Entry: PS00245

General information about the entry
Entry name PHYTOCHROME_1
Accession number PS00245
Entry type PATTERN
Date APR-1990 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00218
Name and characterization of the entry
DescriptionPhytochrome chromophore attachment site signature.
Pattern [RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 38 hits in 38 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 38 hits in 38 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 84.44 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 6,chromophore
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
PHY1_CERPU  (P25848), PHY1_PHYPA  (P36505), PHY1_SELMA  (Q01549), 
PHY2_CERPU  (Q39557), PHYA1_MAIZE (P19862), PHYA1_TOBAC (P33530), 
PHYA3_AVESA (P06593), PHYA4_AVESA (P06594), PHYA5_AVESA (P06595), 
PHYA_ARATH  (P14712), PHYA_CUCPE  (P06592), PHYA_LATSA  (P93673), 
PHYA_ORYSI  (A2XLG5), PHYA_ORYSJ  (Q10DU0), PHYA_PEA    (P15001), 
PHYA_PETCR  (P55141), PHYA_POPTM  (O49934), PHYA_SOLTU  (P30733), 
PHYA_SORBI  (P93526), PHYA_SOYBN  (P42500), PHYB1_SOLLC (Q9ZS62), 
PHYB_ARATH  (P14713), PHYB_ORYSI  (A2XFW2), PHYB_ORYSJ  (Q10MG9), 
PHYB_SOLTU  (P34094), PHYB_SORBI  (P93527), PHYB_SOYBN  (P42499), 
PHYB_TOBAC  (P29130), PHYC_ARATH  (P14714), PHYC_ORYSI  (A2XM23), 
PHYC_ORYSJ  (Q10CQ8), PHYD_ARATH  (P42497), PHYE_ARATH  (P42498), 
PHYE_IPONI  (P55004), PHY_ADICA   (P42496), PHY_MOUSC   (P33529), 
PHY_PICAB   (Q40762), PHY_PINSY   (Q41046)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BPHY_DEIRA  (Q9RZA4), BPHY_PSEAE  (Q9HWR3), PHY1_SYNY3  (Q55168), 
PHY2_SYNY3  (Q55434), PHYA_NOSS1  (Q9LCC2), PHYB_NOSS1  (Q9R6X3), 
PHYC_SORBI  (P93528)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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