Entry: PS00397

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General information about the entry

Entry name [info] RECOMBINASES_1
Accession [info] PS00397
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-1991 (DATA UPDATE); SEP-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00334
Associated ProRule [info] PRU10137

Name and characterization of the entry

Description [info] Site-specific recombinases active site.
Pattern [info]
Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_10 which contains 546'790 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 91.67 %
Recall (true positives / (true positives + false negatives)) 80.49 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
33 sequences

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 
CISA_BACSU  (P17867), DNIV_BPP1   (P10311), DNIV_BPP7   (P21703), 
GIN_BPD10   (Q38199), GIN_BPMU    (P03015), HIN_SALAE   (Q02869), 
HIN_SALTY   (P03013), PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), 
RES4_ECOLX  (P13606), RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), 
STBA_PSEUB  (Q52563), TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), 
TNR1_ECOLI  (P03012), TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), 
TNR3_KLEPN  (P0ADI3), TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), 
TNR6_ENTFC  (Q06237), TNR7_ECOLX  (P0C1G2), TNR7_ENTFL  (P06693), 
TNR7_PSEPU  (P0C1G3), Y4CG_RHISN  (P55389), YIM3_BPPH1  (P10427), 
YL103_MIMIV (Q5UPI1), YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

ISTA_PSEAI  (P15025), PINQ_ECOLI  (P77170), PINR_ECOL6  (P0ADI1), 
PINR_ECOLI  (P0ADI0), UVP1_ECOLX  (P18957), Y4LS_RHISN  (P55559), 
YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PINH_ECOLI  (P76611)

		
UniProtKB/Swiss-Prot
False positive sequences
3 sequences

CCKNA_XENLA (P50144), CCKNB_XENLA (P50145), TRY3_AEDAE  (P29786)

		
PDB
[Detailed view]
11 PDB

1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ; 4M6F

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