Entry: PS00356

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General information about the entry

Entry name [info] HTH_LACI_1
Accession [info] PS00356
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); NOV-1995 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00366

Name and characterization of the entry

Description [info] LacI-type HTH domain signature.
Pattern [info]
[LIVM]-x-[DE]-[LIVM]-A-x(2)-[STAGV]-x-V-[GSTP]-x(2)-[STAG]-[LIVMA]-x(2)-
[LIVMFYAN]-[LIVMC].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 178 in 178 different sequences
Number of true positive hits 173 in 173 different sequences
Number of 'unknown' hits
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 97.19 %
Recall (true positives / (true positives + false negatives)) 95.58 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
173 sequences

ASCG_ECOLI  (P24242), CCPA_BACME  (P46828), CCPA_BACSU  (P25144), 
CCPA_STAAC  (Q5HF38), CCPA_STAAM  (P67655), CCPA_STAAN  (P99175), 
CCPA_STAAR  (Q6GFX2), CCPA_STAAS  (Q6G8J1), CCPA_STAAW  (Q8NW33), 
CCPA_STAEQ  (Q5HNH3), CCPA_STAES  (Q8CNV8), CCPA_STAXY  (Q56194), 
CCPA_STRMU  (O07329), CCPB_BACSU  (P37517), CRA_ECO57   (P0ACP3), 
CRA_ECOL6   (P0ACP2), CRA_ECOLI   (P0ACP1), CRA_SALTI   (P0A2P9), 
CRA_SALTY   (P0A2P8), CRA_SHIFL   (P0ACP4), CSCR_ECOLX  (P62604), 
CSCR_SHIFL  (P62572), CYTR_ECO57  (P0ACN9), CYTR_ECOL6  (P0ACN8), 
CYTR_ECOLI  (P0ACN7), CYTR_SHIFL  (P0ACP0), DEGA_BACSU  (P37947), 
EBGR_ECOLI  (P06846), ENDR_PAEPO  (P27871), EXUR_BACSU  (Q9JMQ1), 
GALR_ECOLI  (P03024), GALR_HAEIN  (P31766), GALR_LACCA  (O84905), 
GALR_SALTS  (E1WAQ4), GALR_SALTY  (P0CL11), GALR_STRTR  (Q9ZB11), 
GALS_ECOLI  (P25748), GALS_SALTY  (P41030), GLK_BURCA   (Q1BYA7), 
GLK_BURP1   (Q3JPP0), GLK_BURPS   (Q63RQ7), GLK_BURS3   (Q39IQ1), 
GLK_BURTA   (Q2SYA5), GLK_BURXL   (Q143F8), GNTR_ECOL6  (P0ACP6), 
GNTR_ECOLI  (P0ACP5), IDNR_ECOLI  (P39343), KDGR_BACSU  (P50844), 
LACI_ECOLI  (P03023), LACI_KLEPN  (P06220), MALI_ECOLI  (P18811), 
MALI_VIBFU  (P96158), MALR_CLOBU  (O05103), MALR_STAXY  (Q56201), 
MALR_STRCO  (P72396), MALR_STRPN  (P0A4T1), MALR_STRR6  (P0A4T2), 
MSMR_BACSU  (O34829), NFXB_PSEAE  (P32265), PEPR_LACDL  (Q48544), 
PURR_ACTP2  (A3N0H9), PURR_ACTP7  (B3H1F6), PURR_ACTPJ  (B0BP99), 
PURR_ACTSZ  (A6VNL0), PURR_ALISL  (B6EH86), PURR_CROS8  (A7MFD3), 
PURR_ECO24  (A7ZMC4), PURR_ECO27  (B7URZ9), PURR_ECO45  (B7MA12), 
PURR_ECO55  (B7L5L1), PURR_ECO57  (P0ACP8), PURR_ECO5E  (B5Z492), 
PURR_ECO7I  (B7NTX5), PURR_ECO81  (B7MVD4), PURR_ECO8A  (B7M0L5), 
PURR_ECOBW  (C4ZYC2), PURR_ECOHS  (A8A0K5), PURR_ECOK1  (A1ABJ9), 
PURR_ECOL5  (Q0THG9), PURR_ECOL6  (Q8FH72), PURR_ECOLC  (B1IQ96), 
PURR_ECOLI  (P0ACP7), PURR_ECOLU  (B7NBB1), PURR_ECOSE  (B6IB98), 
PURR_ECOSM  (B1LEM6), PURR_ECOUT  (Q1RBD7), PURR_EDWI9  (C5BE45), 
PURR_ERWT9  (B2VEM5), PURR_ESCF3  (B7LQA9), PURR_HAEDU  (Q7VL44), 
PURR_HAEI8  (Q4QL70), PURR_HAEIE  (A5UCM9), PURR_HAEIG  (A5UIZ0), 
PURR_HAEIN  (P46456), PURR_HAEPS  (B8F4D0), PURR_HISS1  (Q0I4B4), 
PURR_HISS2  (B0UUN7), PURR_KLEP3  (B5XWL8), PURR_KLEP7  (A6TA06), 
PURR_MANSM  (Q65TP0), PURR_PASMU  (Q9CN88), PURR_PECAS  (Q6D5W3), 
PURR_PECCP  (C6DK36), PURR_PHOLL  (Q7N3V8), PURR_PHOPR  (Q6LQB9), 
PURR_PROMH  (B4EWM9), PURR_SALA4  (B5F6L7), PURR_SALAR  (A9MEJ1), 
PURR_SALCH  (Q57PK6), PURR_SALDC  (B5FIH3), PURR_SALEP  (B5QV29), 
PURR_SALG2  (B5RAM9), PURR_SALHS  (B4TH70), PURR_SALNS  (B4T567), 
PURR_SALPA  (Q5PH15), PURR_SALPB  (A9N0Y2), PURR_SALPC  (C0Q5V2), 
PURR_SALPK  (B5BKD9), PURR_SALSV  (B4TUY8), PURR_SALTI  (Q8Z6P1), 
PURR_SALTY  (O68446), PURR_SERP5  (A8GDV6), PURR_SHIB3  (B2U2G3), 
PURR_SHIBS  (Q321B7), PURR_SHIDS  (Q32FB3), PURR_SHIF8  (Q0T4B4), 
PURR_SHIFL  (P0ACP9), PURR_SHISS  (Q3Z213), PURR_VIBC3  (A5F7H0), 
PURR_VIBCB  (A7N1L2), PURR_VIBCH  (Q9KRC1), PURR_VIBCM  (C3LN44), 
PURR_VIBF1  (Q5E4H9), PURR_VIBFM  (B5FF00), PURR_VIBPA  (Q87QW9), 
PURR_VIBSL  (B7VMG4), PURR_VIBVU  (Q8DAQ5), PURR_VIBVY  (Q7MJ57), 
PURR_YERE8  (A1JP52), PURR_YERP3  (A7FHK2), PURR_YERPA  (Q1C774), 
PURR_YERPB  (B2K5I4), PURR_YERPE  (Q7CIS2), PURR_YERPG  (A9QZB3), 
PURR_YERPN  (Q1CIL0), PURR_YERPP  (A4TIQ4), PURR_YERPS  (Q66A32), 
PURR_YERPY  (B1JJ59), RBSR_BACHD  (Q9K6K2), RBSR_BACSU  (P36944), 
RBSR_ECO57  (P0ACQ2), RBSR_ECOL6  (P0ACQ1), RBSR_ECOLI  (P0ACQ0), 
RBSR_HAEIN  (P44329), RBSR_PASMU  (Q9CPA2), RBSR_SHIFL  (P0ACQ3), 
RBTR_ENTAE  (P07760), REG1_STRLI  (P72469), REGA_CLOAB  (P58258), 
REGA_CLOSA  (Q45831), SACR_LACLL  (Q04939), SCRR_KLEPN  (P37076), 
SCRR_PEDPE  (P43472), SCRR_SALTM  (P37077), SCRR_STAXY  (P74892), 
SCRR_STRMU  (Q54430), SCRR_VIBAL  (P24508), TRER_ECOLI  (P36673), 
TRER_SALTY  (P36674), YAML_STRLM  (P23823), YCJW_ECOLI  (P77615), 
YKVZ_BACSU  (O31690), YVDE_BACSU  (O06987)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

