Entry: PS00333

General information about the entry

Entry name [info] DNA_LIGASE_A2
Accession [info] PS00333
Entry type [info] PATTERN
Date [info] APR-1990 (CREATED); APR-2006 (DATA UPDATE); MAR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00295

Name and characterization of the entry

Description [info] ATP-dependent DNA ligase signature 2.
Pattern [info]
E-G-[LIVMA]-[LIVM]-[LIVMA]-[KR]-x(5,8)-[YW]-[QNEKTI]-x(2,6)-[KRH]-x(3,5)-
K-[LIVMFY]-K.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_05 which contains 548'454 sequence entries.


Total number of hits 103 in 103 different sequences
Number of true positive hits 103 in 103 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 54
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 65.61 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
103 sequences

DNLI1_ARATH (Q42572), DNLI1_CAEEL (Q27474), DNLI1_DICDI (Q869E1), 
DNLI1_DROME (Q9W1H4), DNLI1_HALWD (Q18HT7), DNLI1_HUMAN (P18858), 
DNLI1_KORCO (B1L3K8), DNLI1_MOUSE (P37913), DNLI1_RAT   (Q9JHY8), 
DNLI1_SCHPO (P12000), DNLI1_XENLA (P51892), DNLI1_YEAST (P04819), 
DNLI2_KORCO (B1L3V2), DNLI3_DICDI (Q54QM4), DNLI3_HUMAN (P49916), 
DNLI3_MOUSE (P97386), DNLI4_ARATH (Q9LL84), DNLI4_CANAL (P52496), 
DNLI4_CHICK (Q90YB1), DNLI4_COPC7 (A8N936), DNLI4_COPCI (Q7Z7W5), 
DNLI4_CRYNB (P0CN09), DNLI4_CRYNJ (P0CN08), DNLI4_HUMAN (P49917), 
DNLI4_MOUSE (Q8BTF7), DNLI4_ORYSJ (Q7X7E9), DNLI4_PONAB (Q5R6L3), 
DNLI4_YEAST (Q08387), DNLI_ACIAM  (Q02093), DNLI_AERPE  (Q9YD18), 
DNLI_ANAD2  (B8JBM1), DNLI_ANADE  (Q2IH69), DNLI_ANADF  (A7HID3), 
DNLI_ANASK  (B4UIS1), DNLI_ARCFU  (O29632), DNLI_ASFB7  (P35970), 
DNLI_ASFK5  (P0C992), DNLI_ASFM2  (P26813), DNLI_ASFP4  (P0C990), 
DNLI_ASFWA  (P0C991), DNLI_BEUC1  (C5BW79), DNLI_BPT3   (P07717), 
DNLI_BPT4   (P00970), DNLI_BPT6   (P19088), DNLI_BPT7   (P00969), 
DNLI_DICT6  (B5YD88), DNLI_DICTD  (B8DZX8), DNLI_HAEIN  (P44121), 
DNLI_HYPBU  (A2BJX6), DNLI_IGNH4  (A8AB20), DNLI_META3  (A6UVC4), 
DNLI_METB6  (A7IAA9), DNLI_METHJ  (Q2FTH4), DNLI_METJA  (Q57635), 
DNLI_METKA  (Q8TWN3), DNLI_METM5  (A4FY19), DNLI_METM6  (A9AAX4), 
DNLI_METM7  (A6VFQ9), DNLI_METMJ  (A3CWP1), DNLI_METMP  (Q6LYM1), 
DNLI_METS3  (A5UKX2), DNLI_METS5  (A4YD25), DNLI_METTF  (P54875), 
DNLI_METTH  (Q50566), DNLI_METTP  (A0B7F9), DNLI_METVS  (A6UNY0), 
DNLI_MYCA1  (A0QJL0), DNLI_MYCGI  (A4TDS2), DNLI_MYCPA  (Q73V97), 
DNLI_MYCS2  (A0QUP1), DNLI_MYCSJ  (A3PXE2), DNLI_MYCSK  (A1UDY9), 
DNLI_MYCSS  (Q1BB26), DNLI_MYCVP  (A1T6P2), DNLI_NITMS  (A9A3K1), 
DNLI_NOCSJ  (A1SKL2), DNLI_OPITP  (B1ZZL9), DNLI_PYRAB  (P0CL75), 
DNLI_PYRAY  (P0CL74), DNLI_PYRFU  (P56709), DNLI_PYRHO  (O59288), 
DNLI_SORC5  (A9GU24), DNLI_STAMF  (A3DP49), DNLI_SULAC  (Q4JAM1), 
DNLI_SULIA  (C3MZR1), DNLI_SULIK  (C4KIZ2), DNLI_SULIL  (C3MJ14), 
DNLI_SULIM  (C3MYD2), DNLI_SULIN  (C3NF77), DNLI_SULIY  (C3N834), 
DNLI_SULSH  (Q9P9K9), DNLI_SULSO  (Q980T8), DNLI_SULTO  (Q976G4), 
DNLI_SULZI  (D2CJS7), DNLI_THEAC  (Q9HJ26), DNLI_THEFM  (Q9HH07), 
DNLI_THEKO  (Q9HHC4), DNLI_THEON  (B6YTR4), DNLI_THEVO  (Q979A1), 
DNLI_VACCA  (O57250), DNLI_VACCC  (P20492), DNLI_VACCW  (P16272), 
DNLI_VAR67  (P33798)
» More

