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Entry: PS00421

General information about the entry

Entry name [info] TM4_1
Accession [info] PS00421
Entry type [info] PATTERN
Date [info] 01-NOV-1990 CREATED; 01-DEC-2004 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00371

Name and characterization of the entry

Description [info] Transmembrane 4 family signature.
Pattern [info]
[GC]-x(3)-[LIVMFS]-x(2)-[GSA]-[LIVMFTC]-[LIVMFA]-G-[CLYI]-x-[GA]-[STAPL]-
x(2)-[EGAR]-x(2)-[CWNLF]-[LIVMGA]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 99 in 99 different sequences
Number of true positive hits 98 in 98 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 45
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 98.99 %
Recall (true positives / (true positives + false negatives)) 68.53 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
98 sequences

CD151_CHLAE (P61170    ), CD151_HUMAN (P48509    ), CD151_MACMU (P61171    ), 
CD151_MOUSE (O35566    ), CD151_RAT   (Q9QZA6    ), CD37_BOVIN  (Q2KHY8    ), 
CD37_HUMAN  (P11049    ), CD37_MOUSE  (Q61470    ), CD37_RAT    (P31053    ), 
CD53_BOVIN  (Q58DM3    ), CD53_HUMAN  (P19397    ), CD53_MOUSE  (Q61451    ), 
CD53_RAT    (P24485    ), CD63_BOVIN  (Q9XSK2    ), CD63_FELCA  (Q76B49    ), 
CD63_HUMAN  (P08962    ), CD63_MOUSE  (P41731    ), CD63_RABIT  (Q28709    ), 
CD63_RAT    (P28648    ), CD81_BOVIN  (Q3ZCD0    ), CD81_CHLAE  (O97703    ), 
CD81_HUMAN  (P60033    ), CD81_MOUSE  (P35762    ), CD81_PANTR  (P60034    ), 
CD81_RAT    (Q62745    ), CD81_SAGOE  (Q9N0J9    ), CD82_HUMAN  (P27701    ), 
CD82_MOUSE  (P40237    ), CD82_RAT    (O70352    ), CD9_BOVIN   (P30932    ), 
CD9_CHLAE   (P30409    ), CD9_FELCA   (P40239    ), CD9_HUMAN   (P21926    ), 
CD9_MOUSE   (P40240    ), CD9_PIG     (Q8WMQ3    ), CD9_RAT     (P40241    ), 
IM23_SCHHA  (Q26499    ), IM23_SCHJA  (P27591    ), IM23_SCHMA  (P19331    ), 
IM25_SCHJA  (P91799    ), TET7_ARATH  (Q9SUD4    ), TET8_ARATH  (Q8S8Q6    ), 
TSN10_HUMAN (Q9H1Z9    ), TSN12_BOVIN (Q29RH7    ), TSN12_CHICK (Q5ZIF5    ), 
TSN12_HUMAN (O95859    ), TSN12_MOUSE (Q8BKT6    ), TSN12_PONAB (Q5R8B5    ), 
TSN12_RAT   (Q569A2    ), TSN14_HUMAN (Q8NG11    ), TSN14_MOUSE (Q8QZY6    ), 
TSN17_BOVIN (Q58DN3    ), TSN17_HUMAN (Q96FV3    ), TSN17_MOUSE (Q9D7W4    ), 
TSN17_RAT   (Q4V8E0    ), TSN18_BOVIN (Q58CY8    ), TSN18_HUMAN (Q96SJ8    ), 
TSN18_MOUSE (Q80WR1    ), TSN1_BOVIN  (Q3T0S3    ), TSN1_HUMAN  (O60635    ), 
TSN1_MACFA  (Q4R7W6    ), TSN1_MOUSE  (Q99J59    ), TSN1_PONAB  (Q5RC27    ), 
TSN1_RAT    (Q6AYR9    ), TSN2_HUMAN  (O60636    ), TSN2_MOUSE  (Q922J6    ), 
TSN2_RAT    (Q9JJW1    ), TSN3_BOVIN  (Q3SZR9    ), TSN3_HUMAN  (O60637    ), 
TSN3_MOUSE  (Q9QY33    ), TSN3_PONAB  (Q5RE11    ), TSN4_HUMAN  (O14817    ), 
TSN4_MOUSE  (Q9DCK3    ), TSN4_PONAB  (Q5RAP3    ), TSN5_BOVIN  (Q17QJ5    ), 
TSN5_HUMAN  (P62079    ), TSN5_MOUSE  (P62080    ), TSN5_RAT    (Q68VK5    ), 
TSN6_BOVIN  (Q32KU6    ), TSN6_HUMAN  (O43657    ), TSN6_PONAB  (Q5RAS5    ), 
TSN7_HUMAN  (P41732    ), TSN7_MOUSE  (Q62283    ), TSN7_PANTR  (Q7YQL0    ), 
TSN7_PONPY  (Q7YQK9    ), TSN8_BOVIN  (Q2KIS9    ), TSN8_HUMAN  (P19075    ), 
TSN8_MOUSE  (Q8R3G9    ), TSN8_PONAB  (Q5R9S6    ), TSN9_DANRE  (Q6GMK6    ), 
TSN9_HUMAN  (O75954    ), TSN9_MOUSE  (Q8BJU2    ), TSN9_PIG    (Q06AA5    ), 
TSN9_SALSA  (B5X3I6    ), TSN9_SHEEP  (B3VSC2    ), TSN9_XENLA  (Q6DCQ3    ), 
TSN9_XENTR  (B0BM39    ), TSP17_CAEEL (Q11098    )
» more

