Entry: PS00249

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General information about the entry

Entry name [info] PDGF_1
Accession [info] PS00249
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00222

Name and characterization of the entry

Description [info] Platelet-derived growth factor (PDGF) family signature.
Pattern [info]
P-[PSR]-C-V-x(3)-R-C-[GSTA]-G-C-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 60 in 60 different sequences
Number of true positive hits 60 in 60 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 10
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.71 %

Comments [info]

Taxonomic range [info] Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] disulfide at position 3
Site [info] disulfide at position 7
Site [info] disulfide at position 10
Site [info] disulfide at position 11
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
60 sequences

PDGFA_BOVIN (Q2KJ15), PDGFA_HUMAN (P04085), PDGFA_MOUSE (P20033), 
PDGFA_RABIT (P34007), PDGFA_RAT   (P28576), PDGFA_XENLA (P13698), 
PDGFB_CANFA (Q6Q7I7), PDGFB_FELCA (P12919), PDGFB_HUMAN (P01127), 
PDGFB_MOUSE (P31240), PDGFB_RAT   (Q05028), PDGFB_SHEEP (Q95229), 
PLGF_BOVIN  (Q9XS47), PLGF_HUMAN  (P49763), PLGF_MOUSE  (P49764), 
PLGF_RAT    (Q63434), TSIS_WMSV   (P01128), TXVE1_SISCA (B0VXV3), 
TXVE2_MACLB (P82475), TXVE2_PROMU (Q330K6), TXVE_AGKPI  (C0K3N2), 
TXVE_BITAR  (C0K3N1), TXVE_BOTER  (Q6J936), TXVE_BOTIN  (Q90X24), 
TXVE_BOTJA  (Q90X23), TXVE_CROAT  (C0K3N3), TXVE_DABRR  (P67861), 
TXVE_PROFL  (P67862), TXVE_SISCA  (B0VXV4), TXVE_VIPAA  (P67863), 
TXVE_VIPAP  (P83942), VEGFA_AGKPI (C0K3N4), VEGFA_BITGA (P83906), 
VEGFA_BOVIN (P15691), VEGFA_CANFA (Q9MYV3), VEGFA_CAVPO (P26617), 
VEGFA_CHICK (P67964), VEGFA_COTJA (P67965), VEGFA_HORSE (Q9GKR0), 
VEGFA_HUMAN (P15692), VEGFA_MESAU (Q99PS1), VEGFA_MOUSE (Q00731), 
VEGFA_PIG   (P49151), VEGFA_PROFL (P67860), VEGFA_RAT   (P16612), 
VEGFA_SHEEP (P50412), VEGFA_VIPAA (C0K3N5), VEGFB_BOVIN (Q9XS49), 
VEGFB_HUMAN (P49765), VEGFB_MOUSE (P49766), VEGFB_RAT   (O35485), 
VEGFC_HUMAN (P49767), VEGFC_MOUSE (P97953), VEGFC_RAT   (O35757), 
VEGFD_HUMAN (O43915), VEGFD_MOUSE (P97946), VEGFD_RAT   (O35251), 
VEGFH_ORFN2 (P52584), VEGFH_ORFN7 (P52585), VGFAA_DANRE (O73682)
» More

UniProtKB/Swiss-Prot
False negative sequences
10 sequences

PDGFC_CHICK (Q9I946), PDGFC_GECJA (A8WCC4), PDGFC_HUMAN (Q9NRA1), 
PDGFC_MOUSE (Q8CI19), PDGFC_RAT   (Q9EQX6), PDGFD_HUMAN (Q9GZP0), 
PDGFD_MOUSE (Q925I7), PDGFD_PONAB (Q5RA73), PDGFD_RABIT (Q6V9H4), 
PDGFD_RAT   (Q9EQT1)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PDGFB_PIG   (P20034)

		
PDB
[Detailed view]
39 PDB

1BJ1; 1CZ8; 1FLT; 1FZV; 1KAT; 1PDG; 1QTY; 1RV6; 1TZH; 1TZI; 1VPF; 1VPP; 1WQ8; 1WQ9; 2C7W; 2FJG; 2FJH; 2GNN; 2QR0; 2VPF; 2VWE; 2X1W; 2X1X; 2XAC; 2XV7; 3BDY; 3MJG; 3MJK; 3P9W; 3QTK; 3S1B; 3S1K; 3V2A; 3V6B; 4BSK; 4GLN; 4GLS; 4HQU; 4HQX
» More

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