UniProtKB/Swiss-Prot
False negative sequences
54 sequences

DNLI1_METAC (Q8TSR7), DNLI1_METBF (Q46C04), DNLI1_METMA (Q8PVR7), 
DNLI1_THEPD (A1RXA6), DNLI2_HALWD (Q18GX5), DNLI2_METAC (Q8TMT1), 
DNLI2_METBF (Q46BA3), DNLI2_METMA (Q8PTK1), DNLI2_THEPD (A1RY72), 
DNLI3_SCHPO (Q9C1W9), DNLI4_SCHPO (O74833), DNLI_AQUAE  (O67398), 
DNLI_ARTCA  (B8HCE1), DNLI_CALMQ  (A8MDU6), DNLI_CENSY  (A0RWD6), 
DNLI_FOWPN  (Q67480), DNLI_HALLT  (B9LUZ9), DNLI_HALMA  (Q5V4R0), 
DNLI_HALS3  (B0R4C9), DNLI_HALSA  (Q9HR35), DNLI_HALVD  (D4GYZ4), 
DNLI_KINRD  (A6WG40), DNLI_KORVE  (Q1II25), DNLI_METBU  (Q12X08), 
DNLI_METLZ  (A2SR38), DNLI_METPE  (B8GGB8), DNLI_METST  (Q2NHF9), 
DNLI_MYCBO  (Q7TTR7), DNLI_MYCBP  (A1KN60), DNLI_MYCBT  (C1AGI1), 
DNLI_MYCMM  (B2HHE1), DNLI_MYCTA  (A5U776), DNLI_MYCTO  (P9WNV4), 
DNLI_MYCTU  (P9WNV5), DNLI_MYCUA  (A0PTC0), DNLI_NANEQ  (Q74M64), 
DNLI_NATPD  (Q3IPX0), DNLI_NOCFA  (Q5YNY7), DNLI_NPVLD  (Q9YMV2), 
DNLI_PERMH  (C0QSL7), DNLI_PICTO  (Q6L195), DNLI_PYRAE  (O93723), 
DNLI_PYRAR  (A4WH24), DNLI_PYRCJ  (A3MS62), DNLI_PYRIL  (A1RTK4), 
DNLI_PYRNV  (B1YA52), DNLI_RHOJR  (Q0SG75), DNLI_RHOOB  (C1AX87), 
DNLI_SACEN  (A4F870), DNLI_STRAW  (Q826P6), DNLI_STRCO  (Q9FCB1), 
DNLI_STRGG  (B1W5J2), DNLI_UNCMA  (Q0W0X1), LIGD_BACSU  (O34398)
» More

PDB
[Detailed view]
8 PDB

1A0I; 2HIV; 2HIX; 3GDE; 3L2P; 3W1B; 3W1G; 3W5O

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