Entry: PS00392

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General information about the entry

Entry name [info] DDC_GAD_HDC_YDC
Accession [info] PS00392
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00329

Name and characterization of the entry

Description [info] DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
Pattern [info]
S-[LIVMFYW]-x-{KG}-x(3)-K-[LIVMFYWGH]-[LIVMFYWG]-x-{R}-x-[LIVMFYW]-{V}-
[CA]-x(2)-[LIVMFYWQ]-{K}-x-[RK].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 104 in 104 different sequences
Number of true positive hits 95 in 95 different sequences
Number of 'unknown' hits
Number of false positive hits 9 in 9 different sequences
Number of false negative sequences 45
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 91.35 %
Recall (true positives / (true positives + false negatives)) 67.86 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] pyridoxal_phosphate at position 6
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
95 sequences

CSAD_MOUSE  (Q9DBE0), CSAD_RAT    (Q64611), DCE1_BOVIN  (Q0VCA1), 
DCE1_CANFA  (A0PA85), DCE1_FELCA  (P14748), DCE1_HUMAN  (Q99259), 
DCE1_MOUSE  (P48318), DCE1_PANTR  (Q5IS68), DCE1_PIG    (P48319), 
DCE1_PONAB  (Q5R7S7), DCE1_RAT    (P18088), DCE2_CANFA  (Q4PRC2), 
DCE2_HUMAN  (Q05329), DCE2_MOUSE  (P48320), DCE2_PIG    (P48321), 
DCE2_RAT    (Q05683), DCEA_ECO57  (P58228), DCEA_ECOL6  (P69909), 
DCEA_ECOLI  (P69908), DCEA_SHIFL  (Q83PR1), DCEB_ECO57  (P69911), 
DCEB_ECOL6  (Q8FHG5), DCEB_ECOLI  (P69910), DCEB_SHIFL  (P69912), 
DCE_DROME   (P20228), DCHS_ACIB3  (B7GZJ8), DCHS_ACIB5  (B7I459), 
DCHS_ACIBC  (B2HVG6), DCHS_ACIBT  (A3M7A4), DCHS_ACIBY  (B0VBU8), 
DCHS_BOVIN  (Q5EA83), DCHS_DROME  (Q05733), DCHS_ENTAE  (P28577), 
DCHS_HUMAN  (P19113), DCHS_MORMO  (P05034), DCHS_MOUSE  (P23738), 
DCHS_PSEE4  (Q1IAK7), DCHS_PSEFL  (P95477), DCHS_RAOOR  (Q8L0Z4), 
DCHS_RAOPL  (P28578), DCHS_RAT    (P16453), DCHS_SOLLC  (P54772), 
DCHS_VIBA7  (Q56581), DCHS_VIBCB  (A7MVI6), DDC_ACIBA   (Q43908), 
DDC_BOVIN   (P27718), DDC_CATRO   (P17770), DDC_CAVPO   (P22781), 
DDC_DROLE   (O96571), DDC_DROME   (P05031), DDC_DROSI   (O96567), 
DDC_HAEIN   (P71362), DDC_HUMAN   (P20711), DDC_MANSE   (P48861), 
DDC_MOUSE   (O88533), DDC_PIG     (P80041), DDC_RAT     (P14173), 
GADL1_BOVIN (A6QM00), GADL1_HUMAN (Q6ZQY3), GADL1_MOUSE (Q80WP8), 
GADL1_XENTR (Q28D99), L2AM_DROLE  (O96569), L2AM_DROME  (P18486), 
L2AM_DROSI  (P81893), MFNA_ARCFU  (O28275), MFNA_META3  (A6UVR4), 
MFNA_METLZ  (A2STQ3), MFNA_METM5  (A4G060), MFNA_METM7  (A6VIC0), 
MFNA_METMJ  (A3CWM4), MFNA_METMP  (Q6M0Y7), MFNA_METPE  (B8GDM7), 
MFNA_METS3  (A5ULW4), MFNA_METTP  (A0B9M9), MFNA_METVS  (A6URB4), 
MFNA_PYRAB  (Q9UZD5), MFNA_PYRFU  (Q8U1P6), MFNA_PYRHO  (O58679), 
MFNA_THEGJ  (C5A2X8), MFNA_THEKO  (Q5JJ82), RHBB_RHIME  (Q9Z3R1), 
SDC1_ARATH  (Q9MA74), SDC1_ORYSJ  (Q6ESZ9), SDC2_ORYSJ  (Q8RV06), 
SDC3_ORYSJ  (Q7X8D4), TYDC1_ARATH (Q8RY79), TYDC1_ORYSJ (Q7XHL3), 
TYDC1_PAPSO (P54768), TYDC1_PETCR (Q06085), TYDC2_PAPSO (P54769), 
TYDC2_PETCR (Q06086), TYDC3_PAPSO (P54770), TYDC3_PETCR (Q06087), 
TYDC4_PETCR (Q06088), TYDC5_PAPSO (P54771)
» More

