Entry: PS00420

General information about the entry

Entry name [info] SRCR_1
Accession [info] PS00420
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00348

Name and characterization of the entry

Description [info] SRCR domain signature.
Pattern [info]
[GNRVM]-x(5)-[GLKA]-x(2)-[EQ]-x(6)-[WPS]-[GLKH]-x(2)-C-x(3)-[FYW]-x(8)-
[CM]-x(3)-G.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 178 in 79 different sequences
Number of true positive hits 178 in 79 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 20
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.90 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 13
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

C163A_BOVIN (P85521), C163A_CANFA (Q2VLG6), C163A_CHLAE (Q2VLG4), 
C163A_HUMAN (Q86VB7), C163A_MOUSE (Q2VLH6), C163A_PIG   (Q2VL90), 
C163B_HUMAN (Q9NR16), CD5L_HUMAN  (O43866), CD5L_MOUSE  (Q9QWK4), 
CD6_HUMAN   (P30203), CORIN_HUMAN (Q9Y5Q5), CORIN_MOUSE (Q9Z319), 
CORIN_RAT   (Q80YN4), DMBT1_HUMAN (Q9UGM3), DMBT1_MOUSE (Q60997), 
DMBT1_PIG   (Q4A3R3), DMBT1_RABIT (Q95218), DMBT1_RAT   (Q8CIZ5), 
DMBTL_MOUSE (Q8BZE1), ENTK_BOVIN  (P98072), ENTK_MOUSE  (P97435), 
ENTK_PIG    (P98074), HIPL1_HUMAN (Q96JK4), HIPL1_MOUSE (Q14DK5), 
L3BPA_DANRE (Q24JV9), L3BPB_DANRE (Q6NY73), LG3BP_BOVIN (A7E3W2), 
LG3BP_HUMAN (Q08380), LG3BP_MESAU (P70117), LG3BP_MOUSE (Q07797), 
LG3BP_PONAB (Q5RDA4), LG3BP_RAT   (O70513), LOL2A_DANRE (F1QQC3), 
LOL2B_DANRE (A1L1V4), LOXL2_BOVIN (A6H737), LOXL2_CHICK (E1C3U7), 
LOXL2_HUMAN (Q9Y4K0), LOXL2_MOUSE (P58022), LOXL2_PONAB (Q5RFQ6), 
LOXL2_RAT   (B5DF27), LOXL2_XENLA (Q08B63), LOXL2_XENTR (B4F6N6), 
LOXL3_HUMAN (P58215), LOXL3_MOUSE (Q9Z175), LOXL4_BOVIN (Q8MJ24), 
LOXL4_HUMAN (Q96JB6), LOXL4_MOUSE (Q924C6), MARCO_HUMAN (Q9UEW3), 
MARCO_MESAU (Q9WUB9), MARCO_MOUSE (Q60754), MSRE_BOVIN  (P21758), 
MSRE_HUMAN  (P21757), MSRE_MOUSE  (P30204), MSRE_RABIT  (Q05585), 
NETR_GORGO  (Q5G270), NETR_HUMAN  (P56730), NETR_MACMU  (Q5G267), 
NETR_MOUSE  (O08762), NETR_NOMLE  (Q5G268), NETR_PANTR  (Q5G271), 
NETR_PONPY  (Q5G269), NETR_RAT    (G3V801), NETR_SAGLB  (Q5G265), 
NETR_TRAPH  (Q5G266), SCAR5_BOVIN (A5PJQ2), SCAR5_DANRE (Q5RFW0), 
SCAR5_HUMAN (Q6ZMJ2), SCAR5_MOUSE (Q8K299), SPER_STRPU  (P16264), 
SRB4D_HUMAN (Q8WTU2), SRB4D_MOUSE (A1L0T3), SRCR1_PATPE (F7J220), 
SRCRL_HUMAN (A1L4H1), SRCRL_MOUSE (Q8BV57), SRCRM_HUMAN (Q4G0T1), 
TMPS3_HUMAN (P57727), TMPS5_HUMAN (Q9H3S3), TMPS5_MOUSE (Q9ER04), 
WC11_BOVIN  (P30205)
» More

UniProtKB/Swiss-Prot
False negative sequences
20 sequences

CD5_BOVIN   (P19238), CD5_HUMAN   (P06127), CD5_MOUSE   (P13379), 
CD5_RAT     (P51882), CD6_MOUSE   (Q61003), CFAI_HUMAN  (P05156), 
CFAI_MOUSE  (Q61129), CFAI_PONAB  (Q5R5A4), CFAI_RAT    (Q9WUW3), 
ENTK_HUMAN  (P98073), HEPS_HUMAN  (P05981), HEPS_MOUSE  (O35453), 
HEPS_PONAB  (Q5R5E8), HEPS_RAT    (Q05511), TMPS2_HUMAN (O15393), 
TMPS2_MOUSE (Q9JIQ8), TMPS4_HUMAN (Q9NRS4), TMPS4_MOUSE (Q8VCA5), 
TMPSD_HUMAN (Q9BYE2), TMPSD_MOUSE (Q5U405)
» More

PDB
[Detailed view]
3 PDB

1BY2; 2OY3; 2OYA

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission