Entry: PS00307

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General information about the entry

Entry name [info] LECTIN_LEGUME_BETA
Accession [info] PS00307
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); JUL-1998 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00278

Name and characterization of the entry

Description [info] Legume lectins beta-chain signature.
Pattern [info]
[LIV]-[STAG]-V-[DEQV]-[FLI]-D-[ST].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 257 in 257 different sequences
Number of true positive hits 90 in 90 different sequences
Number of 'unknown' hits
Number of false positive hits 167 in 167 different sequences
Number of false negative sequences 33
Number of 'partial' sequences 9
Precision (true positives / (true positives + false positives)) 35.02 %
Recall (true positives / (true positives + false negatives)) 73.17 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] manganese at position 4
Site [info] manganese_calcium at position 6
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
90 sequences

ARC1_PHAVU  (P19329), ARC2_PHAVU  (P19330), ARC4_PHAVU  (Q43629), 
BGA16_ARATH (Q8GX69), CONA_CANBR  (P55915), CONA_CANCT  (P81461), 
CONA_CANEN  (P02866), CONA_CANGL  (P14894), CONA_CANLI  (P81460), 
CONA_CANRO  (P81364), LCB1_ROBPS  (Q41159), LCB2_ROBPS  (Q42372), 
LCB3_ROBPS  (Q41160), LCS1_ROBPS  (Q41162), LCS2_ROBPS  (Q41161), 
LEA1_PHAVU  (P02873), LEA2_PHAVU  (Q41114), LEC1_CLAKE  (Q39528), 
LEC1_CRAMO  (P83721), LEC1_CYTSE  (P22970), LEC1_LABAL  (P23558), 
LEC1_MEDTR  (Q01806), LEC1_PSOTE  (O24313), LEC1_ULEEU  (P22972), 
LEC1_VIGUC  (P05045), LEC2_CLAKE  (Q39529), LEC2_CYTSC  (P29257), 
LEC2_CYTSE  (P22971), LEC2_MEDTR  (Q01807), LEC2_ULEEU  (P22973), 
LEC4_GRISI  (P24146), LEC5_VIGUC  (P19588), LECA2_LABPU (B3EWQ9), 
LECA_CANBN  (P58906), LECA_CRAFL  (P81517), LECA_CYMRO  (P86184), 
LECA_DIOGR  (P08902), LECA_DIOGU  (P81637), LECA_DIORO  (P58908), 
LECA_DIOSC  (B3EWJ2), LECA_DIOVI  (P58907), LECA_DIOVO  (P58909), 
LECA_DIOWI  (P86624), LECA_LABPU  (P38662), LECA_SPAPA  (P86352), 
LECB_LATOC  (P04122), LECB_SPAPA  (P86353), LECB_STYJP  (P93538), 
LECC1_ARAHY (Q70DJ5), LECG_ARAHY  (P02872), LECR_CLAKE  (Q39527), 
LECS_STYJP  (P93535), LECS_VATGU  (P86893), LECS_VATMA  (P81371), 
LEC_BAUPU   (P16030), LEC_ERYCG   (P83410), LEC_ERYCO   (P16404), 
LEC_LATSP   (P16349), LEC_LENCC   (Q93WH6), LEC_LENCO   (Q93X49), 
LEC_LENCT   (Q8VXF2), LEC_LENCU   (P02870), LEC_LEUMI   (P42088), 
LEC_LOTTE   (P19664), LEC_ONOVI   (P02874), LEC_PEA     (P02867), 
LEC_PHALU   (P16300), LEC_SOYBN   (P05046), LEC_VACFA   (P84849), 
LEC_VICFA   (P02871), LEC_VICVI   (P56625), LK110_ARATH (Q3E884), 
LRK12_ARATH (Q7FK82), LRK16_ARATH (Q9M1G3), LRK17_ARATH (Q9LSS0), 
LRK19_ARATH (Q9LSR8), LRK22_ARATH (Q9FIF0), LRK32_ARATH (Q9ZW11), 
LRK43_ARATH (O81292), LRK51_ARATH (O04534), LRK59_ARATH (Q9SZD5), 
LRK81_ARATH (Q9LFH9), LRK82_ARATH (Q9LYX1), LRKS1_ARATH (Q9M9E0), 
LRKS5_ARATH (Q9FG33), LRKS6_ARATH (Q9FHX3), PHAE_PHAVU  (P05088), 
PHAL_PHAVU  (P05087), PHAM_PHAVU  (P15231), YOUB_SCHPO  (O74793)
» More

