Entry: PS00320

General information about the entry
Entry name A4_INTRA
Accession number PS00320
Entry type PATTERN
Date APR-1990 (CREATED); OCT-1993 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00204
Name and characterization of the entry
DescriptionAmyloidogenic glycoprotein intracellular domain signature.
Pattern G-Y-E-N-P-T-Y-[KR].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 16 hits in 16 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 16 hits in 16 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 0
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 7
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 100.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
A4_CAVPO    (Q60495), A4_DROME    (P14599), A4_HUMAN    (P05067), 
A4_MACFA    (P53601), A4_MOUSE    (P12023), A4_PANTR    (Q5IS80), 
A4_PIG      (P79307), A4_RAT      (P08592), A4_SAISC    (Q95241), 
A4_TAKRU    (O93279), A4_TETFL    (O73683), APLP1_HUMAN (P51693), 
APLP1_MOUSE (Q03157), APLP2_HUMAN (Q06481), APLP2_MOUSE (Q06335), 
APLP2_RAT   (P15943)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
A4_BOVIN    (Q28053), A4_CANFA    (Q28280), A4_FELCA    (P86906), 
A4_MACMU    (P29216), A4_RABIT    (Q28748), A4_SHEEP    (Q28757), 
A4_URSMA    (Q29149)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1OQN; 1X11; 2ROZ; 2YSZ; 2YT0; 2YT1; 3DXC; 3DXD; 3DXE; 3SV1;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or