Entry: PS00356

General information about the entry

Entry name [info] HTH_LACI_1
Accession [info] PS00356
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); NOV-1995 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00366

Name and characterization of the entry

Description [info] LacI-type HTH domain signature.
Pattern [info]
[LIVM]-x-[DE]-[LIVM]-A-x(2)-[STAGV]-x-V-[GSTP]-x(2)-[STAG]-[LIVMA]-x(2)-
[LIVMFYAN]-[LIVMC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 180 in 180 different sequences
Number of true positive hits 175 in 175 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 97.22 %
Recall (true positives / (true positives + false negatives)) 95.63 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
175 sequences

ASCG_ECOLI  (P24242    ), CCPA_BACME  (P46828    ), CCPA_BACSU  (P25144    ), 
CCPA_STAAC  (Q5HF38    ), CCPA_STAAM  (P67655    ), CCPA_STAAN  (P99175    ), 
CCPA_STAAR  (Q6GFX2    ), CCPA_STAAS  (Q6G8J1    ), CCPA_STAAW  (Q8NW33    ), 
CCPA_STAEQ  (Q5HNH3    ), CCPA_STAES  (Q8CNV8    ), CCPA_STAXY  (Q56194    ), 
CCPA_STRMU  (O07329    ), CCPB_BACSU  (P37517    ), CRA_ECO57   (P0ACP3    ), 
CRA_ECOL6   (P0ACP2    ), CRA_ECOLI   (P0ACP1    ), CRA_SALTI   (P0A2P9    ), 
CRA_SALTY   (P0A2P8    ), CRA_SHIFL   (P0ACP4    ), CSCR_ECOLX  (P62604    ), 
CSCR_SHIFL  (P62572    ), CYTR_ECO57  (P0ACN9    ), CYTR_ECOL6  (P0ACN8    ), 
CYTR_ECOLI  (P0ACN7    ), CYTR_SHIFL  (P0ACP0    ), DEGA_BACSU  (P37947    ), 
EBGR_ECOLI  (P06846    ), ENDR_PAEPO  (P27871    ), EXUR_BACSU  (Q9JMQ1    ), 
GALR_ECOLI  (P03024    ), GALR_HAEIN  (P31766    ), GALR_LACCA  (O84905    ), 
GALR_SALTS  (E1WAQ4    ), GALR_SALTY  (P0CL11    ), GALR_STRTR  (Q9ZB11    ), 
GALS_ECOLI  (P25748    ), GALS_SALTY  (P41030    ), GLK_BURCA   (Q1BYA7    ), 
GLK_BURL3   (Q39IQ1    ), GLK_BURP1   (Q3JPP0    ), GLK_BURPS   (Q63RQ7    ), 
GLK_BURTA   (Q2SYA5    ), GLK_BURXL   (Q143F8    ), GNTR_ECOL6  (P0ACP6    ), 
GNTR_ECOLI  (P0ACP5    ), IDNR_ECOLI  (P39343    ), IRRE_DEIDV  (C1CZ84    ), 
IRRE_DEIRA  (Q9RXY7    ), KDGR_BACSU  (P50844    ), LACI_ECOLI  (P03023    ), 
LACI_KLEPN  (P06220    ), MALI_ECOLI  (P18811    ), MALI_VIBFU  (P96158    ), 
MALR_CLOBU  (O05103    ), MALR_STAXY  (Q56201    ), MALR_STRCO  (P72396    ), 
MALR_STRPN  (P0A4T1    ), MALR_STRR6  (P0A4T2    ), MSMR_BACSU  (O34829    ), 
NFXB_PSEAE  (P32265    ), PEPR_LACDL  (Q48544    ), PURR_ACTP2  (A3N0H9    ), 
PURR_ACTP7  (B3H1F6    ), PURR_ACTPJ  (B0BP99    ), PURR_ACTSZ  (A6VNL0    ), 
PURR_ALISL  (B6EH86    ), PURR_CROS8  (A7MFD3    ), PURR_ECO24  (A7ZMC4    ), 
PURR_ECO27  (B7URZ9    ), PURR_ECO45  (B7MA12    ), PURR_ECO55  (B7L5L1    ), 
PURR_ECO57  (P0ACP8    ), PURR_ECO5E  (B5Z492    ), PURR_ECO7I  (B7NTX5    ), 
PURR_ECO81  (B7MVD4    ), PURR_ECO8A  (B7M0L5    ), PURR_ECOBW  (C4ZYC2    ), 
PURR_ECOHS  (A8A0K5    ), PURR_ECOK1  (A1ABJ9    ), PURR_ECOL5  (Q0THG9    ), 
PURR_ECOL6  (Q8FH72    ), PURR_ECOLC  (B1IQ96    ), PURR_ECOLI  (P0ACP7    ), 
PURR_ECOLU  (B7NBB1    ), PURR_ECOSE  (B6IB98    ), PURR_ECOSM  (B1LEM6    ), 
PURR_ECOUT  (Q1RBD7    ), PURR_EDWI9  (C5BE45    ), PURR_ERWT9  (B2VEM5    ), 
PURR_ESCF3  (B7LQA9    ), PURR_HAEDU  (Q7VL44    ), PURR_HAEI8  (Q4QL70    ), 
PURR_HAEIE  (A5UCM9    ), PURR_HAEIG  (A5UIZ0    ), PURR_HAEIN  (P46456    ), 
PURR_HAEPS  (B8F4D0    ), PURR_HAES1  (Q0I4B4    ), PURR_HISS2  (B0UUN7    ), 
PURR_KLEP3  (B5XWL8    ), PURR_KLEP7  (A6TA06    ), PURR_MANSM  (Q65TP0    ), 
PURR_PASMU  (Q9CN88    ), PURR_PECAS  (Q6D5W3    ), PURR_PECCP  (C6DK36    ), 
PURR_PHOLL  (Q7N3V8    ), PURR_PHOPR  (Q6LQB9    ), PURR_PROMH  (B4EWM9    ), 
PURR_SALA4  (B5F6L7    ), PURR_SALAR  (A9MEJ1    ), PURR_SALCH  (Q57PK6    ), 
PURR_SALDC  (B5FIH3    ), PURR_SALEP  (B5QV29    ), PURR_SALG2  (B5RAM9    ), 
PURR_SALHS  (B4TH70    ), PURR_SALNS  (B4T567    ), PURR_SALPA  (Q5PH15    ), 
PURR_SALPB  (A9N0Y2    ), PURR_SALPC  (C0Q5V2    ), PURR_SALPK  (B5BKD9    ), 
PURR_SALSV  (B4TUY8    ), PURR_SALTI  (Q8Z6P1    ), PURR_SALTY  (O68446    ), 
PURR_SERP5  (A8GDV6    ), PURR_SHIB3  (B2U2G3    ), PURR_SHIBS  (Q321B7    ), 
PURR_SHIDS  (Q32FB3    ), PURR_SHIF8  (Q0T4B4    ), PURR_SHIFL  (P0ACP9    ), 
PURR_SHISS  (Q3Z213    ), PURR_VIBC3  (A5F7H0    ), PURR_VIBCB  (A7N1L2    ), 
PURR_VIBCH  (Q9KRC1    ), PURR_VIBCM  (C3LN44    ), PURR_VIBF1  (Q5E4H9    ), 
PURR_VIBFM  (B5FF00    ), PURR_VIBPA  (Q87QW9    ), PURR_VIBTL  (B7VMG4    ), 
PURR_VIBVU  (Q8DAQ5    ), PURR_VIBVY  (Q7MJ57    ), PURR_YERE8  (A1JP52    ), 
PURR_YERP3  (A7FHK2    ), PURR_YERPA  (Q1C774    ), PURR_YERPB  (B2K5I4    ), 
PURR_YERPE  (Q7CIS2    ), PURR_YERPG  (A9QZB3    ), PURR_YERPN  (Q1CIL0    ), 
PURR_YERPP  (A4TIQ4    ), PURR_YERPS  (Q66A32    ), PURR_YERPY  (B1JJ59    ), 
RBSR_BACHD  (Q9K6K2    ), RBSR_BACSU  (P36944    ), RBSR_ECO57  (P0ACQ2    ), 
RBSR_ECOL6  (P0ACQ1    ), RBSR_ECOLI  (P0ACQ0    ), RBSR_HAEIN  (P44329    ), 
RBSR_PASMU  (Q9CPA2    ), RBSR_SHIFL  (P0ACQ3    ), RBTR_ENTAE  (P07760    ), 
REG1_STRLI  (P72469    ), REGA_CLOAB  (P58258    ), REGA_CLOSA  (Q45831    ), 
SACR_LACLL  (Q04939    ), SCRR_KLEPN  (P37076    ), SCRR_PEDPE  (P43472    ), 
SCRR_SALTM  (P37077    ), SCRR_STAXY  (P74892    ), SCRR_STRMU  (Q54430    ), 
SCRR_VIBAL  (P24508    ), TRER_ECOLI  (P36673    ), TRER_SALTY  (P36674    ), 
YAML_STRLM  (P23823    ), YCJW_ECOLI  (P77615    ), YKVZ_BACSU  (O31690    ), 
YVDE_BACSU  (O06987    )
» more

