Entry: PS00333

General information about the entry

Entry name [info] DNA_LIGASE_A2
Accession [info] PS00333
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00295

Name and characterization of the entry

Description [info] ATP-dependent DNA ligase signature 2.
Pattern [info]
E-G-[LIVMA]-[LIVM]-[LIVMA]-[KR]-x(5,8)-[YW]-[QNEKTI]-x(2,6)-[KRH]-x(3,5)-
K-[LIVMFY]-K.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 103 in 103 different sequences
Number of true positive hits 103 in 103 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 54
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 65.61 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
103 sequences

DNLI1_ARATH (Q42572    ), DNLI1_CAEEL (Q27474    ), DNLI1_DICDI (Q869E1    ), 
DNLI1_DROME (Q9W1H4    ), DNLI1_HALWD (Q18HT7    ), DNLI1_HUMAN (P18858    ), 
DNLI1_KORCO (B1L3K8    ), DNLI1_MOUSE (P37913    ), DNLI1_RAT   (Q9JHY8    ), 
DNLI1_SCHPO (P12000    ), DNLI1_XENLA (P51892    ), DNLI1_YEAST (P04819    ), 
DNLI2_KORCO (B1L3V2    ), DNLI3_DICDI (Q54QM4    ), DNLI3_HUMAN (P49916    ), 
DNLI3_MOUSE (P97386    ), DNLI4_ARATH (Q9LL84    ), DNLI4_CANAL (P52496    ), 
DNLI4_CHICK (Q90YB1    ), DNLI4_COPC7 (A8N936    ), DNLI4_COPCI (Q7Z7W5    ), 
DNLI4_CRYNB (P0CN09    ), DNLI4_CRYNJ (P0CN08    ), DNLI4_HUMAN (P49917    ), 
DNLI4_MOUSE (Q8BTF7    ), DNLI4_ORYSJ (Q7X7E9    ), DNLI4_PONAB (Q5R6L3    ), 
DNLI4_YEAST (Q08387    ), DNLI_ACIAM  (Q02093    ), DNLI_AERPE  (Q9YD18    ), 
DNLI_ANAD2  (B8JBM1    ), DNLI_ANADE  (Q2IH69    ), DNLI_ANADF  (A7HID3    ), 
DNLI_ANASK  (B4UIS1    ), DNLI_ARCFU  (O29632    ), DNLI_ASFB7  (P35970    ), 
DNLI_ASFK5  (P0C992    ), DNLI_ASFM2  (P26813    ), DNLI_ASFP4  (P0C990    ), 
DNLI_ASFWA  (P0C991    ), DNLI_BEUC1  (C5BW79    ), DNLI_BPT3   (P07717    ), 
DNLI_BPT4   (P00970    ), DNLI_BPT6   (P19088    ), DNLI_BPT7   (P00969    ), 
DNLI_DICT6  (B5YD88    ), DNLI_DICTD  (B8DZX8    ), DNLI_HAEIN  (P44121    ), 
DNLI_HYPBU  (A2BJX6    ), DNLI_IGNH4  (A8AB20    ), DNLI_META3  (A6UVC4    ), 
DNLI_METB6  (A7IAA9    ), DNLI_METHJ  (Q2FTH4    ), DNLI_METJA  (Q57635    ), 
DNLI_METKA  (Q8TWN3    ), DNLI_METM5  (A4FY19    ), DNLI_METM6  (A9AAX4    ), 
DNLI_METM7  (A6VFQ9    ), DNLI_METMJ  (A3CWP1    ), DNLI_METMP  (Q6LYM1    ), 
DNLI_METS3  (A5UKX2    ), DNLI_METS5  (A4YD25    ), DNLI_METTF  (P54875    ), 
DNLI_METTH  (Q50566    ), DNLI_METTP  (A0B7F9    ), DNLI_METVS  (A6UNY0    ), 
DNLI_MYCA1  (A0QJL0    ), DNLI_MYCGI  (A4TDS2    ), DNLI_MYCPA  (Q73V97    ), 
DNLI_MYCS2  (A0QUP1    ), DNLI_MYCSJ  (A3PXE2    ), DNLI_MYCSK  (A1UDY9    ), 
DNLI_MYCSS  (Q1BB26    ), DNLI_MYCVP  (A1T6P2    ), DNLI_NITMS  (A9A3K1    ), 
DNLI_NOCSJ  (A1SKL2    ), DNLI_OPITP  (B1ZZL9    ), DNLI_PYRAB  (P0CL75    ), 
DNLI_PYRAY  (P0CL74    ), DNLI_PYRFU  (P56709    ), DNLI_PYRHO  (O59288    ), 
DNLI_SORC5  (A9GU24    ), DNLI_STAMF  (A3DP49    ), DNLI_SULAC  (Q4JAM1    ), 
DNLI_SULIA  (C3MZR1    ), DNLI_SULIK  (C4KIZ2    ), DNLI_SULIL  (C3MJ14    ), 
DNLI_SULIM  (C3MYD2    ), DNLI_SULIN  (C3NF77    ), DNLI_SULIY  (C3N834    ), 
DNLI_SULSH  (Q9P9K9    ), DNLI_SULSO  (Q980T8    ), DNLI_SULTO  (Q976G4    ), 
DNLI_SULZI  (D2CJS7    ), DNLI_THEAC  (Q9HJ26    ), DNLI_THEFM  (Q9HH07    ), 
DNLI_THEKO  (Q9HHC4    ), DNLI_THEON  (B6YTR4    ), DNLI_THEVO  (Q979A1    ), 
DNLI_VACCA  (O57250    ), DNLI_VACCC  (P20492    ), DNLI_VACCW  (P16272    ), 
DNLI_VAR67  (P33798    )
» more

