3_ELEIN (O22349), TBA5_ARATH (B9DHQ0), TBA5_MAIZE (Q02245), TBA6_MAIZE (P33627), TBA6_NAEGR (Q962P8), TBAE_PHYPO (P11480), TBAN_PHYPO (P04105), TBA_AVESA (Q38771), TBA_EUGGR (P33625), TBA_SORMK (Q92335), TNR6A_HUMAN (Q8NDV7), TNR6A_MOUSE (Q3UHK8), TR3N_HUMAN (Q6F5E7), TRMY_METAC (Q8TQU1), TRMY_METMA (Q8PU23), UBP3_SCHPO (O94269), UPPP_METKA (Q8TW25), WDR59_SCHPO (O13686), XPT_GEOTN (A4IN63), XPT_LACPL (Q88XQ4), Y030_ARCFU (O30205), Y095_AGRT5 (Q8UJ43), Y107_METJA (Q57571), Y1133_METJA (Q58533), Y1137_METJA (Q58537), Y115_OSHVF (Q6R7B1), Y1253_ARCFU (O29015), Y1369_METJA (Q58764), Y1711_STAES (Q8CRN2), Y1800_STRPN (Q97P44), Y2161_ARCFU (O28121), Y231_RHIME (Q92SX1), Y231_SULNB (A6Q6T2), Y364_AQUAE (O66689), Y3924_STRCO (Q53866), Y4747_STRCO (O86788), Y620_METKA (Q8TXP1), Y6489_STRCO (Q9ZBI5), Y666_HAEIN (P44034), Y787_METJA (Q58197), Y790_CLOPS (Q0SUU2), Y803_CLOP1 (Q0TSY6), Y806_CLOPE (Q8XM84), Y883_MYCTU (P64739), Y907_MYCBO (P64740), YUZO_BACSU (O32302)Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits: [Clustal format, color, condensed view]
[Clustal format, color]
[Clustal format, plain text]
[Fasta format]
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| PDB [Detailed view] |
1FFX; 1IA0; 1LX0; 1TUB; 3J1T; 3J1U; 4FFB; 4I4T; 4I55; 4IHJ; 4IIJ; |
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View entry in raw text format (no links)
Direct ScanProsite submission
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