Entry: PS00327

General information about the entry
Entry name BACTERIAL_OPSIN_RET
Accession number PS00327
Entry type PATTERN
Date APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00291
Name and characterization of the entry
DescriptionBacterial rhodopsins retinal binding site.
Pattern [FYIV]-{ND}-[FYVG]-[LIVM]-D-[LIVMF]-x-[STA]-K-x-{K}-[FY].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 40 hits in 40 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 25 hits in 25 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 15 hits in 15 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 4
  • Precision (true hits / (true hits + false positives)): 62.50 %
  • Recall (true hits / (true hits + false negatives)): 92.59 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 9,retinal
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BAC3_HALVA  (Q48334), BACH_HALAR  (Q53461), BACH_HALHP  (Q48315), 
BACH_HALHS  (Q48314), BACH_HALSA  (P16102), BACH_HALSD  (O93742), 
BACH_HALSS  (P33742), BACH_HALVA  (P94853), BACH_NATPH  (P15647), 
BACR1_HALS1 (P69051), BACR1_HALSS (P69052), BACR2_HALS2 (P29563), 
BACR3_HALSD (P96787), BACR_HALAR  (Q57101), BACR_HALS4  (O93740), 
BACR_HALSA  (P02945), BACR_HALSR  (Q53496), BACR_HALVA  (P94854), 
BACS1_HALSA (P25964), BACS1_HALSS (P33743), BACS2_HALSA (P71411), 
BACS2_HALVA (P42197), BACS2_NATPH (P42196), BACS_HALSD  (O93743), 
NOP1_NEUCR  (Q9UW81)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PRRB_PRB02  (Q9AFF7), PRRG_PRB01  (Q9F7P4)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
BACH_HALHM  (P33970), BACR_HALHM  (P33969), BACR_HALHP  (P33971), 
BACR_HALHS  (P33972)
False positive hits (sequences which do not belong to the set under consideration):
EFG2_PSEHT  (Q3IJW9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), 
GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), 
GLS24_STRPQ (P0CZ87), LIS11_POSPM (B8P4B0), LIS12_POSPM (B8PD53), 
PROB_LEPIC  (Q72NQ8), PROB_LEPIN  (P94871), RAB6C_HUMAN (Q9H0N0), 
TRMB_CHLAA  (A9WHH4), TRMB_CHLAD  (B8GAY2), TRMB_CHLSY  (B9LBT1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AP9; 1AT9; 1BAC; 1BAD; 1BCT; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1JV7; 1KG8; 1KG9; 1KGB; 1KME; 1M0K; 1M0L; 1M0M; 1MGY; 1O0A; 1P8H; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1Q5J; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1S8J; 1S8L; 1SR1; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3COD; 3HAN; 3HAO; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 3VHZ; 3VI0;

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