UniProtKB/Swiss-Prot
False negative sequences
54 sequences

DNLI1_METAC (Q8TSR7    ), DNLI1_METBF (Q46C04    ), DNLI1_METMA (Q8PVR7    ), 
DNLI1_THEPD (A1RXA6    ), DNLI2_HALWD (Q18GX5    ), DNLI2_METAC (Q8TMT1    ), 
DNLI2_METBF (Q46BA3    ), DNLI2_METMA (Q8PTK1    ), DNLI2_THEPD (A1RY72    ), 
DNLI3_SCHPO (Q9C1W9    ), DNLI4_SCHPO (O74833    ), DNLI_AQUAE  (O67398    ), 
DNLI_CALMQ  (A8MDU6    ), DNLI_CENSY  (A0RWD6    ), DNLI_FOWPN  (Q67480    ), 
DNLI_HALLT  (B9LUZ9    ), DNLI_HALMA  (Q5V4R0    ), DNLI_HALS3  (B0R4C9    ), 
DNLI_HALSA  (Q9HR35    ), DNLI_HALVD  (D4GYZ4    ), DNLI_KINRD  (A6WG40    ), 
DNLI_KORVE  (Q1II25    ), DNLI_METAR  (Q0W0X1    ), DNLI_METBU  (Q12X08    ), 
DNLI_METLZ  (A2SR38    ), DNLI_METPE  (B8GGB8    ), DNLI_METST  (Q2NHF9    ), 
DNLI_MYCBO  (Q7TTR7    ), DNLI_MYCBP  (A1KN60    ), DNLI_MYCBT  (C1AGI1    ), 
DNLI_MYCMM  (B2HHE1    ), DNLI_MYCTA  (A5U776    ), DNLI_MYCTO  (P9WNV4    ), 
DNLI_MYCTU  (P9WNV5    ), DNLI_MYCUA  (A0PTC0    ), DNLI_NANEQ  (Q74M64    ), 
DNLI_NATPD  (Q3IPX0    ), DNLI_NOCFA  (Q5YNY7    ), DNLI_NPVLD  (Q9YMV2    ), 
DNLI_PERMH  (C0QSL7    ), DNLI_PICTO  (Q6L195    ), DNLI_PSECP  (B8HCE1    ), 
DNLI_PYRAE  (O93723    ), DNLI_PYRAR  (A4WH24    ), DNLI_PYRCJ  (A3MS62    ), 
DNLI_PYRIL  (A1RTK4    ), DNLI_PYRNV  (B1YA52    ), DNLI_RHOJR  (Q0SG75    ), 
DNLI_RHOOB  (C1AX87    ), DNLI_SACEN  (A4F870    ), DNLI_STRAW  (Q826P6    ), 
DNLI_STRCO  (Q9FCB1    ), DNLI_STRGG  (B1W5J2    ), LIGD_BACSU  (O34398    )
» more

PDB
[Detailed view]
8 PDB

1A0I; 2HIV; 2HIX; 3GDE; 3L2P; 3W1B; 3W1G; 3W5O

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