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Entry: PS00420

General information about the entry

Entry name [info] SRCR_1
Accession [info] PS00420
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED; 01-DEC-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00348

Name and characterization of the entry

Description [info] SRCR domain signature.
Pattern [info]
[GNRVM]-x(5)-[GLKA]-x(2)-[EQ]-x(6)-[WPS]-[GLKH]-x(2)-C-x(3)-[FYW]-x(8)-
[CM]-x(3)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 183 in 82 different sequences
Number of true positive hits 183 in 82 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 20
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 90.15 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 13
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
82 sequences

BARK_DROME  (M9NDE3    ), C163A_BOVIN (P85521    ), C163A_CANLF (Q2VLG6    ), 
C163A_CHLAE (Q2VLG4    ), C163A_HUMAN (Q86VB7    ), C163A_MOUSE (Q2VLH6    ), 
C163A_PIG   (Q2VL90    ), C163B_HUMAN (Q9NR16    ), CD5L_HUMAN  (O43866    ), 
CD5L_MOUSE  (Q9QWK4    ), CD6_HUMAN   (P30203    ), CORIN_HUMAN (Q9Y5Q5    ), 
CORIN_MOUSE (Q9Z319    ), CORIN_RAT   (Q80YN4    ), DMBT1_HUMAN (Q9UGM3    ), 
DMBT1_MOUSE (Q60997    ), DMBT1_PIG   (Q4A3R3    ), DMBT1_RABIT (Q95218    ), 
DMBT1_RAT   (Q8CIZ5    ), DMBTL_MOUSE (Q8BZE1    ), ENTK_BOVIN  (P98072    ), 
ENTK_MOUSE  (P97435    ), ENTK_PIG    (P98074    ), HIPL1_HUMAN (Q96JK4    ), 
HIPL1_MOUSE (Q14DK5    ), L3BPA_DANRE (Q24JV9    ), L3BPB_DANRE (Q6NY73    ), 
LG3BP_BOVIN (A7E3W2    ), LG3BP_HUMAN (Q08380    ), LG3BP_MESAU (P70117    ), 
LG3BP_MOUSE (Q07797    ), LG3BP_PONAB (Q5RDA4    ), LG3BP_RAT   (O70513    ), 
LOL2A_DANRE (F1QQC3    ), LOL2B_DANRE (A1L1V4    ), LOX3A_DANRE (F1RD85    ), 
LOX3B_DANRE (B8A4W9    ), LOXL2_BOVIN (A6H737    ), LOXL2_CHICK (E1C3U7    ), 
LOXL2_HUMAN (Q9Y4K0    ), LOXL2_MOUSE (P58022    ), LOXL2_PONAB (Q5RFQ6    ), 
LOXL2_RAT   (B5DF27    ), LOXL2_XENLA (Q08B63    ), LOXL2_XENTR (B4F6N6    ), 
LOXL3_HUMAN (P58215    ), LOXL3_MOUSE (Q9Z175    ), LOXL4_BOVIN (Q8MJ24    ), 
LOXL4_HUMAN (Q96JB6    ), LOXL4_MOUSE (Q924C6    ), MARCO_HUMAN (Q9UEW3    ), 
MARCO_MESAU (Q9WUB9    ), MARCO_MOUSE (Q60754    ), MSRE_BOVIN  (P21758    ), 
MSRE_HUMAN  (P21757    ), MSRE_MOUSE  (P30204    ), MSRE_RABIT  (Q05585    ), 
NETR_GORGO  (Q5G270    ), NETR_HUMAN  (P56730    ), NETR_MACMU  (Q5G267    ), 
NETR_MOUSE  (O08762    ), NETR_NOMLE  (Q5G268    ), NETR_PANTR  (Q5G271    ), 
NETR_PONPY  (Q5G269    ), NETR_RAT    (G3V801    ), NETR_SAGLB  (Q5G265    ), 
NETR_TRAPH  (Q5G266    ), SCAR5_BOVIN (A5PJQ2    ), SCAR5_DANRE (Q5RFW0    ), 
SCAR5_HUMAN (Q6ZMJ2    ), SCAR5_MOUSE (Q8K299    ), SPER_STRPU  (P16264    ), 
SRB4D_HUMAN (Q8WTU2    ), SRB4D_MOUSE (A1L0T3    ), SRCR1_PATPE (F7J220    ), 
SRCRL_HUMAN (A1L4H1    ), SRCRL_MOUSE (Q8BV57    ), SRCRM_HUMAN (Q4G0T1    ), 
TMPS3_HUMAN (P57727    ), TMPS5_HUMAN (Q9H3S3    ), TMPS5_MOUSE (Q9ER04    ), 
WC11_BOVIN  (P30205    )
» more

UniProtKB/Swiss-Prot
False negative sequences
20 sequences

CD5_BOVIN   (P19238    ), CD5_HUMAN   (P06127    ), CD5_MOUSE   (P13379    ), 
CD5_RAT     (P51882    ), CD6_MOUSE   (Q61003    ), CFAI_HUMAN  (P05156    ), 
CFAI_MOUSE  (Q61129    ), CFAI_PONAB  (Q5R5A4    ), CFAI_RAT    (Q9WUW3    ), 
ENTK_HUMAN  (P98073    ), HEPS_HUMAN  (P05981    ), HEPS_MOUSE  (O35453    ), 
HEPS_PONAB  (Q5R5E8    ), HEPS_RAT    (Q05511    ), TMPS2_HUMAN (O15393    ), 
TMPS2_MOUSE (Q9JIQ8    ), TMPS4_HUMAN (Q9NRS4    ), TMPS4_MOUSE (Q8VCA5    ), 
TMPSD_HUMAN (Q9BYE2    ), TMPSD_MOUSE (Q5U405    )
» more

PDB
[Detailed view]
4 PDB

1BY2; 2OY3; 2OYA; 5A2E

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