Entry: PS00327

General information about the entry

Entry name [info] BACTERIAL_OPSIN_RET
Accession [info] PS00327
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00291

Name and characterization of the entry

Description [info] Bacterial rhodopsins retinal binding site.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_04 which contains 550'960 sequence entries.

Total number of hits 48 in 48 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 68.75 %
Recall (true positives / (true positives + false negatives)) 94.29 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] retinal at position 9
Version [info] 1

Cross-references [info]

True positive sequences
33 sequences

BAC3_HALVA  (Q48334), BACH_HALAR  (Q53461), BACH_HALHP  (Q48315), 
BACH_HALHS  (Q48314), BACH_HALMA  (Q5V1N0), BACH_HALS3  (B0R2U4), 
BACH_HALSA  (P0DMH7), BACH_HALSD  (O93742), BACH_HALSS  (P33742), 
BACH_HALVA  (P94853), BACH_NATPH  (P15647), BACR1_HALC1 (P69051), 
BACR1_HALWD (Q18DH8), BACR2_HALS2 (P29563), BACR3_HALSD (P96787), 
BACR_HALAR  (Q57101), BACR_HALS4  (O93740), BACR_HALSA  (P02945), 
BACR_HALSR  (Q53496), BACR_HALVA  (P94854), BACS1_HALMA (Q5UXM9), 
BACS1_HALS3 (B0R633), BACS1_HALSA (P0DMH8), BACS1_HALSS (P33743), 
BACS2_HALMA (Q5V5V3), BACS2_HALSA (P71411), BACS2_HALVA (P42197), 
BACS2_NATPH (P42196), BACS_HALSD  (O93743), NOP1_NEUCR  (Q9UW81)
» more

False negative sequences
2 sequences

PRRB_PRB02  (Q9AFF7), PRRG_PRB01  (Q9F7P4)

'Partial' sequences
4 sequences

BACH_HALHM  (P33970), BACR_HALHM  (P33969), BACR_HALHP  (P33971), 
BACR_HALHS  (P33972)
» more

False positive sequences
15 sequences

EFG2_PSEHT  (Q3IJW9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), 
GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), 
GLS24_STRPQ (P0CZ87), LIS11_POSPM (B8P4B0), LIS12_POSPM (B8PD53), 
» more

[Detailed view]
120 PDB

1AP9; 1AT9; 1BCT; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1JV7; 1KG8; 1KG9; 1KGB; 1KME; 1M0K; 1M0L; 1M0M; 1MGY; 1O0A; 1P8H; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1Q5J; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1S8J; 1S8L; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3COD; 3HAN; 3HAO; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 3VHZ; 3VI0; 3WQJ; 4GYC; 4HWL; 4HYX; 4JR8; 4L35; 4MD1; 4MD2; 4OV0; 4PXK; 4QI1; 4QID; 4WAV; 4X31; 4X32; 5A44; 5A45; 5AHY; 5AHZ
» more

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