UniProtKB/Swiss-Prot
False negative sequences
45 sequences

CD151_BOVIN (Q3ZBH3    ), TET10_ARATH (F4I214    ), TET11_ARATH (Q9LPR6    ), 
TET12_ARATH (Q9FN51    ), TET13_ARATH (Q9SI56    ), TET14_ARATH (Q58G33    ), 
TET15_ARATH (Q1PDI1    ), TET16_ARATH (Q5BQ04    ), TET17_ARATH (Q58G35    ), 
TET18_ARATH (Q93XY5    ), TET19_ARATH (Q940P5    ), TET20_ARATH (Q9SVU4    ), 
TET2_ARATH  (Q9ZUN5    ), TET3_ARATH  (Q9M1E7    ), TET4_ARATH  (Q9LSS4    ), 
TET5_ARATH  (Q84WF6    ), TET6_ARATH  (Q9C7C1    ), TET9_ARATH  (Q9M0B7    ), 
TRN2_ARATH  (Q9FIQ5    ), TS31A_XENLA (Q5XHG6    ), TS31B_XENLA (Q7ZWW7    ), 
TSN10_MOUSE (Q8VCF5    ), TSN11_BOVIN (Q0VC33    ), TSN11_HUMAN (A1L157    ), 
TSN11_MOUSE (Q9D1D1    ), TSN11_RAT   (Q568Y5    ), TSN13_BOVIN (Q3ZBV0    ), 
TSN13_HUMAN (O95857    ), TSN13_MOUSE (Q9D8C2    ), TSN13_RAT   (Q5FVL6    ), 
TSN15_BOVIN (Q1JQA4    ), TSN15_HUMAN (O95858    ), TSN15_MOUSE (F7BWT7    ), 
TSN16_HUMAN (Q9UKR8    ), TSN31_BOVIN (Q32KP1    ), TSN31_DANRE (Q7ZUB3    ), 
TSN31_HUMAN (Q12999    ), TSN31_MOUSE (Q9CQ88    ), TSN31_PIG   (Q29257    ), 
TSN31_PONAB (Q5RAP8    ), TSN31_RAT   (Q5U1V9    ), TSN6_MOUSE  (O70401    ), 
TSP12_CAEEL (Q22495    ), TSP14_CAEEL (H2L006    ), TSP1_CAEEL  (P34285    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

NRTP_SYNP2  (B1XLL7    )

		

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