Entry: PS00354

Forthcoming changes to the profile format
General information about the entry

Entry name [info] HMGI_Y
Accession [info] PS00354
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); OCT-1993 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00306

Name and characterization of the entry

Description [info] HMG-I and HMG-Y DNA-binding domain (A+T-hook).
Pattern [info]
[AT]-x(1,2)-[RK](2)-[GP]-R-G-R-P-[RK]-x.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 38 in 26 different sequences
Number of true positive hits 31 in 19 different sequences
Number of 'unknown' hits
Number of false positive hits 7 in 7 different sequences
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 81.58 %
Recall (true positives / (true positives + false negatives)) 83.78 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 3
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
19 sequences

AFF4_DROER  (B3NAM7), AFF4_DROGR  (B4JQ42), AFF4_DROME  (Q9VQI9), 
AFF4_DROMO  (B4KFE1), AFF4_DROPS  (Q29KG4), AFF4_DROVI  (B4LV24), 
AFF4_DROWI  (B4MUE1), AFF4_DROYA  (B4NXA8), HMGA1_CANFA (Q6URC2), 
HMGA1_CRIGR (Q9QXP3), HMGA1_HUMAN (P17096), HMGA1_MOUSE (P17095), 
HMGA1_RAT   (Q8K585), HMGA2_HUMAN (P52926), KMT2C_HUMAN (Q8NEZ4), 
KMT2C_MOUSE (Q8BRH4), MYNN_DANRE  (Q7ZVR6), PATZ1_HUMAN (Q9HBE1), 
PRH_PETCR   (P48786)
» More

UniProtKB/Swiss-Prot
False negative sequences
6 sequences

AFF4_DROAN  (B3MLB7), CHIF_DROME  (Q9NK54), HMGA1_CHITE (Q23794), 
HMGA2_MOUSE (P52927), LI15B_CAEEL (Q27395), SFC3_SCHPO  (Q9UST7)
» More

UniProtKB/Swiss-Prot
False positive sequences
7 sequences

BRLF1_SHV21 (Q01012), CE087_XENLA (Q5XG50), HQ1_COXBU   (Q45881), 
KMT2A_HUMAN (Q03164), KMT2A_MOUSE (P55200), SLX4_MAGO7  (A4R1T1), 
WHIB7_MYCS2 (A0QTT1)
» More

PDB
[Detailed view]
2 PDB

2EZD; 2EZE

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission