Entry: PS00394

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General information about the entry

Entry name [info] DNA_PHOTOLYASES_1_1
Accession [info] PS00394
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); NOV-1997 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00331

Name and characterization of the entry

Description [info] DNA photolyases class 1 signature 1.
Pattern [info]
T-G-x-P-[LIVM](2)-D-A-x-M-[RA]-x-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 25 in 25 different sequences
Number of true positive hits 25 in 25 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 25
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 50.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
25 sequences

CRY1_AEDAE  (Q17DK5), CRY1_ANOGA  (Q7PYI7), CRY1_ARATH  (Q43125), 
CRY1_CULQU  (B0WRR9), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 
CRY2_VIBCH  (Q9KS67), CRYD_GLOVI  (Q7NMD1), CRYD_OSTTA  (Q5IFN2), 
CRYD_RHOBA  (Q7UJB1), CRYD_SYNY3  (P77967), PHR_BACPE   (Q04449), 
PHR_BUCAI   (P57386), PHR_BUCBP   (Q89AJ9), PHR_ECOLI   (P00914), 
PHR_HALSA   (Q9HQ46), PHR_NEUCR   (P27526), PHR_SALTY   (P25078), 
PHR_STRGR   (P12768), PHR_SYNP6   (P05327), PHR_SYNY3   (Q55081), 
PHR_THET2   (P61496), PHR_THET8   (P61497), PHR_VIBCH   (Q9KNA8), 
PHR_YEAST   (P05066)
» More

UniProtKB/Swiss-Prot
False negative sequences
25 sequences

CRY1_CHICK  (Q8QG61), CRY1_DROME  (O77059), CRY1_DROPS  (Q293P8), 
CRY1_ERIRU  (Q5IZC5), CRY1_HUMAN  (Q16526), CRY1_MACFA  (Q8WP19), 
CRY1_MOUSE  (P97784), CRY1_RAT    (Q32Q86), CRY1_SPAJD  (Q70AD6), 
CRY1_SYLBO  (Q6ZZY0), CRY2_CHICK  (Q8QG60), CRY2_HUMAN  (Q49AN0), 
CRY2_MOUSE  (Q9R194), CRY2_RAT    (Q923I8), CRYD_DANRE  (Q4KML2), 
CRYD_IDILO  (Q5QXE0), CRYD_NATPD  (Q3IPX9), CRYD_NEUCR  (Q7SI68), 
CRYD_ORYSJ  (Q651U1), CRYD_SOLLC  (Q38JU2), CRYD_VIBCH  (Q9KR33), 
CRYD_VIBPA  (Q87JP5), CRYD_XENLA  (Q75WS4), UVR3_ARATH  (O48652), 
UVR3_ORYSJ  (Q0E2Y1)
» More

PDB
[Detailed view]
16 PDB

1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09
» More

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