UniProtKB/Swiss-Prot
False negative sequences
33 sequences

AR5A_PHAVU  (Q42460), AR5B_PHAVU  (Q41116), LEC2_CYMRO  (P86795), 
LECN_PEA    (P16270), LECR_PEA    (Q40987), LK111_ARATH (Q9FJI4), 
LRK11_ARATH (Q9M3E5), LRK13_ARATH (Q9M3D8), LRK14_ARATH (Q9M3D7), 
LRK15_ARATH (Q9M1G4), LRK18_ARATH (Q9LSR9), LRK21_ARATH (Q9FIF1), 
LRK31_ARATH (Q9ZW09), LRK41_ARATH (O80939), LRK42_ARATH (Q9M345), 
LRK44_ARATH (O81291), LRK52_ARATH (O04533), LRK53_ARATH (O22834), 
LRK54_ARATH (O22833), LRK55_ARATH (Q96285), LRK56_ARATH (Q9LEA3), 
LRK57_ARATH (Q9ZR79), LRK58_ARATH (Q9M1Z9), LRK61_ARATH (Q9SR87), 
LRK62_ARATH (Q9M021), LRK63_ARATH (Q9M020), LRK64_ARATH (Q66GN2), 
LRK71_ARATH (Q9S9U1), LRK72_ARATH (O49445), LRK91_ARATH (Q9LXA5), 
LRK92_ARATH (Q9LSL5), LRKS4_ARATH (Q9M2S4), LRKS7_ARATH (Q9FHG4)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
9 sequences

LEAH_PHAVU  (P81870), LEC3_ULEEU  (P23032), LEC_CROJU   (P16352), 
LEC_CROPI   (P16351), LEC_DELRE   (P83511), LEC_MACAX   (P02875), 
LG29_VIGUS  (P83955), LG31_VIGUS  (P83956), PVAP_PHAVU  (P84869)
» More

