Entry: PS00249

General information about the entry

Entry name [info] PDGF_1
Accession [info] PS00249
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00222

Name and characterization of the entry

Description [info] Platelet-derived growth factor (PDGF) family signature.
Pattern [info]
P-[PSR]-C-V-x(3)-R-C-[GSTA]-G-C-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 61 in 61 different sequences
Number of true positive hits 61 in 61 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 10
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.92 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] disulfide at position 3
Site [info] disulfide at position 7
Site [info] disulfide at position 10
Site [info] disulfide at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
61 sequences

PDGFA_BOVIN (Q2KJ15    ), PDGFA_HUMAN (P04085    ), PDGFA_MOUSE (P20033    ), 
PDGFA_RABIT (P34007    ), PDGFA_RAT   (P28576    ), PDGFA_XENLA (P13698    ), 
PDGFB_CANLF (Q6Q7I7    ), PDGFB_FELCA (P12919    ), PDGFB_HUMAN (P01127    ), 
PDGFB_MOUSE (P31240    ), PDGFB_RAT   (Q05028    ), PDGFB_SHEEP (Q95229    ), 
PLGF_BOVIN  (Q9XS47    ), PLGF_HUMAN  (P49763    ), PLGF_MOUSE  (P49764    ), 
PLGF_RAT    (Q63434    ), TSIS_WMSV   (P01128    ), TXVE1_SISCA (B0VXV3    ), 
TXVE2_MACLB (P82475    ), TXVE2_PROMU (Q330K6    ), TXVE_AGKPI  (C0K3N2    ), 
TXVE_BITAR  (C0K3N1    ), TXVE_BOTER  (Q6J936    ), TXVE_BOTIN  (Q90X24    ), 
TXVE_BOTJA  (Q90X23    ), TXVE_CROAT  (C0K3N3    ), TXVE_DABRR  (P67861    ), 
TXVE_DABSI  (P0DL42    ), TXVE_PROFL  (P67862    ), TXVE_SISCA  (B0VXV4    ), 
TXVE_VIPAA  (P67863    ), TXVE_VIPAP  (P83942    ), VEGFA_AGKPI (C0K3N4    ), 
VEGFA_BITGA (P83906    ), VEGFA_BOVIN (P15691    ), VEGFA_CANLF (Q9MYV3    ), 
VEGFA_CAVPO (P26617    ), VEGFA_CHICK (P67964    ), VEGFA_COTJA (P67965    ), 
VEGFA_HORSE (Q9GKR0    ), VEGFA_HUMAN (P15692    ), VEGFA_MESAU (Q99PS1    ), 
VEGFA_MOUSE (Q00731    ), VEGFA_PIG   (P49151    ), VEGFA_PROFL (P67860    ), 
VEGFA_RAT   (P16612    ), VEGFA_SHEEP (P50412    ), VEGFA_VIPAA (C0K3N5    ), 
VEGFB_BOVIN (Q9XS49    ), VEGFB_HUMAN (P49765    ), VEGFB_MOUSE (P49766    ), 
VEGFB_RAT   (O35485    ), VEGFC_HUMAN (P49767    ), VEGFC_MOUSE (P97953    ), 
VEGFC_RAT   (O35757    ), VEGFD_HUMAN (O43915    ), VEGFD_MOUSE (P97946    ), 
VEGFD_RAT   (O35251    ), VEGFH_ORFN2 (P52584    ), VEGFH_ORFN7 (P52585    ), 
VGFAA_DANRE (O73682    )
» more

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

PDGFC_CHICK (Q9I946    ), PDGFC_GEKJA (A8WCC4    ), PDGFC_HUMAN (Q9NRA1    ), 
PDGFC_MOUSE (Q8CI19    ), PDGFC_RAT   (Q9EQX6    ), PDGFD_HUMAN (Q9GZP0    ), 
PDGFD_MOUSE (Q925I7    ), PDGFD_PONAB (Q5RA73    ), PDGFD_RABIT (Q6V9H4    ), 
PDGFD_RAT   (Q9EQT1    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PDGFB_PIG   (P20034    )

		
PDB
[Detailed view]
48 PDB

1BJ1; 1CZ8; 1FLT; 1FZV; 1KAT; 1PDG; 1QTY; 1RV6; 1TZH; 1TZI; 1VPF; 1VPP; 1WQ8; 1WQ9; 2C7W; 2FJG; 2FJH; 2GNN; 2QR0; 2VPF; 2VWE; 2X1W; 2X1X; 2XAC; 2XV7; 3BDY; 3MJG; 3MJK; 3P9W; 3QTK; 3S1B; 3S1K; 3V2A; 3V6B; 4BSK; 4GLN; 4GLS; 4HQU; 4HQX; 4KZN; 4QAF; 4QCI; 4WPB; 4ZFF; 5FV1; 5FV2; 5HHC; 5HHD
» more

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