AGLR_RHIME  (Q9Z3R4), CELR_THEFU  (O87590), GANR_BACSU  (O07008), 
LACR_LACHE  (Q7WTB0), NTDR_BACSU  (O07567), RAFR_ECOLX  (P21867), 
RBSR_LACLA  (Q9CF41), Y4158_STRCO (Q05954)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

LACI_RHIRD  (Q01936), OPNR_AGRRH  (P27872), YAML_STRVL  (P23822)

		
UniProtKB/Swiss-Prot
False positive sequences
5 sequences

MDH_BACTN   (Q8A0W0), RPOB_GRAFK  (A0M3Y9), S29A3_BOVIN (A1A4N1), 
Y1018_STRA3 (P67251), Y983_STRA5  (P67252)
» More

PDB
[Detailed view]
48 PDB

1BDH; 1BDI; 1CJG; 1EFA; 1JFS; 1JFT; 1JH9; 1JWL; 1L1M; 1LBG; 1LCC; 1LCD; 1LQC; 1OSL; 1PNR; 1PRU; 1PRV; 1QP0; 1QP4; 1QP7; 1QPZ; 1QQA; 1QQB; 1RZR; 1UXC; 1UXD; 1VPW; 1WET; 1ZAY; 1ZVV; 2BJC; 2HSG; 2JCG; 2KEI; 2KEJ; 2KEK; 2LCV; 2PE5; 2PUA; 2PUB; 2PUC; 2PUD; 2PUE; 2PUF; 2PUG; 3OQM; 3OQN; 3OQO
» More

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