Entry: PS00245

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General information about the entry

Entry name [info] PHYTOCHROME_1
Accession [info] PS00245
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); NOV-1997 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00218

Name and characterization of the entry

Description [info] Phytochrome chromophore attachment site signature.
Pattern [info]
[RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 38 in 38 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.44 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] chromophore at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

PHY1_CERPU  (P25848), PHY1_PHYPA  (P36505), PHY1_SELMA  (Q01549), 
PHY2_CERPU  (Q39557), PHYA1_MAIZE (P19862), PHYA1_TOBAC (P33530), 
PHYA3_AVESA (P06593), PHYA4_AVESA (P06594), PHYA5_AVESA (P06595), 
PHYA_ARATH  (P14712), PHYA_CUCPE  (P06592), PHYA_LATSA  (P93673), 
PHYA_ORYSI  (A2XLG5), PHYA_ORYSJ  (Q10DU0), PHYA_PEA    (P15001), 
PHYA_PETCR  (P55141), PHYA_POPTM  (O49934), PHYA_SOLTU  (P30733), 
PHYA_SORBI  (P93526), PHYA_SOYBN  (P42500), PHYB1_SOLLC (Q9ZS62), 
PHYB_ARATH  (P14713), PHYB_ORYSI  (A2XFW2), PHYB_ORYSJ  (Q10MG9), 
PHYB_SOLTU  (P34094), PHYB_SORBI  (P93527), PHYB_SOYBN  (P42499), 
PHYB_TOBAC  (P29130), PHYC_ARATH  (P14714), PHYC_ORYSI  (A2XM23), 
PHYC_ORYSJ  (Q10CQ8), PHYD_ARATH  (P42497), PHYE_ARATH  (P42498), 
PHYE_IPONI  (P55004), PHY_ADICA   (P42496), PHY_MOUSC   (P33529), 
PHY_PICAB   (Q40762), PHY_PINSY   (Q41046)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BPHY_DEIRA  (Q9RZA4), BPHY_PSEAE  (Q9HWR3), PHY1_SYNY3  (Q55168), 
PHY2_SYNY3  (Q55434), PHYA_NOSS1  (Q9LCC2), PHYB_NOSS1  (Q9R6X3), 
PHYC_SORBI  (P93528)
» More


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