Entry: PS00421

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General information about the entry

Entry name [info] TM4_1
Accession [info] PS00421
Entry type [info] PATTERN
Date [info] NOV-1990 (CREATED); DEC-2004 (DATA UPDATE); OCT-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00371

Name and characterization of the entry

Description [info] Transmembrane 4 family signature.
Pattern [info]
[GC]-x(3)-[LIVMFS]-x(2)-[GSA]-[LIVMFTC]-[LIVMFA]-G-[CLYI]-x-[GA]-[STAPL]-
x(2)-[EGAR]-x(2)-[CWNLF]-[LIVMGA]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_11 which contains 547'085 sequence entries.


Total number of hits 98 in 98 different sequences
Number of true positive hits 98 in 98 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 43
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 69.50 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
98 sequences

CD151_CHLAE (P61170), CD151_HUMAN (P48509), CD151_MACMU (P61171), 
CD151_MOUSE (O35566), CD151_RAT   (Q9QZA6), CD37_BOVIN  (Q2KHY8), 
CD37_HUMAN  (P11049), CD37_MOUSE  (Q61470), CD37_RAT    (P31053), 
CD53_BOVIN  (Q58DM3), CD53_HUMAN  (P19397), CD53_MOUSE  (Q61451), 
CD53_RAT    (P24485), CD63_BOVIN  (Q9XSK2), CD63_FELCA  (Q76B49), 
CD63_HUMAN  (P08962), CD63_MOUSE  (P41731), CD63_RABIT  (Q28709), 
CD63_RAT    (P28648), CD81_BOVIN  (Q3ZCD0), CD81_CHLAE  (O97703), 
CD81_HUMAN  (P60033), CD81_MOUSE  (P35762), CD81_PANTR  (P60034), 
CD81_RAT    (Q62745), CD81_SAGOE  (Q9N0J9), CD82_HUMAN  (P27701), 
CD82_MOUSE  (P40237), CD82_RAT    (O70352), CD9_BOVIN   (P30932), 
CD9_CHLAE   (P30409), CD9_FELCA   (P40239), CD9_HUMAN   (P21926), 
CD9_MOUSE   (P40240), CD9_PIG     (Q8WMQ3), CD9_RAT     (P40241), 
IM23_SCHHA  (Q26499), IM23_SCHJA  (P27591), IM23_SCHMA  (P19331), 
IM25_SCHJA  (P91799), TET7_ARATH  (Q9SUD4), TET8_ARATH  (Q8S8Q6), 
TSN10_HUMAN (Q9H1Z9), TSN12_BOVIN (Q29RH7), TSN12_CHICK (Q5ZIF5), 
TSN12_HUMAN (O95859), TSN12_MOUSE (Q8BKT6), TSN12_PONAB (Q5R8B5), 
TSN12_RAT   (Q569A2), TSN14_HUMAN (Q8NG11), TSN14_MOUSE (Q8QZY6), 
TSN17_BOVIN (Q58DN3), TSN17_HUMAN (Q96FV3), TSN17_MOUSE (Q9D7W4), 
TSN17_RAT   (Q4V8E0), TSN18_BOVIN (Q58CY8), TSN18_HUMAN (Q96SJ8), 
TSN18_MOUSE (Q80WR1), TSN1_BOVIN  (Q3T0S3), TSN1_HUMAN  (O60635), 
TSN1_MACFA  (Q4R7W6), TSN1_MOUSE  (Q99J59), TSN1_PONAB  (Q5RC27), 
TSN1_RAT    (Q6AYR9), TSN2_HUMAN  (O60636), TSN2_MOUSE  (Q922J6), 
TSN2_RAT    (Q9JJW1), TSN3_BOVIN  (Q3SZR9), TSN3_HUMAN  (O60637), 
TSN3_MOUSE  (Q9QY33), TSN3_PONAB  (Q5RE11), TSN4_HUMAN  (O14817), 
TSN4_MOUSE  (Q9DCK3), TSN4_PONAB  (Q5RAP3), TSN5_BOVIN  (Q17QJ5), 
TSN5_HUMAN  (P62079), TSN5_MOUSE  (P62080), TSN5_RAT    (Q68VK5), 
TSN6_BOVIN  (Q32KU6), TSN6_HUMAN  (O43657), TSN6_PONAB  (Q5RAS5), 
TSN7_HUMAN  (P41732), TSN7_MOUSE  (Q62283), TSN7_PANTR  (Q7YQL0), 
TSN7_PONPY  (Q7YQK9), TSN8_BOVIN  (Q2KIS9), TSN8_HUMAN  (P19075), 
TSN8_MOUSE  (Q8R3G9), TSN8_PONAB  (Q5R9S6), TSN9_DANRE  (Q6GMK6), 
TSN9_HUMAN  (O75954), TSN9_MOUSE  (Q8BJU2), TSN9_PIG    (Q06AA5), 
TSN9_SALSA  (B5X3I6), TSN9_SHEEP  (B3VSC2), TSN9_XENLA  (Q6DCQ3), 
TSN9_XENTR  (B0BM39), TSP17_CAEEL (Q11098)
» More

UniProtKB/Swiss-Prot
False negative sequences
43 sequences

CD151_BOVIN (Q3ZBH3), TET10_ARATH (F4I214), TET11_ARATH (Q9LPR6), 
TET12_ARATH (Q9FN51), TET13_ARATH (Q9SI56), TET14_ARATH (Q58G33), 
TET15_ARATH (Q1PDI1), TET16_ARATH (Q5BQ04), TET17_ARATH (Q58G35), 
TET18_ARATH (Q93XY5), TET19_ARATH (Q940P5), TET20_ARATH (Q9SVU4), 
TET2_ARATH  (Q9ZUN5), TET3_ARATH  (Q9M1E7), TET4_ARATH  (Q9LSS4), 
TET5_ARATH  (Q84WF6), TET6_ARATH  (Q9C7C1), TET9_ARATH  (Q9M0B7), 
TRN2_ARATH  (Q9FIQ5), TS31A_XENLA (Q5XHG6), TS31B_XENLA (Q7ZWW7), 
TSN10_MOUSE (Q8VCF5), TSN11_BOVIN (Q0VC33), TSN11_HUMAN (A1L157), 
TSN11_MOUSE (Q9D1D1), TSN11_RAT   (Q568Y5), TSN13_BOVIN (Q3ZBV0), 
TSN13_HUMAN (O95857), TSN13_MOUSE (Q9D8C2), TSN13_RAT   (Q5FVL6), 
TSN15_BOVIN (Q1JQA4), TSN15_HUMAN (O95858), TSN15_MOUSE (F7BWT7), 
TSN16_HUMAN (Q9UKR8), TSN31_BOVIN (Q32KP1), TSN31_DANRE (Q7ZUB3), 
TSN31_HUMAN (Q12999), TSN31_MOUSE (Q9CQ88), TSN31_PIG   (Q29257), 
TSN31_PONAB (Q5RAP8), TSN31_RAT   (Q5U1V9), TSN6_MOUSE  (O70401), 
TSP1_CAEEL  (P34285)
» More


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