Entry: PS00397

General information about the entry

Entry name [info] RECOMBINASES_1
Accession [info] PS00397
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-1991 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00334
Associated ProRule [info] PRU10137

Name and characterization of the entry

Description [info] Site-specific recombinases active site.
Pattern [info]
Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 36 in 36 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits 0
Number of false positive hits 3 in 3 different sequences
Number of false negative sequences 8
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 91.67 %
Recall (true positives / (true positives + false negatives)) 80.49 %

Comments [info]

Taxonomic range [info] Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] active_site at position 5
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
33 sequences

BIN3_STAAU  (P20384    ), BINL_STAAU  (P18358    ), BINR_STAAU  (P19241    ), 
CIN_BPP1    (P10311    ), CIN_BPP7    (P21703    ), CISA_BACSU  (P17867    ), 
GIN_BPD10   (Q38199    ), GIN_BPMU    (P03015    ), HIN_SALAE   (Q02869    ), 
HIN_SALTY   (P03013    ), PARA4_ECOLX (P22996    ), PINE_ECOLI  (P03014    ), 
RES4_ECOLX  (P13606    ), RES_CLOPE   (Q93MD2    ), RES_CLOPF   (P07945    ), 
STBA_PSEUB  (Q52563    ), TNPT_PSEPU  (P30739    ), TNR0_ECOLX  (P05823    ), 
TNR1_ECOLI  (P03012    ), TNR2_ECOLX  (P04130    ), TNR3_ECOLX  (P0ADI2    ), 
TNR3_KLEPN  (P0ADI3    ), TNR4_KLEPN  (P21424    ), TNR5_PSEAI  (P06691    ), 
TNR6_ENTFC  (Q06237    ), TNR7_ECOLX  (P0C1G2    ), TNR7_ENTFL  (P06693    ), 
TNR7_PSEPU  (P0C1G3    ), Y4CG_SINFN  (P55389    ), YIM3_BPPH1  (P10427    ), 
YL103_MIMIV (Q5UPI1    ), YR080_MIMIV (Q5UPF4    ), YR771_MIMIV (Q5UPQ7    )
» more

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

ISTA_PSEAI  (P15025    ), PINQ_ECOLI  (P77170    ), PINR_ECOL6  (P0ADI1    ), 
PINR_ECOLI  (P0ADI0    ), UVP1_ECOLX  (P18957    ), Y4LS_SINFN  (P55559    ), 
YNEB_BACSU  (Q45057    ), YOKA_BACSU  (O32006    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

PINH_ECOLI  (P76611    )

		
UniProtKB/Swiss-Prot
False positive sequences
3 sequences

CCKNA_XENLA (P50144    ), CCKNB_XENLA (P50145    ), TRY3_AEDAE  (P29786    )

		
PDB
[Detailed view]
11 PDB

1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ; 4M6F

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