UniProtKB/Swiss-Prot
False positive sequences
167 sequences

3DHQ_PODAN  (Q86ZM3), A92_SSV1    (P0C6K8), ACKA_TREDE  (Q73P66), 
AMO_ARATH   (Q8H1H9), AROB_BORBR  (Q7WR84), AROB_BORPA  (Q7W2B6), 
AROB_BORPE  (Q7VT93), BGALA_NEOFI (A1D1Z9), BGL21_ORYSJ (Q60DY1), 
BI1_ORYSJ   (Q9MBD8), BIN3D_ARATH (Q6NPC9), CARP3_CANAL (P0CY29), 
CARP3_CANAW (C4YNQ5), CARP3_CANAX (P0CY28), CDHR1_DANRE (Q6B3P0), 
CLPC_CHLMU  (Q9PKA8), CLPC_CHLTR  (O84288), CNOT1_DANRE (A1A5H6), 
CNOT1_HUMAN (A5YKK6), CNOT1_MOUSE (Q6ZQ08), CNOT1_XENTR (A0JP85), 
COAX_DEIRA  (Q9RX54), COBG_PSEDE  (P21637), COXX_HALS3  (B0R3W4), 
COXX_HALSA  (Q9HRJ8), DPO1_RICCN  (Q92GB7), DPO1_RICFE  (Q9RAA9), 
DPO1_RICHE  (Q9RLB6), EGLN_MOUSE  (Q63961), ENV_FRSFL   (P03394), 
EPIP1_EPIPU (P83340), ERA_STRGC   (O24756), ERA_STRMU   (P37214), 
EXU2_DROPS  (Q24617), EXU_DROME   (P28750), EXU_DROVI   (Q24747), 
FCGRN_MOUSE (Q61559), FCGRN_RAT   (P13599), FMN2_HUMAN  (Q9NZ56), 
GATC_POPTR  (B9INH0), GDL13_ARATH (Q38894), GEFV_DICDI  (Q55FD8), 
HEXB_FELCA  (P49614), HIS7_LEGPA  (Q5X5X1), HIS7_LEGPH  (Q5ZW89), 
HIS7_LEGPL  (Q5WX93), I5P2_HUMAN  (P32019), IFFO1_HUMAN (Q0D2I5), 
IFFO1_MOUSE (Q8BXL9), IFFO2_HUMAN (Q5TF58), IFFO2_MOUSE (Q8R2V2), 
ITPR3_BOVIN (Q8WN95), ITPR3_HUMAN (Q14573), ITPR3_MOUSE (P70227), 
ITPR3_RAT   (Q63269), K1C40_BOVIN (A7YWM2), K1C40_HUMAN (Q6A162), 
K1C40_MOUSE (Q6IFX3), KEX2_YEAST  (P13134), KI16B_HUMAN (Q96L93), 
KI16B_MOUSE (B1AVY7), LEU3_XYLFA  (Q9PAX3), LEU3_XYLFT  (Q87BQ1), 
LIPLL_LISMO (Q8Y489), LIPL_BACHD  (Q9K6A7), LIPL_GEOKA  (Q5KUD7), 
LRP2_HUMAN  (P98164), MAK5_VANPO  (A7TEG8), MIAA_SALAI  (A8M7W9), 
MIAA_SALTO  (A4X4W1), MRAZ_MYCGA  (Q7NB78), MTP_MESAU   (P55158), 
NCPR_SALTR  (P19618), NHAK_BACP2  (A8FHE3), NPY2R_BOVIN (P79113), 
NPY2R_CAVPO (Q9Z2D5), NPY2R_HUMAN (P49146), NPY2R_MACMU (Q9GK74), 
NPY2R_MOUSE (P97295), NPY2R_PANTR (Q5IS62), NPY2R_PIG   (O02836), 
NUSB_COREF  (Q8FT35), NUSB_CORGL  (Q8NQ33), PANB_VEREI  (A1WDW4), 
POL1_TRSVB  (Q88893), PPNK_NITEU  (Q82UK6), PRMA_CLOAB  (P45558), 
PUR4_CAEEL  (Q19311), PUS10_AERPE (Q9YEN2), RDRP_SHMV   (P89202), 
RECA_LACAC  (Q5FL82), RECA_LACHE  (Q02348), RECA_LACJO  (P62216), 
RECA_RHOBA  (Q7UJJ0), RECA_RUMA7  (P49985), RECA_STRCT  (P41055), 
RIMM_CELJU  (B3PDH6), RSMA_GEOMG  (Q39W34), RTC5_PARBD  (C1G788), 
RUVB_ANADF  (A7H910), SAS6_CAEBR  (Q60P76), SECY_CHLMU  (Q9PJN1), 
SECY_CHLPN  (Q9Z7S5), SGOL1_HUMAN (Q5FBB7), SIN1_HUMAN  (Q9BPZ7), 
SIN1_PONAB  (Q5RDV5), SMC_BORPD   (A9II65), SRP_DROME   (P52172), 
STCE_EMENI  (Q00674), STE20_YARLI (Q6C3D7), SWT1_HUMAN  (Q5T5J6), 
SYA_SCHPO   (O13914), SYG_BDEBA   (Q6MNT9), SYG_BIFLO   (Q8G7W9), 
SYG_BOMMO   (Q04451), SYG_CAEEL   (Q10039), SYG_CLOAB   (Q97EB8), 
SYG_CLOPE   (Q8XHL9), SYG_COREF   (Q8FNG6), SYG_CORGL   (Q8NNC6), 
SYG_DEIRA   (Q9RSR5), SYG_LEIXX   (Q6AHF7), SYG_MESFL   (Q6F1J8), 
SYG_MYCBO   (P67033), SYG_MYCPA   (Q73Y21), SYG_MYCPE   (Q8EW64), 
SYG_MYCTO   (P9WFV6), SYG_MYCTU   (P9WFV7), SYG_NOCFA   (Q5YZT7), 
SYG_PROAC   (Q6A964), SYG_STRAW   (Q82BR9), SYG_STRCO   (Q9L2H9), 
SYH_MYCPA   (P60917), SYI_CLOPE   (Q8XHE4), SYM_META3   (A6UUN1), 
SYR_CLOAB   (Q97K78), SYR_CLOPE   (Q8XJU2), SYR_LACSS   (Q38VQ9), 
SYV_COREF   (Q8FN65), SYV_CORGL   (Q8NN37), SYV_CORJK   (Q4JWU8), 
SYV_NOCFA   (Q5Z048), T2BB_BACIU  (P33562), TBCD1_HUMAN (Q86TI0), 
TDCD_ECO57  (Q8XAF1), TDCD_ECOL6  (P59244), THTPA_RAT   (Q8CGV7), 
TOF1_PICST  (A3LR41), TPC1_HUMAN  (Q9ULQ1), TPC1_MOUSE  (Q9EQJ0), 
TPC1_RAT    (Q9WTN5), TRH_DROME   (Q24119), TRPC_HALSA  (Q9HSC1), 
UL148_HCMVM (F5H8Q3), UREG_SPOPA  (Q9RP19), VAM6_SCHPO  (O13955), 
Y076_OSHVF  (Q6R7F3), Y256_BUCBP  (Q89AL2), Y765_SPHAL  (Q1GV37), 
Y942_METJA  (Q58352), YDGH_BACSU  (P96706), YHJV_ECOLI  (P37660), 
YIDF_SCHPO  (Q9UTC4), YL581_MIMIV (Q5UR55), YR406_MIMIV (Q5UQK2), 
ZBT26_HUMAN (Q9HCK0), ZN287_MOUSE (Q9EQB9)
» More

