Entry: PS00420

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General information about the entry

Entry name [info] SRCR_1
Accession [info] PS00420
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00348

Name and characterization of the entry

Description [info] SRCR domain signature.
Pattern [info]
[GNRVM]-x(5)-[GLKA]-x(2)-[EQ]-x(6)-[WPS]-[GLKH]-x(2)-C-x(3)-[FYW]-x(8)-
[CM]-x(3)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 178 in 79 different sequences
Number of true positive hits 178 in 79 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 20
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.90 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 13
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

C163A_BOVIN (P85521), C163A_CANFA (Q2VLG6), C163A_CHLAE (Q2VLG4), 
C163A_HUMAN (Q86VB7), C163A_MOUSE (Q2VLH6), C163A_PIG   (Q2VL90), 
C163B_HUMAN (Q9NR16), CD5L_HUMAN  (O43866), CD5L_MOUSE  (Q9QWK4), 
CD6_HUMAN   (P30203), CORIN_HUMAN (Q9Y5Q5), CORIN_MOUSE (Q9Z319), 
CORIN_RAT   (Q80YN4), DMBT1_HUMAN (Q9UGM3), DMBT1_MOUSE (Q60997), 
DMBT1_PIG   (Q4A3R3), DMBT1_RABIT (Q95218), DMBT1_RAT   (Q8CIZ5), 
DMBTL_MOUSE (Q8BZE1), ENTK_BOVIN  (P98072), ENTK_MOUSE  (P97435), 
ENTK_PIG    (P98074), HIPL1_HUMAN (Q96JK4), HIPL1_MOUSE (Q14DK5), 
L3BPA_DANRE (Q24JV9), L3BPB_DANRE (Q6NY73), LG3BP_BOVIN (A7E3W2), 
LG3BP_HUMAN (Q08380), LG3BP_MESAU (P70117), LG3BP_MOUSE (Q07797), 
LG3BP_PONAB (Q5RDA4), LG3BP_RAT   (O70513), LOL2A_DANRE (F1QQC3), 
LOL2B_DANRE (A1L1V4), LOXL2_BOVIN (A6H737), LOXL2_CHICK (E1C3U7), 
LOXL2_HUMAN (Q9Y4K0), LOXL2_MOUSE (P58022), LOXL2_PONAB (Q5RFQ6), 
LOXL2_RAT   (B5DF27), LOXL2_XENLA (Q08B63), LOXL2_XENTR (B4F6N6), 
LOXL3_HUMAN (P58215), LOXL3_MOUSE (Q9Z175), LOXL4_BOVIN (Q8MJ24), 
LOXL4_HUMAN (Q96JB6), LOXL4_MOUSE (Q924C6), MARCO_HUMAN (Q9UEW3), 
MARCO_MESAU (Q9WUB9), MARCO_MOUSE (Q60754), MSRE_BOVIN  (P21758), 
MSRE_HUMAN  (P21757), MSRE_MOUSE  (P30204), MSRE_RABIT  (Q05585), 
NETR_GORGO  (Q5G270), NETR_HUMAN  (P56730), NETR_MACMU  (Q5G267), 
NETR_MOUSE  (O08762), NETR_NOMLE  (Q5G268), NETR_PANTR  (Q5G271), 
NETR_PONPY  (Q5G269), NETR_RAT    (G3V801), NETR_SAGLB  (Q5G265), 
NETR_TRAPH  (Q5G266), SCAR5_BOVIN (A5PJQ2), SCAR5_DANRE (Q5RFW0), 
SCAR5_HUMAN (Q6ZMJ2), SCAR5_MOUSE (Q8K299), SPER_STRPU  (P16264), 
SRB4D_HUMAN (Q8WTU2), SRB4D_MOUSE (A1L0T3), SRCR1_PATPE (F7J220), 
SRCRL_HUMAN (A1L4H1), SRCRL_MOUSE (Q8BV57), SRCRM_HUMAN (Q4G0T1), 
TMPS3_HUMAN (P57727), TMPS5_HUMAN (Q9H3S3), TMPS5_MOUSE (Q9ER04), 
WC11_BOVIN  (P30205)
» More

UniProtKB/Swiss-Prot
False negative sequences
20 sequences

CD5_BOVIN   (P19238), CD5_HUMAN   (P06127), CD5_MOUSE   (P13379), 
CD5_RAT     (P51882), CD6_MOUSE   (Q61003), CFAI_HUMAN  (P05156), 
CFAI_MOUSE  (Q61129), CFAI_PONAB  (Q5R5A4), CFAI_RAT    (Q9WUW3), 
ENTK_HUMAN  (P98073), HEPS_HUMAN  (P05981), HEPS_MOUSE  (O35453), 
HEPS_PONAB  (Q5R5E8), HEPS_RAT    (Q05511), TMPS2_HUMAN (O15393), 
TMPS2_MOUSE (Q9JIQ8), TMPS4_HUMAN (Q9NRS4), TMPS4_MOUSE (Q8VCA5), 
TMPSD_HUMAN (Q9BYE2), TMPSD_MOUSE (Q5U405)
» More

PDB
[Detailed view]
3 PDB

1BY2; 2OY3; 2OYA

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