Entry: PS00311

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General information about the entry

Entry name [info] LAMP_2
Accession [info] PS00311
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); JUN-1994 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00280

Name and characterization of the entry

Description [info] LAMP glycoproteins transmembrane and cytoplasmic domain signature.
Pattern [info]
C-x(2)-D-x(3,4)-[LIVM](2)-P-[LIVM]-x-[LIVM]-G-x(2)-[LIVM]-x-G-[LIVM](2)-
x-[LIVM](4)-A-[FY]-x-[LIVM]-x(2)-[KR]-[RH]-x(1,2)-[STAG](2)-Y-[EQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 12 in 12 different sequences
Number of true positive hits 12 in 12 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 92.31 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
12 sequences

CD68_HUMAN  (P34810), CD68_MOUSE  (P31996), LAMP1_BOVIN (Q05204), 
LAMP1_CHICK (P05300), LAMP1_CRIGR (P49129), LAMP1_HUMAN (P11279), 
LAMP1_MOUSE (P11438), LAMP1_RAT   (P14562), LAMP2_CRIGR (P49130), 
LAMP2_HUMAN (P13473), LAMP2_MOUSE (P17047), LAMP2_RAT   (P17046)
» More

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

LAMP2_CHICK (Q90617)

		

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