Entry: PS00394

General information about the entry

Entry name [info] DNA_PHOTOLYASES_1_1
Accession [info] PS00394
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); NOV-1997 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00331

Name and characterization of the entry

Description [info] DNA photolyases class 1 signature 1.
Pattern [info]
T-G-x-P-[LIVM](2)-D-A-x-M-[RA]-x-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 26 in 26 different sequences
Number of true positive hits 26 in 26 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 25
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 50.98 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
26 sequences

CRY1_AEDAE  (Q17DK5    ), CRY1_ANOGA  (Q7PYI7    ), CRY1_ARATH  (Q43125    ), 
CRY1_CULQU  (B0WRR9    ), CRY1_SINAL  (P40115    ), CRY2_ARATH  (Q96524    ), 
CRY2_VIBCH  (Q9KS67    ), CRYD_GLOVI  (Q7NMD1    ), CRYD_OSTTA  (Q5IFN2    ), 
CRYD_RHOBA  (Q7UJB1    ), CRYD_SYNY3  (P77967    ), PHRA_AGRFC  (A9CJC9    ), 
PHR_BACPE   (Q04449    ), PHR_BUCAI   (P57386    ), PHR_BUCBP   (Q89AJ9    ), 
PHR_ECOLI   (P00914    ), PHR_HALSA   (Q9HQ46    ), PHR_NEUCR   (P27526    ), 
PHR_SALTY   (P25078    ), PHR_STRGR   (P12768    ), PHR_SYNP6   (P05327    ), 
PHR_SYNY3   (Q55081    ), PHR_THET2   (P61496    ), PHR_THET8   (P61497    ), 
PHR_VIBCH   (Q9KNA8    ), PHR_YEAST   (P05066    )
» more

UniProtKB/Swiss-Prot
False negative sequences
25 sequences

CRY1_CHICK  (Q8QG61    ), CRY1_DROME  (O77059    ), CRY1_DROPS  (Q293P8    ), 
CRY1_ERIRU  (Q5IZC5    ), CRY1_HUMAN  (Q16526    ), CRY1_MACFA  (Q8WP19    ), 
CRY1_MOUSE  (P97784    ), CRY1_RAT    (Q32Q86    ), CRY1_SPAJD  (Q70AD6    ), 
CRY1_SYLBO  (Q6ZZY0    ), CRY2_CHICK  (Q8QG60    ), CRY2_HUMAN  (Q49AN0    ), 
CRY2_MOUSE  (Q9R194    ), CRY2_RAT    (Q923I8    ), CRYD_DANRE  (Q4KML2    ), 
CRYD_IDILO  (Q5QXE0    ), CRYD_NATPD  (Q3IPX9    ), CRYD_NEUCR  (Q7SI68    ), 
CRYD_ORYSJ  (Q651U1    ), CRYD_SOLLC  (Q38JU2    ), CRYD_VIBCH  (Q9KR33    ), 
CRYD_VIBPA  (Q87JP5    ), CRYD_XENLA  (Q75WS4    ), UVR3_ARATH  (O48652    ), 
UVR3_ORYSJ  (Q0E2Y1    )
» more

PDB
[Detailed view]
17 PDB

1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09; 4U63
» more

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