Entry: PS00245

General information about the entry

Entry name [info] PHYTOCHROME_1
Accession [info] PS00245
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); NOV-1997 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00218

Name and characterization of the entry

Description [info] Phytochrome chromophore attachment site signature.
Pattern [info]
[RGS]-[GSA]-[PV]-H-x-C-H-x(2)-Y.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 38 in 38 different sequences
Number of true positive hits 38 in 38 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.44 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] chromophore at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
38 sequences

PHY1_CERPU  (P25848    ), PHY1_PHYPA  (P36505    ), PHY1_SELMA  (Q01549    ), 
PHY2_CERPU  (Q39557    ), PHYA1_MAIZE (P19862    ), PHYA1_TOBAC (P33530    ), 
PHYA3_AVESA (P06593    ), PHYA4_AVESA (P06594    ), PHYA5_AVESA (P06595    ), 
PHYA_ARATH  (P14712    ), PHYA_CUCPE  (P06592    ), PHYA_LATSA  (P93673    ), 
PHYA_ORYSI  (A2XLG5    ), PHYA_ORYSJ  (Q10DU0    ), PHYA_PEA    (P15001    ), 
PHYA_PETCR  (P55141    ), PHYA_POPTM  (O49934    ), PHYA_SOLTU  (P30733    ), 
PHYA_SORBI  (P93526    ), PHYA_SOYBN  (P42500    ), PHYB1_SOLLC (Q9ZS62    ), 
PHYB_ARATH  (P14713    ), PHYB_ORYSI  (A2XFW2    ), PHYB_ORYSJ  (Q10MG9    ), 
PHYB_SOLTU  (P34094    ), PHYB_SORBI  (P93527    ), PHYB_SOYBN  (P42499    ), 
PHYB_TOBAC  (P29130    ), PHYC_ARATH  (P14714    ), PHYC_ORYSI  (A2XM23    ), 
PHYC_ORYSJ  (Q10CQ8    ), PHYD_ARATH  (P42497    ), PHYE_ARATH  (P42498    ), 
PHYE_IPONI  (P55004    ), PHY_ADICA   (P42496    ), PHY_MOUSC   (P33529    ), 
PHY_PICAB   (Q40762    ), PHY_PINSY   (Q41046    )
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

BPHY_DEIRA  (Q9RZA4    ), BPHY_PSEAE  (Q9HWR3    ), PHY1_SYNY3  (Q55168    ), 
PHY2_SYNY3  (Q55434    ), PHYA_NOSS1  (Q9LCC2    ), PHYB_NOSS1  (Q9R6X3    ), 
PHYC_SORBI  (P93528    )
» more

PDB
[Detailed view]
1 PDB

4OUR

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