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Entry: PS00392
General information about the entry
Entry nameDDC_GAD_HDC_YDC
Accession numberPS00392
Entry typePATTERN
DateNOV-1990 (CREATED); APR-2006 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00329
Name and characterization of the entry
DescriptionDDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
PatternS-[LIVMFYW]-x-{KG}-x(3)-K-[LIVMFYWGH]-[LIVMFYWG]-x-{R}-x-[LIVMFYW]-{V}- [CA]-x(2)-[LIVMFYWQ]-{K}-x-[RK].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 100 hits in 100 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 91 hits in 91 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 9 hits in 9 different sequences
  • Number of known missed hits: 45
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 91.00 %
  • Recall (true hits / (true hits + false negatives)): 66.91 %
Comments
  • Taxonomic range: Archaebacteria, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 6,pyridoxal_phosphate
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
CSAD_MOUSE  (Q9DBE0), CSAD_RAT    (Q64611), DCE1_BOVIN  (Q0VCA1), 
DCE1_CANFA  (A0PA85), DCE1_FELCA  (P14748), DCE1_HUMAN  (Q99259), 
DCE1_MOUSE  (P48318), DCE1_PANTR  (Q5IS68), DCE1_PIG    (P48319), 
DCE1_PONAB  (Q5R7S7), DCE1_RAT    (P18088), DCE2_CANFA  (Q4PRC2), 
DCE2_HUMAN  (Q05329), DCE2_MOUSE  (P48320), DCE2_PIG    (P48321), 
DCE2_RAT    (Q05683), DCEA_ECO57  (P58228), DCEA_ECOL6  (P69909), 
DCEA_ECOLI  (P69908), DCEA_SHIFL  (Q83PR1), DCEB_ECO57  (P69911), 
DCEB_ECOL6  (Q8FHG5), DCEB_ECOLI  (P69910), DCEB_SHIFL  (P69912), 
DCE_DROME   (P20228), DCHS_ACIB3  (B7GZJ8), DCHS_ACIB5  (B7I459), 
DCHS_ACIBC  (B2HVG6), DCHS_ACIBT  (A3M7A4), DCHS_ACIBY  (B0VBU8), 
DCHS_BOVIN  (Q5EA83), DCHS_DROME  (Q05733), DCHS_ENTAE  (P28577), 
DCHS_HUMAN  (P19113), DCHS_KLEOR  (Q8L0Z4), DCHS_MORMO  (P05034), 
DCHS_MOUSE  (P23738), DCHS_PSEE4  (Q1IAK7), DCHS_PSEFL  (P95477), 
DCHS_RAOPL  (P28578), DCHS_RAT    (P16453), DCHS_SOLLC  (P54772), 
DCHS_VIBAN  (Q56581), DCHS_VIBHB  (A7MVI6), DDC_ACIBA   (Q43908), 
DDC_BOVIN   (P27718), DDC_CATRO   (P17770), DDC_CAVPO   (P22781), 
DDC_DROLE   (O96571), DDC_DROME   (P05031), DDC_DROSI   (O96567), 
DDC_HAEIN   (P71362), DDC_HUMAN   (P20711), DDC_MANSE   (P48861), 
DDC_MOUSE   (O88533), DDC_PIG     (P80041), DDC_RAT     (P14173), 
GADL1_BOVIN (A6QM00), GADL1_HUMAN (Q6ZQY3), GADL1_MOUSE (Q80WP8), 
GADL1_XENTR (Q28D99), L2AM_DROLE  (O96569), L2AM_DROME  (P18486), 
L2AM_DROSI  (P81893), MFNA_ARCFU  (O28275), MFNA_META3  (A6UVR4), 
MFNA_METLZ  (A2STQ3), MFNA_METM5  (A4G060), MFNA_METM7  (A6VIC0), 
MFNA_METMJ  (A3CWM4), MFNA_METMP  (Q6M0Y7), MFNA_METPE  (B8GDM7), 
MFNA_METS3  (A5ULW4), MFNA_METTP  (A0B9M9), MFNA_METVS  (A6URB4), 
MFNA_PYRAB  (Q9UZD5), MFNA_PYRFU  (Q8U1P6), MFNA_PYRHO  (O58679), 
MFNA_PYRKO  (Q5JJ82), MFNA_THEGJ  (C5A2X8), RHBB_RHIME  (Q9Z3R1), 
TYDC1_ARATH (Q8RY79), TYDC1_ORYSJ (Q7XHL3), TYDC1_PAPSO (P54768), 
TYDC1_PETCR (Q06085), TYDC2_PAPSO (P54769), TYDC2_PETCR (Q06086), 
TYDC3_PAPSO (P54770), TYDC3_PETCR (Q06087), TYDC4_PETCR (Q06088), 
TYDC5_PAPSO (P54771)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CSAD_HUMAN  (Q9Y600), DCE1_ARATH  (Q42521), DCE2_ARATH  (Q42472), 
DCEA_LISMO  (Q9F5P3), DCEB_LISIN  (Q928R9), DCEB_LISMO  (Q9EYW9), 
DCEC_LISIN  (Q928K4), DCEC_LISMO  (Q8Y4K4), DCE_LACLA   (Q9CG20), 
DCE_LACLM   (O30418), DCE_PETHY   (Q07346), DCE_SOLLC   (P54767), 
DCE_YEAST   (Q04792), DCHS_RHILO  (Q98A07), DDC_CAEEL   (P34751), 
GADA_DICDI  (Q54VQ5), GADB_DICDI  (Q54IJ3), MFNA_HALMA  (Q5V1B4), 
MFNA_HALS3  (B0R349), MFNA_HALSA  (Q9HSA3), MFNA_METAC  (Q8TUQ9), 
MFNA_METB6  (A7IAB9), MFNA_METBF  (Q46DU3), MFNA_METBU  (Q12VA2), 
MFNA_METHJ  (Q2FSD2), MFNA_METJA  (Q60358), MFNA_METKA  (Q8TV92), 
MFNA_METMA  (Q8PXA5), MFNA_METST  (Q2NHY7), MFNA_METTH  (O27188), 
MFNA_NATPD  (Q3IT46), MFNA_UNCMA  (Q0W498), PDXD1_HUMAN (Q6P996), 
PDXD1_MOUSE (Q99K01), PDXD1_XENLA (Q6DF78), PDXD2_HUMAN (Q6P474), 
SGPL1_HUMAN (O95470), SGPL1_MOUSE (Q8R0X7), SGPL1_PONAB (Q5R4G0), 
SGPL1_RAT   (Q8CHN6), SGPL_ARATH  (Q9C509), SGPL_CAEEL  (Q9Y194), 
SGPL_DROME  (Q9V7Y2), SGPL_YEAST  (Q05567), TYDC2_ARATH (Q9M0G4)
False positive hits (sequences which do not belong to the set under consideration):
CCME_EHRCJ  (Q3YSH2), CCME_EHRCR  (Q2GG46), CCME_EHRRG  (Q5FHG0), 
CCME_EHRRW  (Q5HBM4), CH101_VIBCH (Q9KNR6), HS7C4_DICDI (Q54BD8), 
MMS1_YEAST  (Q06211), NUOD_SPHAL  (Q1GTK0), RMT2_YARLI  (Q6CBX2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1JS3; 1JS6; 1PMM; 1PMO; 1XEY; 2DGK; 2DGL; 2DGM; 3FZ6; 3FZ7; 3FZ8; 3RBF; 3RBL; 3RCH;

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