Entry: PS00364

General information about the entry
Entry name BACTERIAL_PQQ_2
Accession number PS00364
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00375
Name and characterization of the entry
DescriptionBacterial quinoprotein dehydrogenases signature 2.
Pattern W-x(4)-[YF]-D-x(3)-[DN]-[LIVMFYT]-[LIVMFY](3)-x(2)-G-x(2)-[STAG]-[PVT].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 19 hits in 19 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 19 hits in 19 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 86.36 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DHET_ACEAC  (P18278), DHET_ACEEU  (Q44002), DHET_ACEPO  (P28036), 
DHET_GLUOX  (O05542), DHGA_ACICA  (P05465), DHG_ECOLI   (P15877), 
DHG_GLUOX   (P27175), DHM1_METEA  (P16027), DHM1_METME  (P38539), 
DHM1_METOR  (P15279), DHM1_PARDE  (P12293), EXAA_PSEAE  (Q9Z4J7), 
QEDH_PSEPU  (A8R3S4), QGDA_PSEPU  (Q4W6G0), QHED_COMTE  (Q46444), 
QHED_PSEPU  (Q8GR64), QUIA_ACIAD  (Q59086), QUIA_XANCJ  (Q9XD78), 
XOXF_PARDE  (P29968)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PVADH_PSESP (P77931), SLDA_GLUOX  (Q70JN9), SLDA_GLUTH  (Q8KIL1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1FLG; 1G72; 1H4I; 1H4J; 1KB0; 1KV9; 1LRW; 1W6S; 2AD6; 2AD7; 2AD8; 4AAH;

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