Entry: PS00394

General information about the entry
Entry name DNA_PHOTOLYASES_1_1
Accession number PS00394
Entry type PATTERN
Date NOV-1990 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00331
Name and characterization of the entry
DescriptionDNA photolyases class 1 signature 1.
Pattern T-G-x-P-[LIVM](2)-D-A-x-M-[RA]-x-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 25 hits in 25 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 25 hits in 25 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 25
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 50.00 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CRY1_AEDAE  (Q17DK5), CRY1_ANOGA  (Q7PYI7), CRY1_ARATH  (Q43125), 
CRY1_CULQU  (B0WRR9), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 
CRY2_VIBCH  (Q9KS67), CRYD_GLOVI  (Q7NMD1), CRYD_OSTTA  (Q5IFN2), 
CRYD_RHOBA  (Q7UJB1), CRYD_SYNY3  (P77967), PHR_BACPE   (Q04449), 
PHR_BUCAI   (P57386), PHR_BUCBP   (Q89AJ9), PHR_ECOLI   (P00914), 
PHR_HALSA   (Q9HQ46), PHR_NEUCR   (P27526), PHR_SALTY   (P25078), 
PHR_STRGR   (P12768), PHR_SYNP6   (P05327), PHR_SYNY3   (Q55081), 
PHR_THET2   (P61496), PHR_THET8   (P61497), PHR_VIBCH   (Q9KNA8), 
PHR_YEAST   (P05066)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CRY1_CHICK  (Q8QG61), CRY1_DROME  (O77059), CRY1_DROPS  (Q293P8), 
CRY1_ERIRU  (Q5IZC5), CRY1_HUMAN  (Q16526), CRY1_MACFA  (Q8WP19), 
CRY1_MOUSE  (P97784), CRY1_RAT    (Q32Q86), CRY1_SPAJD  (Q70AD6), 
CRY1_SYLBO  (Q6ZZY0), CRY2_CHICK  (Q8QG60), CRY2_HUMAN  (Q49AN0), 
CRY2_MOUSE  (Q9R194), CRY2_RAT    (Q923I8), CRYD_DANRE  (Q4KML2), 
CRYD_IDILO  (Q5QXE0), CRYD_NATPD  (Q3IPX9), CRYD_NEUCR  (Q7SI68), 
CRYD_ORYSJ  (Q651U1), CRYD_SOLLC  (Q38JU2), CRYD_VIBCH  (Q9KR33), 
CRYD_VIBPA  (Q87JP5), CRYD_XENLA  (Q75WS4), UVR3_ARATH  (O48652), 
UVR3_ORYSJ  (Q0E2Y1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1DNP; 1IQR; 1IQU; 1NP7; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09;

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