PDB
[Detailed view]
188 PDB

1APN; 1AVB; 1AX0; 1AX1; 1AX2; 1AXY; 1AXZ; 1AZD; 1BJQ; 1BQP; 1BXH; 1BZW; 1C57; 1CES; 1CIW; 1CJP; 1CN1; 1CON; 1CQ9; 1CR7; 1CVN; 1DHK; 1DQ0; 1DQ1; 1DQ2; 1DQ4; 1DQ5; 1DQ6; 1ENQ; 1ENR; 1ENS; 1FAT; 1FNY; 1FNZ; 1FX5; 1FYU; 1G7Y; 1G8W; 1G9F; 1GIC; 1GKB; 1GSL; 1GZ9; 1GZC; 1H9P; 1H9W; 1HKD; 1HQW; 1I3H; 1JBC; 1JN2; 1JOJ; 1JUI; 1JW6; 1JXN; 1JYC; 1JYI; 1LEC; 1LED; 1LEM; 1LEN; 1LES; 1LGB; 1LGC; 1LOA; 1LOB; 1LOC; 1LOD; 1LOE; 1LOF; 1LOG; 1LTE; 1LU1; 1LU2; 1LUL; 1MVQ; 1N47; 1NLS; 1NXD; 1OFS; 1ONA; 1QDC; 1QDO; 1QF3; 1QGL; 1QNW; 1QNY; 1RIN; 1RIR; 1RIT; 1SBD; 1SBE; 1SBF; 1SCR; 1SCS; 1SFY; 1TEI; 1V6I; 1V6J; 1V6K; 1V6L; 1V6M; 1V6N; 1V6O; 1VAL; 1VAM; 1VIW; 1VLN; 1WBF; 1WBL; 1WUV; 1XQN; 2A7A; 2B7Y; 2BQP; 2CNA; 2CTV; 2CWM; 2CY6; 2CYF; 2D3P; 2D3R; 2D3S; 2D7F; 2DH1; 2DTW; 2DTY; 2DU0; 2DU1; 2DV9; 2DVA; 2DVB; 2DVD; 2DVF; 2DVG; 2E51; 2E53; 2E7Q; 2E7T; 2EF6; 2EIG; 2ENR; 2FMD; 2G4I; 2GDF; 2JDZ; 2JE7; 2JE9; 2JEC; 2LAL; 2LTN; 2OVU; 2OW4; 2P2K; 2P34; 2P37; 2PEL; 2SBA; 2TEP; 2UU8; 2YZ4; 2ZBJ; 2ZMK; 2ZML; 2ZMN; 3CNA; 3D4K; 3ENR; 3IPV; 3JU9; 3N35; 3N36; 3N3H; 3NWK; 3QLQ; 3RRD; 3RS6; 3SH3; 3SNM; 3UJO; 3UJQ; 3UK9; 3UL2; 4DPN; 4H55; 4I30; 4M3C; 5CNA
» More

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