Entry: PS00233

General information about the entry
Entry name CHIT_BIND_RR_1
Accession number PS00233
Entry type PATTERN
Date APR-1990 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00206
Name and characterization of the entry
DescriptionChitin-binding type R&R domain signature.
Pattern G-x(7)-[DEN]-G-x(6)-[FY]-x-A-[DNG]-x(2,3)-G-[FY]-x-[APV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 71 hits in 71 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 70 hits in 70 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 9
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 3
  • Precision (true hits / (true hits + false positives)): 98.59 %
  • Recall (true hits / (true hits + false negatives)): 88.61 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CU01_ANOGA  (Q17015), CU02_HOMAM  (P81386), CU02_LONON  (P85196), 
CU03_HOMAM  (P81387), CU03_LONON  (P85197), CU04_HOMAM  (P81388), 
CU05_HOMAM  (P81389), CU07_LOCMI  (P11733), CU08_LOCMI  (P11734), 
CU109_IXORI (P84251), CU12_HYACE  (P45589), CU14A_LIMPO (P83354), 
CU14B_LIMPO (P83355), CU14_MANSE  (P13229), CU15_MANSE  (Q94984), 
CU168_IXORI (P84252), CU16_MANSE  (Q25504), CU17_BOMMO  (O02387), 
CU18A_LOCMI (P83994), CU18B_LOCMI (P83995), CU198_LOCMI (P82166), 
CU19_ARADI  (P80515), CU19_LOCMI  (P45583), CU1A_HOMAM  (P81384), 
CU1B_HOMAM  (P81385), CU20_MANSE  (Q8T635), CU20_TENMO  (P26967), 
CU21_LOCMI  (P81225), CU22_BOMMO  (O02388), CU24_ARADI  (P80516), 
CU26_ARADI  (P80517), CU30_BOMMO  (Q08738), CU36_MANSE  (Q8MUC5), 
CU55_ARADI  (P80518), CU57_ARADI  (P80519), CU66_HYACE  (P45590), 
CUA1A_TENMO (P80681), CUA2B_TENMO (P80682), CUA3A_TENMO (P80683), 
CUD1_SCHGR  (Q7M4F4), CUD2_SCHGR  (Q7M4F3), CUD4_LOCMI  (P21799), 
CUD4_SCHGR  (Q7M4F1), CUD5_LOCMI  (P56561), CUD5_SCHGR  (P56562), 
CUD6_SCHGR  (Q7M4E8), CUD8_SCHGR  (Q7M4F2), CUD9_SCHGR  (Q7M4F0), 
CULP1_HELAM (O02443), CUO7_BLACR  (P82120), CUO8_BLACR  (P82121), 
CUP7_DROME  (P27779), CUP8_DROME  (P27780), CUPA1_CANPG (P81575), 
CUPA2_CANPG (P81576), CUPA3_CANPG (P81577), CUPA4_CANPG (P81578), 
CUPA5_CANPG (P81579), CUPP_DROME  (P14484), CUPP_DROPS  (P16369), 
LCP1_DROME  (P02839), LCP1_DROMI  (P91627), LCP2_DROME  (P07187), 
LCP2_DROMI  (P91629), LCP34_DROMI (Q01774), LCP3_DROME  (P07188), 
LCP4_DROME  (P07189), LCP8_DROME  (P92201), LCP9_DROME  (P82384), 
RESIL_DROME (Q9V7U0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CU22_TENMO  (P26968), CU27_MANSE  (Q8T4J9), CU36A_MANSE (Q8T634), 
CUC11_CANPG (P81589), CUD3_SCHGR  (Q7M4E9), CUO6_BLACR  (P82119), 
LCP2A_DROME (Q7JZV0), LCP5_DROME  (P92192), MBN_DROME   (P52302)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
CUP1_SARBU  (P14485), CUP4_SARBU  (P14486), CUP6_SARBU  (P14487)
False positive hits (sequences which do not belong to the set under consideration):
OXDD_BACSU  (O34767)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

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