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

AGLR_RHIME  (Q9Z3R4    ), CELR_THEFU  (O87590    ), GANR_BACSU  (O07008    ), 
LACR_LACHE  (Q7WTB0    ), NTDR_BACSU  (O07567    ), RAFR_ECOLX  (P21867    ), 
RBSR_LACLA  (Q9CF41    ), Y4158_STRCO (Q05954    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

LACI_RHIRD  (Q01936    ), OPNR_AGRRH  (P27872    ), YAML_STRVL  (P23822    )

		
UniProtKB/Swiss-Prot
False positive sequences
5 sequences

MDH_BACTN   (Q8A0W0    ), RPOB_GRAFK  (A0M3Y9    ), S29A3_BOVIN (A1A4N1    ), 
Y1018_STRA3 (P67251    ), Y983_STRA5  (P67252    )
» more

PDB
[Detailed view]
52 PDB

1BDH; 1BDI; 1CJG; 1EFA; 1JFS; 1JFT; 1JH9; 1JWL; 1L1M; 1LBG; 1LCC; 1LCD; 1LQC; 1OSL; 1PNR; 1PRU; 1PRV; 1QP0; 1QP4; 1QP7; 1QPZ; 1QQA; 1QQB; 1RZR; 1UXC; 1UXD; 1VPW; 1WET; 1ZAY; 1ZVV; 2BJC; 2HSG; 2JCG; 2KEI; 2KEJ; 2KEK; 2LCV; 2PE5; 2PUA; 2PUB; 2PUC; 2PUD; 2PUE; 2PUF; 2PUG; 3DTE; 3DTI; 3DTK; 3OQM; 3OQN; 3OQO; 4RZS
» more

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