Entry: PS00327

General information about the entry

Entry name [info] BACTERIAL_OPSIN_RET
Accession [info] PS00327
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); DEC-2004 (DATA UPDATE); MAR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00291

Name and characterization of the entry

Description [info] Bacterial rhodopsins retinal binding site.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_05 which contains 548'454 sequence entries.

Total number of hits 48 in 48 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 2
Number of 'partial' sequences 4
Precision (true positives / (true positives + false positives)) 68.75 %
Recall (true positives / (true positives + false negatives)) 94.29 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] retinal at position 9
Version [info] 1

Cross-references [info]

True positive sequences
33 sequences

BAC3_HALVA  (Q48334), BACH_HALAR  (Q53461), BACH_HALHP  (Q48315), 
BACH_HALHS  (Q48314), BACH_HALMA  (Q5V1N0), BACH_HALS3  (B0R2U4), 
BACH_HALSA  (P0DMH7), BACH_HALSD  (O93742), BACH_HALSS  (P33742), 
BACH_HALVA  (P94853), BACH_NATPH  (P15647), BACR1_HALC1 (P69051), 
BACR1_HALWD (Q18DH8), BACR2_HALS2 (P29563), BACR3_HALSD (P96787), 
BACR_HALAR  (Q57101), BACR_HALS4  (O93740), BACR_HALSA  (P02945), 
BACR_HALSR  (Q53496), BACR_HALVA  (P94854), BACS1_HALMA (Q5UXM9), 
BACS1_HALS3 (B0R633), BACS1_HALSA (P0DMH8), BACS1_HALSS (P33743), 
BACS2_HALMA (Q5V5V3), BACS2_HALSA (P71411), BACS2_HALVA (P42197), 
BACS2_NATPH (P42196), BACS_HALSD  (O93743), NOP1_NEUCR  (Q9UW81)
» More

False negative sequences
2 sequences

PRRB_PRB02  (Q9AFF7), PRRG_PRB01  (Q9F7P4)

'Partial' sequences
4 sequences

BACH_HALHM  (P33970), BACR_HALHM  (P33969), BACR_HALHP  (P33971), 
BACR_HALHS  (P33972)
» More

False positive sequences
15 sequences

EFG2_PSEHT  (Q3IJW9), GLS24_STRP1 (Q99ZE5), GLS24_STRP3 (P0CZ86), 
GLS24_STRP6 (Q5XBW6), GLS24_STRP8 (Q7CN70), GLS24_STRPM (Q48TA2), 
GLS24_STRPQ (P0CZ87), LIS11_POSPM (B8P4B0), LIS12_POSPM (B8PD53), 
» More

[Detailed view]
110 PDB

1AP9; 1AT9; 1BCT; 1BM1; 1BRD; 1BRR; 1BRX; 1C3W; 1C8R; 1C8S; 1CWQ; 1DZE; 1E0P; 1E12; 1F4Z; 1F50; 1FBB; 1GU8; 1GUE; 1H2S; 1H68; 1IW6; 1IW9; 1IXF; 1JGJ; 1JV7; 1KG8; 1KG9; 1KGB; 1KME; 1M0K; 1M0L; 1M0M; 1MGY; 1O0A; 1P8H; 1P8U; 1PXR; 1PXS; 1PY6; 1Q5I; 1Q5J; 1QHJ; 1QKO; 1QKP; 1QM8; 1R2N; 1R84; 1S51; 1S52; 1S53; 1S54; 1S8J; 1S8L; 1TN0; 1TN5; 1UAZ; 1UCQ; 1VGO; 1VJM; 1X0I; 1X0K; 1X0S; 1XJI; 2AT9; 2BRD; 2EI4; 2F93; 2F95; 2I1X; 2I20; 2I21; 2JAF; 2JAG; 2NTU; 2NTW; 2WJK; 2WJL; 2Z55; 2ZFE; 2ZZL; 3COC; 3COD; 3HAN; 3HAO; 3HAP; 3HAQ; 3HAR; 3HAS; 3MBV; 3NS0; 3NSB; 3QAP; 3QDC; 3T45; 3UTV; 3UTW; 3UTX; 3UTY; 3VHZ; 3VI0; 3WQJ; 4GYC; 4HWL; 4HYX; 4JR8; 4L35; 4OV0; 4X31; 4X32
» More

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