UniProtKB/Swiss-Prot
False negative sequences
45 sequences

CSAD_HUMAN  (Q9Y600), DCE1_ARATH  (Q42521), DCE2_ARATH  (Q42472), 
DCEA_LISMO  (Q9F5P3), DCEB_LISIN  (Q928R9), DCEB_LISMO  (Q9EYW9), 
DCEC_LISIN  (Q928K4), DCEC_LISMO  (Q8Y4K4), DCE_LACLA   (Q9CG20), 
DCE_LACLM   (O30418), DCE_PETHY   (Q07346), DCE_SOLLC   (P54767), 
DCE_YEAST   (Q04792), DCHS_RHILO  (Q98A07), DDC_CAEEL   (P34751), 
GADA_DICDI  (Q54VQ5), GADB_DICDI  (Q54IJ3), MFNA_HALMA  (Q5V1B4), 
MFNA_HALS3  (B0R349), MFNA_HALSA  (Q9HSA3), MFNA_METAC  (Q8TUQ9), 
MFNA_METB6  (A7IAB9), MFNA_METBF  (Q46DU3), MFNA_METBU  (Q12VA2), 
MFNA_METHJ  (Q2FSD2), MFNA_METJA  (Q60358), MFNA_METKA  (Q8TV92), 
MFNA_METMA  (Q8PXA5), MFNA_METST  (Q2NHY7), MFNA_METTH  (O27188), 
MFNA_NATPD  (Q3IT46), MFNA_UNCMA  (Q0W498), PDXD1_HUMAN (Q6P996), 
PDXD1_MOUSE (Q99K01), PDXD1_XENLA (Q6DF78), PDXD2_HUMAN (Q6P474), 
SGPL1_HUMAN (O95470), SGPL1_MOUSE (Q8R0X7), SGPL1_PONAB (Q5R4G0), 
SGPL1_RAT   (Q8CHN6), SGPL_ARATH  (Q9C509), SGPL_CAEEL  (Q9Y194), 
SGPL_DROME  (Q9V7Y2), SGPL_YEAST  (Q05567), TYDC2_ARATH (Q9M0G4)
» More

UniProtKB/Swiss-Prot
False positive sequences
9 sequences

CCME_EHRCJ  (Q3YSH2), CCME_EHRCR  (Q2GG46), CCME_EHRRG  (Q5FHG0), 
CCME_EHRRW  (Q5HBM4), CH101_VIBCH (Q9KNR6), HS7C4_DICDI (Q54BD8), 
MMS1_YEAST  (Q06211), NUOD_SPHAL  (Q1GTK0), RMT2_YARLI  (Q6CBX2)
» More

PDB
[Detailed view]
15 PDB

1JS3; 1JS6; 1PMM; 1PMO; 1XEY; 2DGK; 2DGL; 2DGM; 3FZ6; 3FZ7; 3FZ8; 3RBF; 3RBL; 3RCH; 4E1O
» More

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