Entry: PS00397

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General information about the entry

Entry name [info] RECOMBINASES_1
Accession [info] PS00397
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-1991 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00334
Associated ProRule [info] PRU10137

Name and characterization of the entry

Description [info] Site-specific recombinases active site.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.

Total number of hits 35 in 35 different sequences
Number of true positive hits 32 in 32 different sequences
Number of 'unknown' hits
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 91.43 %
Recall (true positives / (true positives + false negatives)) 80.00 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Version [info] 1

Cross-references [info]

True positive sequences
32 sequences

BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 
CISA_BACSU  (P17867), DNIV_BPMU   (P03015), DNIV_BPP1   (P10311), 
DNIV_BPP7   (P21703), HIN_SALAE   (Q02869), HIN_SALTY   (P03013), 
PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), RES4_ECOLX  (P13606), 
RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), STBA_PSEUB  (Q52563), 
TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), TNR1_ECOLI  (P03012), 
TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), TNR3_KLEPN  (P0ADI3), 
TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), TNR6_ENTFC  (Q06237), 
TNR7_ECOLX  (P0C1G2), TNR7_ENTFL  (P06693), TNR7_PSEPU  (P0C1G3), 
Y4CG_RHISN  (P55389), YIM3_BPPH1  (P10427), YL103_MIMIV (Q5UPI1), 
» More

False negative sequences
8 sequences

ISTA_PSEAI  (P15025), PINQ_ECOLI  (P77170), PINR_ECOL6  (P0ADI1), 
PINR_ECOLI  (P0ADI0), UVP1_ECOLX  (P18957), Y4LS_RHISN  (P55559), 
YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006)
» More

'Partial' sequences
2 sequences

DNIV_BPD10  (Q38199), PINH_ECOLI  (P76611)

False positive sequences
3 sequences

CCKNA_XENLA (P50144), CCKNB_XENLA (P50145), TRY3_AEDAE  (P29786)

[Detailed view]
10 PDB

1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ

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