Entry: PS00257

General information about the entry
Entry name BOMBESIN
Accession number PS00257
Entry type PATTERN
Date APR-1990 (CREATED); APR-1990 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00230
Name and characterization of the entry
DescriptionBombesin-like peptides family signature.
Pattern W-A-x-G-[SH]-[LF]-M.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 38 hits in 38 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 36 hits in 36 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 2 hits in 2 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 94.74 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ALYT_ALYOB  (P08944), BOMB_BOMBO  (P84214), BOMB_BOMOR  (P21591), 
BOMB_BOMVA  (P84213), BOMB_PELRI  (P86026), BOMB_RANSH  (P86994), 
BOMB_SANVA  (P86483), BOML1_BOMVA (P84212), BOML2_BOMVA (P84211), 
BOML_PSEGU  (P42991), GRP_ALLMI   (P31886), GRP_BOMOR   (P29007), 
GRP_BOVIN   (Q863C3), GRP_CANFA   (P08989), GRP_CAVPO   (P63152), 
GRP_CHICK   (P01295), GRP_HUMAN   (P07492), GRP_MOUSE   (Q8R1I2), 
GRP_ONCMY   (Q9PS30), GRP_PELRI   (P23260), GRP_PIG     (P63153), 
GRP_RAT     (P24393), GRP_SCYCA   (P09472), GRP_SHEEP   (P47851), 
LITL_PHYSA  (P08948), LITO_LITAU  (P08945), LITP_PHYSA  (P08947), 
LITR_PHYRO  (P08946), NMB_BOVIN   (Q2T9U8), NMB_HUMAN   (P08949), 
NMB_MOUSE   (Q9CR53), NMB_PIG     (P01297), NMB_XENLA   (P43443), 
RANA_RANPI  (P08950), RANC_RANPI  (P08951), RANR_GLARU  (P08952)
False positive hits (sequences which do not belong to the set under consideration):
PLB1_CRYNB  (P0CP75), PLB1_CRYNJ  (P0CP74)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1C98; 1C9A;

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