Entry: PS00307

General information about the entry

Entry name [info] LECTIN_LEGUME_BETA
Accession [info] PS00307
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); JUL-1998 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins beta-chain signature.
Pattern [info]
[LIV]-[STAG]-V-[DEQV]-[FLI]-D-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 261 in 261 different sequences
Number of true positive hits 93 in 93 different sequences
Number of 'unknown' hits 1
Number of false positive hits 167 in 167 different sequences
Number of false negative sequences 33
Number of 'partial' sequences 9
Precision (true positives / (true positives + false positives)) 35.77 %
Recall (true positives / (true positives + false negatives)) 73.81 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] manganese at position 4
Site [info] manganese_calcium at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
93 sequences

ARC1_PHAVU  (P19329    ), ARC2_PHAVU  (P19330    ), ARC4_PHAVU  (Q43629    ), 
BGA16_ARATH (Q8GX69    ), CONA_CANBR  (P55915    ), CONA_CANCT  (P81461    ), 
CONA_CANEN  (P02866    ), CONA_CANGL  (P14894    ), CONA_CANLI  (P81460    ), 
CONA_CANRO  (P81364    ), FRIL_LABPU  (Q9ZTA9    ), LCB1_ROBPS  (Q41159    ), 
LCB2_ROBPS  (Q42372    ), LCB3_ROBPS  (Q41160    ), LCS1_ROBPS  (Q41162    ), 
LCS2_ROBPS  (Q41161    ), LEA1_PHAVU  (P02873    ), LEA2_PHAVU  (Q41114    ), 
LEC1_CLAKE  (Q39528    ), LEC1_CRAMO  (P83721    ), LEC1_CYTSE  (P22970    ), 
LEC1_LABAL  (P23558    ), LEC1_MEDTR  (Q01806    ), LEC1_PSOTE  (O24313    ), 
LEC1_ULEEU  (P22972    ), LEC1_VIGUC  (P05045    ), LEC2_CLAKE  (Q39529    ), 
LEC2_CYTSC  (P29257    ), LEC2_CYTSE  (P22971    ), LEC2_MEDTR  (Q01807    ), 
LEC2_ULEEU  (P22973    ), LEC4_GRISI  (P24146    ), LEC5_VIGUC  (P19588    ), 
LECA2_LABPU (B3EWQ9    ), LECA_CANBL  (A0A023GPI8), LECA_CANBN  (P58906    ), 
LECA_CRAAG  (P81517    ), LECA_CYMRO  (P86184    ), LECA_DIOGR  (P08902    ), 
LECA_DIOGU  (P81637    ), LECA_DIORO  (P58908    ), LECA_DIOSC  (B3EWJ2    ), 
LECA_DIOVI  (P58907    ), LECA_DIOVO  (P58909    ), LECA_DIOWI  (P86624    ), 
LECA_LABPU  (P38662    ), LECA_SPAPA  (P86352    ), LECB_LATOC  (P04122    ), 
LECB_SPAPA  (P86353    ), LECB_STYJP  (P93538    ), LECC1_ARAHY (Q70DJ5    ), 
LECC1_CENTO (C0HJX1    ), LECG_ARAHY  (P02872    ), LECR_CLAKE  (Q39527    ), 
LECS_STYJP  (P93535    ), LECS_VATGU  (P86893    ), LECS_VATMA  (P81371    ), 
LEC_BAUPU   (P16030    ), LEC_ERYCG   (P83410    ), LEC_ERYCO   (P16404    ), 
LEC_LATSP   (P16349    ), LEC_LENCC   (Q93WH6    ), LEC_LENCO   (Q93X49    ), 
LEC_LENCT   (Q8VXF2    ), LEC_LENCU   (P02870    ), LEC_LEUMI   (P42088    ), 
LEC_LOTTE   (P19664    ), LEC_ONOVI   (P02874    ), LEC_PEA     (P02867    ), 
LEC_PHALU   (P16300    ), LEC_SOYBN   (P05046    ), LEC_VACFA   (P84849    ), 
LEC_VICFA   (P02871    ), LEC_VICVI   (P56625    ), LK110_ARATH (Q3E884    ), 
LRK12_ARATH (Q7FK82    ), LRK16_ARATH (Q9M1G3    ), LRK17_ARATH (Q9LSS0    ), 
LRK19_ARATH (Q9LSR8    ), LRK22_ARATH (Q9FIF0    ), LRK32_ARATH (Q9ZW11    ), 
LRK43_ARATH (O81292    ), LRK51_ARATH (O04534    ), LRK59_ARATH (Q9SZD5    ), 
LRK81_ARATH (Q9LFH9    ), LRK82_ARATH (Q9LYX1    ), LRKS1_ARATH (Q9M9E0    ), 
LRKS5_ARATH (Q9FG33    ), LRKS6_ARATH (Q9FHX3    ), PHAE_PHAVU  (P05088    ), 
PHAL_PHAVU  (P05087    ), PHAM_PHAVU  (P15231    ), YOUB_SCHPO  (O74793    )
» more

