Entry: PS00327

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General information about the entry

Entry name [info] BACTERIAL_OPSIN_RET
Accession [info] PS00327
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00291

Name and characterization of the entry

Description [info] Bacterial rhodopsins retinal binding site.
Pattern [info]
[FYIV]-{ND}-[FYVG]-[LIVM]-D-[LIVMF]-x-[STA]-K-x-{K}-[FY].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 40 in 40 different sequences
Number of true positive hits 25 in 25 different sequences
Number of 'unknown' hits
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 62.50 %
Recall (true positives / (true positives + false negatives)) 92.59 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] retinal at position 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
25 sequences

BAC3_HALVA  (Q48334), BACH_HALAR  (Q53461), BACH_HALHP  (Q48315), 
BACH_HALHS  (Q48314), BACH_HALSA  (P16102), BACH_HALSD  (O93742), 
BACH_HALSS  (P33742), BACH_HALVA  (P94853), BACH_NATPH  (P15647), 
BACR1_HALC1 (P69051), BACR1_HALSS (P69052), BACR2_HALS2 (P29563), 
BACR3_HALSD (P96787), BACR_HALAR  (Q57101), BACR_HALS4  (O93740), 
BACR_HALSA  (P02945), BACR_HALSR  (Q53496), BACR_HALVA  (P94854), 
BACS1_HALSA (P25964), BACS1_HALSS (P33743), BACS2_HALSA (P71411), 
BACS2_HALVA (P42197), BACS2_NATPH (P42196), BACS_HALSD  (O93743), 
NOP1_NEUCR  (Q9UW81)
» More

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

PRRB_PRB02  (Q9AFF7), PRRG_PRB01  (Q9F7P4)

		
UniProtKB/Swiss-Prot
'Partial' sequences
4 sequences

BACH_HALHM  (P33970), BACR_HALHM  (P33969), BACR_HALHP  (P33971), 
BACR_HALHS  (P33972)
» More

UniProtKB/Swiss-Prot
False positive sequences
15 sequences

EFG2_PSEHT  (Q3IJW9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), 
GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), 
GLS24_STRPQ (P0CZ87), LIS11_POSPM (B8P4B0), LIS12_POSPM (B8PD53), 
PROB_LEPIC  (Q72NQ8), PROB_LEPIN  (P94871), RAB6C_HUMAN (Q9H0N0), 
TRMB_CHLAA  (A9WHH4), TRMB_CHLAD  (B8GAY2), TRMB_CHLSY  (B9LBT1)
» More

PDB
[Detailed view]
104 PDB

1AP9; 1AT9; 1BCT; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1JV7; 1KG8; 1KG9; 1KGB; 1KME; 1M0K; 1M0L; 1M0M; 1MGY; 1O0A; 1P8H; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1Q5J; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1S8J; 1S8L; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3COD; 3HAN; 3HAO; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 3VHZ; 3VI0; 4GYC; 4HWL; 4HYX
» More

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