Entry: PS00243

General information about the entry
Entry name INTEGRIN_BETA
Accession number PS00243
Entry type PATTERN
Date APR-1990 (CREATED); APR-1990 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00216
Name and characterization of the entry
DescriptionIntegrins beta chain cysteine-rich domain signature.
Pattern C-x-[GNQ]-x(1,3)-G-x-C-x-C-x(2)-C-x-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 149 hits in 48 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 149 hits in 48 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 10
  • `Interesting' site in the pattern: 1,disulfide(?)
  • `Interesting' site in the pattern: 7,disulfide(?)
  • `Interesting' site in the pattern: 9,disulfide(?)
  • `Interesting' site in the pattern: 11,disulfide(?)
  • `Interesting' site in the pattern: 13,disulfide(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ITB1A_XENLA (P12606), ITB1B_XENLA (P12607), ITB1_BOVIN  (P53712), 
ITB1_CAMBA  (A5Z1X6), ITB1_CHICK  (P07228), ITB1_FELCA  (P53713), 
ITB1_HUMAN  (P05556), ITB1_MOUSE  (P09055), ITB1_PIG    (Q9GLP0), 
ITB1_PONAB  (Q5RCA9), ITB1_RAT    (P49134), ITB1_SHEEP  (B0FYY4), 
ITB2L_MOUSE (Q3UV74), ITB2_BOVIN  (P32592), ITB2_CAPHI  (Q5VI41), 
ITB2_HUMAN  (P05107), ITB2_MOUSE  (P11835), ITB2_OVICA  (Q2VJ42), 
ITB2_PIG    (P53714), ITB2_SHEEP  (Q6ECI6), ITB3_HUMAN  (P05106), 
ITB3_MOUSE  (O54890), ITB4_HUMAN  (P16144), ITB4_MOUSE  (A2A863), 
ITB4_RAT    (Q64632), ITB5_BOVIN  (P80747), ITB5_HUMAN  (P18084), 
ITB5_MOUSE  (O70309), ITB5_PAPCY  (Q07441), ITB6_BOVIN  (Q8SQB8), 
ITB6_CAVPO  (P18563), ITB6_HUMAN  (P18564), ITB6_MOUSE  (Q9Z0T9), 
ITB6_PIG    (Q1RPR6), ITB6_RAT    (Q6AYF4), ITB6_SHEEP  (Q863C4), 
ITB7_HUMAN  (P26010), ITB7_MOUSE  (P26011), ITB8_HUMAN  (P26012), 
ITB8_RABIT  (P26013), ITBL_CAEEL  (Q9GYK2), ITBN_DROME  (Q27591), 
ITBX_DROME  (P11584), ITGBL_HUMAN (O95965), ITGBL_MOUSE (Q8VDV0), 
ITGBL_RAT   (Q5PQQ8), ITGBL_XENLA (Q5M9B3), PAT3_CAEEL  (Q27874)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1JV2; 1L3Y; 1L5G; 1LH9; 1LHA; 1M1X; 1U8C; 2INI; 2P26; 2P28; 3FCS; 3IJE; 3K6S; 3K71; 3K72; 4G1E; 4G1M;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or