Entry: PS00397

General information about the entry
Entry name RECOMBINASES_1
Accession number PS00397
Entry type PATTERN
Date NOV-1990 (CREATED); DEC-1991 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00334
Associated ProRule PRU10137
Name and characterization of the entry
DescriptionSite-specific recombinases active site.
Pattern Y-[LIVAC]-R-[VA]-S-[ST]-x(2)-Q.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 35 hits in 35 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 32 hits in 32 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 3 hits in 3 different sequences
  • Number of known missed hits: 8
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 91.43 %
  • Recall (true hits / (true hits + false negatives)): 80.00 %
Comments
  • Taxonomic range: Bacteriophages, Prokaryotes (Bacteria), Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 5,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BIN3_STAAU  (P20384), BINL_STAAU  (P18358), BINR_STAAU  (P19241), 
CISA_BACSU  (P17867), DNIV_BPMU   (P03015), DNIV_BPP1   (P10311), 
DNIV_BPP7   (P21703), HIN_SALAE   (Q02869), HIN_SALTY   (P03013), 
PARA4_ECOLX (P22996), PINE_ECOLI  (P03014), RES4_ECOLX  (P13606), 
RES_CLOPE   (Q93MD2), RES_CLOPF   (P07945), STBA_PSEUB  (Q52563), 
TNPT_PSEPU  (P30739), TNR0_ECOLX  (P05823), TNR1_ECOLI  (P03012), 
TNR2_ECOLX  (P04130), TNR3_ECOLX  (P0ADI2), TNR3_KLEPN  (P0ADI3), 
TNR4_KLEPN  (P21424), TNR5_PSEAI  (P06691), TNR6_ENTFC  (Q06237), 
TNR7_ECOLX  (P0C1G2), TNR7_ENTFL  (P06693), TNR7_PSEPU  (P0C1G3), 
Y4CG_RHISN  (P55389), YIM3_BPPH1  (P10427), YL103_MIMIV (Q5UPI1), 
YR080_MIMIV (Q5UPF4), YR771_MIMIV (Q5UPQ7)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ISTA_PSEAI  (P15025), PINQ_ECOLI  (P77170), PINR_ECOL6  (P0ADI1), 
PINR_ECOLI  (P0ADI0), UVP1_ECOLX  (P18957), Y4LS_RHISN  (P55559), 
YNEB_BACSU  (Q45057), YOKA_BACSU  (O32006)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
DNIV_BPD10  (Q38199), PINH_ECOLI  (P76611)
False positive hits (sequences which do not belong to the set under consideration):
CCKNA_XENLA (P50144), CCKNB_XENLA (P50145), TRY3_AEDAE  (P29786)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1GDT; 1GHT; 1HX7; 1ZR2; 1ZR4; 2GM4; 2GM5; 2R0Q; 2RSL; 3PKZ;

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