Entry: PS00394

General information about the entry

Entry name [info] DNA_PHOTOLYASES_1_1
Accession [info] PS00394
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); NOV-1997 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00331

Name and characterization of the entry

Description [info] DNA photolyases class 1 signature 1.
Pattern [info]
T-G-x-P-[LIVM](2)-D-A-x-M-[RA]-x-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 26 in 26 different sequences
Number of true positive hits 26 in 26 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 25
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 50.98 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
26 sequences

CRY1_AEDAE  (Q17DK5), CRY1_ANOGA  (Q7PYI7), CRY1_ARATH  (Q43125), 
CRY1_CULQU  (B0WRR9), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 
CRY2_VIBCH  (Q9KS67), CRYD_GLOVI  (Q7NMD1), CRYD_OSTTA  (Q5IFN2), 
CRYD_RHOBA  (Q7UJB1), CRYD_SYNY3  (P77967), PHRA_AGRFC  (A9CJC9), 
PHR_BACPE   (Q04449), PHR_BUCAI   (P57386), PHR_BUCBP   (Q89AJ9), 
PHR_ECOLI   (P00914), PHR_HALSA   (Q9HQ46), PHR_NEUCR   (P27526), 
PHR_SALTY   (P25078), PHR_STRGR   (P12768), PHR_SYNP6   (P05327), 
PHR_SYNY3   (Q55081), PHR_THET2   (P61496), PHR_THET8   (P61497), 
PHR_VIBCH   (Q9KNA8), PHR_YEAST   (P05066)
» More

UniProtKB/Swiss-Prot
False negative sequences
25 sequences

CRY1_CHICK  (Q8QG61), CRY1_DROME  (O77059), CRY1_DROPS  (Q293P8), 
CRY1_ERIRU  (Q5IZC5), CRY1_HUMAN  (Q16526), CRY1_MACFA  (Q8WP19), 
CRY1_MOUSE  (P97784), CRY1_RAT    (Q32Q86), CRY1_SPAJD  (Q70AD6), 
CRY1_SYLBO  (Q6ZZY0), CRY2_CHICK  (Q8QG60), CRY2_HUMAN  (Q49AN0), 
CRY2_MOUSE  (Q9R194), CRY2_RAT    (Q923I8), CRYD_DANRE  (Q4KML2), 
CRYD_IDILO  (Q5QXE0), CRYD_NATPD  (Q3IPX9), CRYD_NEUCR  (Q7SI68), 
CRYD_ORYSJ  (Q651U1), CRYD_SOLLC  (Q38JU2), CRYD_VIBCH  (Q9KR33), 
CRYD_VIBPA  (Q87JP5), CRYD_XENLA  (Q75WS4), UVR3_ARATH  (O48652), 
UVR3_ORYSJ  (Q0E2Y1)
» More

PDB
[Detailed view]
17 PDB

1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09; 4U63
» More

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