UniProtKB/Swiss-Prot
False negative sequences
33 sequences

AR5A_PHAVU  (Q42460    ), AR5B_PHAVU  (Q41116    ), LEC2_CYMRO  (P86795    ), 
LECN_PEA    (P16270    ), LECR_PEA    (Q40987    ), LK111_ARATH (Q9FJI4    ), 
LRK11_ARATH (Q9M3E5    ), LRK13_ARATH (Q9M3D8    ), LRK14_ARATH (Q9M3D7    ), 
LRK15_ARATH (Q9M1G4    ), LRK18_ARATH (Q9LSR9    ), LRK21_ARATH (Q9FIF1    ), 
LRK31_ARATH (Q9ZW09    ), LRK41_ARATH (O80939    ), LRK42_ARATH (Q9M345    ), 
LRK44_ARATH (O81291    ), LRK52_ARATH (O04533    ), LRK53_ARATH (O22834    ), 
LRK54_ARATH (O22833    ), LRK55_ARATH (Q96285    ), LRK56_ARATH (Q9LEA3    ), 
LRK57_ARATH (Q9ZR79    ), LRK58_ARATH (Q9M1Z9    ), LRK61_ARATH (Q9SR87    ), 
LRK62_ARATH (Q9M021    ), LRK63_ARATH (Q9M020    ), LRK64_ARATH (Q66GN2    ), 
LRK71_ARATH (Q9S9U1    ), LRK72_ARATH (O49445    ), LRK91_ARATH (Q9LXA5    ), 
LRK92_ARATH (Q9LSL5    ), LRKS4_ARATH (Q9M2S4    ), LRKS7_ARATH (Q9FHG4    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
9 sequences

LEAH_PHAVU  (P81870    ), LEC3_ULEEU  (P23032    ), LEC_CROJU   (P16352    ), 
LEC_CROPI   (P16351    ), LEC_DELRE   (P83511    ), LEC_MACAX   (P02875    ), 
LG29_VIGUS  (P83955    ), LG31_VIGUS  (P83956    ), PVAP_PHAVU  (P84869    )
» more

UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

RNJ_SINM2   (M4MR97    )

		
UniProtKB/Swiss-Prot
False positive sequences
167 sequences

3DHQ_PODAN  (Q86ZM3    ), A92_SSV1    (P0C6K8    ), ACKA_TREDE  (Q73P66    ), 
AMO_ARATH   (Q8H1H9    ), AROB_BORBR  (Q7WR84    ), AROB_BORPA  (Q7W2B6    ), 
AROB_BORPE  (Q7VT93    ), BGALA_NEOFI (A1D1Z9    ), BGL21_ORYSJ (Q60DY1    ), 
BI1_ORYSJ   (Q9MBD8    ), BIN3D_ARATH (Q6NPC9    ), CARP3_CANAL (P0CY29    ), 
CARP3_CANAW (C4YNQ5    ), CARP3_CANAX (P0CY28    ), CDHR1_DANRE (Q6B3P0    ), 
CLPC_CHLMU  (Q9PKA8    ), CLPC_CHLTR  (O84288    ), CNOT1_DANRE (A1A5H6    ), 
CNOT1_HUMAN (A5YKK6    ), CNOT1_MOUSE (Q6ZQ08    ), CNOT1_XENTR (A0JP85    ), 
COAX_DEIRA  (Q9RX54    ), COBG_PSEDE  (P21637    ), COXX_HALS3  (B0R3W4    ), 
COXX_HALSA  (Q9HRJ8    ), DPO1_RICCN  (Q92GB7    ), DPO1_RICFE  (Q9RAA9    ), 
DPO1_RICHE  (Q9RLB6    ), EGLN_MOUSE  (Q63961    ), ENV_FRSFL   (P03394    ), 
EPIP1_EPING (P83340    ), ERA_STRGC   (O24756    ), ERA_STRMU   (P37214    ), 
EXU2_DROPS  (Q24617    ), EXU_DROME   (P28750    ), EXU_DROVI   (Q24747    ), 
FCGRN_MOUSE (Q61559    ), FCGRN_RAT   (P13599    ), FMN2_HUMAN  (Q9NZ56    ), 
GATC_POPTR  (B9INH0    ), GDL13_ARATH (Q38894    ), GEFV_DICDI  (Q55FD8    ), 
HEXB_FELCA  (P49614    ), HIS7_LEGPA  (Q5X5X1    ), HIS7_LEGPH  (Q5ZW89    ), 
HIS7_LEGPL  (Q5WX93    ), I5P2_HUMAN  (P32019    ), IFFO1_HUMAN (Q0D2I5    ), 
IFFO1_MOUSE (Q8BXL9    ), IFFO2_HUMAN (Q5TF58    ), IFFO2_MOUSE (Q8R2V2    ), 
ITPR3_BOVIN (Q8WN95    ), ITPR3_HUMAN (Q14573    ), ITPR3_MOUSE (P70227    ), 
ITPR3_RAT   (Q63269    ), K1C40_BOVIN (A7YWM2    ), K1C40_HUMAN (Q6A162    ), 
K1C40_MOUSE (Q6IFX3    ), KEX2_YEAST  (P13134    ), KI16B_HUMAN (Q96L93    ), 
KI16B_MOUSE (B1AVY7    ), LEU3_XYLFA  (Q9PAX3    ), LEU3_XYLFT  (Q87BQ1    ), 
LIPLL_LISMO (Q8Y489    ), LIPL_BACHD  (Q9K6A7    ), LIPL_GEOKA  (Q5KUD7    ), 
LRP2_HUMAN  (P98164    ), MAK5_VANPO  (A7TEG8    ), MIAA_SALAI  (A8M7W9    ), 
MIAA_SALTO  (A4X4W1    ), MRAZ_MYCGA  (Q7NB78    ), MTP_MESAU   (P55158    ), 
NADK_NITEU  (Q82UK6    ), NCPR_SALTR  (P19618    ), NHAK_BACP2  (A8FHE3    ), 
NPY2R_BOVIN (P79113    ), NPY2R_CAVPO (Q9Z2D5    ), NPY2R_HUMAN (P49146    ), 
NPY2R_MACMU (Q9GK74    ), NPY2R_MOUSE (P97295    ), NPY2R_PANTR (Q5IS62    ), 
NPY2R_PIG   (O02836    ), NUSB_COREF  (Q8FT35    ), NUSB_CORGL  (Q8NQ33    ), 
PANB_VEREI  (A1WDW4    ), POL1_TRSVB  (Q88893    ), PRMA_CLOAB  (P45558    ), 
PUR4_CAEEL  (Q19311    ), PUS10_AERPE (Q9YEN2    ), RDRP_SHMV   (P89202    ), 
RECA_LACAC  (Q5FL82    ), RECA_LACHE  (Q02348    ), RECA_LACJO  (P62216    ), 
RECA_RHOBA  (Q7UJJ0    ), RECA_RUMA7  (P49985    ), RECA_STRCT  (P41055    ), 
RIMM_CELJU  (B3PDH6    ), RSMA_GEOMG  (Q39W34    ), RTC5_PARBD  (C1G788    ), 
RUVB_ANADF  (A7H910    ), SAS6_CAEBR  (Q60P76    ), SECY_CHLMU  (Q9PJN1    ), 
SECY_CHLPN  (Q9Z7S5    ), SGO1_HUMAN  (Q5FBB7    ), SIN1_HUMAN  (Q9BPZ7    ), 
SIN1_PONAB  (Q5RDV5    ), SMC_BORPD   (A9II65    ), SRP_DROME   (P52172    ), 
STCE_EMENI  (Q00674    ), STE20_YARLI (Q6C3D7    ), SWT1_HUMAN  (Q5T5J6    ), 
SYA_SCHPO   (O13914    ), SYG_BDEBA   (Q6MNT9    ), SYG_BIFLO   (Q8G7W9    ), 
SYG_BOMMO   (Q04451    ), SYG_CAEEL   (Q10039    ), SYG_CLOAB   (Q97EB8    ), 
SYG_CLOPE   (Q8XHL9    ), SYG_COREF   (Q8FNG6    ), SYG_CORGL   (Q8NNC6    ), 
SYG_DEIRA   (Q9RSR5    ), SYG_LEIXX   (Q6AHF7    ), SYG_MESFL   (Q6F1J8    ), 
SYG_MYCBO   (P67033    ), SYG_MYCPA   (Q73Y21    ), SYG_MYCPE   (Q8EW64    ), 
SYG_MYCTO   (P9WFV6    ), SYG_MYCTU   (P9WFV7    ), SYG_NOCFA   (Q5YZT7    ), 
SYG_PROAC   (Q6A964    ), SYG_STRAW   (Q82BR9    ), SYG_STRCO   (Q9L2H9    ), 
SYH_MYCPA   (P60917    ), SYI_CLOPE   (Q8XHE4    ), SYM_META3   (A6UUN1    ), 
SYR_CLOAB   (Q97K78    ), SYR_CLOPE   (Q8XJU2    ), SYR_LACSS   (Q38VQ9    ), 
SYV_COREF   (Q8FN65    ), SYV_CORGL   (Q8NN37    ), SYV_CORJK   (Q4JWU8    ), 
SYV_NOCFA   (Q5Z048    ), T2BB_BACIU  (P33562    ), TBCD1_HUMAN (Q86TI0    ), 
TDCD_ECO57  (Q8XAF1    ), TDCD_ECOL6  (P59244    ), THTPA_RAT   (Q8CGV7    ), 
TOF1_PICST  (A3LR41    ), TPC1_HUMAN  (Q9ULQ1    ), TPC1_MOUSE  (Q9EQJ0    ), 
TPC1_RAT    (Q9WTN5    ), TRH_DROME   (Q24119    ), TRPC_HALSA  (Q9HSC1    ), 
UL148_HCMVM (F5H8Q3    ), UREG_SPOPA  (Q9RP19    ), VAM6_SCHPO  (O13955    ), 
Y076_OSHVF  (Q6R7F3    ), Y256_BUCBP  (Q89AL2    ), Y765_SPHAL  (Q1GV37    ), 
Y942_METJA  (Q58352    ), YDGH_BACSU  (P96706    ), YHJV_ECOLI  (P37660    ), 
YIDF_SCHPO  (Q9UTC4    ), YL581_MIMIV (Q5UR55    ), YR406_MIMIV (Q5UQK2    ), 
ZBT26_HUMAN (Q9HCK0    ), ZN287_MOUSE (Q9EQB9    )
» more

PDB
[Detailed view]
219 PDB

1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QMO; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WBF; 1WBL; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D3S; 2D7F; 2DH1; 2DTW; 2DTY; 2DU0; 2DU1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2E51; 2E53; 2E7Q; 2E7T; 2EF6; 2EIG; 2ENR; 2FMD; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 2ZMK; 2ZML; 2ZMN; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3UJO; 3UJQ; 3UK9; 3UL2; 3WCR; 3WCS; 3WOG; 4CZS; 4D69; 4DPN; 4H55; 4I30; 4K1Y; 4K1Z; 4K20; 4K21; 4M3C; 4MYE; 4NOT; 4P14; 4P9W; 4P9X; 4P9Y; 4PCR; 4PF5; 4TYS; 4TZD; 4U2A; 4U36; 4WV8; 4XTM; 4XTP; 4XXA; 4Z8B; 5AVA; 5BYN; 5CNA; 5EYX; 5EYY
» more

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