Entry: PS00446

General information about the entry

Entry name [info] RNA_POL_D_30KD
Accession [info] PS00446
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00411

Name and characterization of the entry

Description [info] RNA polymerases D / 30 to 40 Kd subunits signature.
Pattern [info]
N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x-
[LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 43 in 43 different sequences
Number of true positive hits 43 in 43 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.76 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
43 sequences

CNJC_TETTH  (P16925), NRPB3_ARATH (Q39211), RPAC1_BOVIN (Q32L22), 
RPAC1_DICDI (Q54SN4), RPAC1_HUMAN (O15160), RPAC1_MOUSE (P52432), 
RPAC1_SCHPO (O94616), RPAC1_YEAST (P07703), RPB3_BOVIN  (Q3T0Q3), 
RPB3_HUMAN  (P19387), RPB3_MOUSE  (P97760), RPB3_SCHPO  (P37382), 
RPB3_YEAST  (P16370), RPD3B_ARATH (Q39212), RPOD_AERPE  (Q9YB53), 
RPOD_ARCFU  (O28002), RPOD_HALMA  (Q00813), RPOD_HALS3  (B0R4Y2), 
RPOD_HALSA  (Q9HQJ4), RPOD_METAC  (P0CG28), RPOD_METJA  (Q57648), 
RPOD_METKA  (Q8TVB8), RPOD_METMA  (Q8PV16), RPOD_METST  (Q2NFZ6), 
RPOD_METTH  (O26144), RPOD_PYRAB  (Q9V198), RPOD_PYRAE  (Q8ZYQ3), 
RPOD_PYRAR  (A4WNA4), RPOD_PYRCJ  (A3MXZ5), RPOD_PYRFU  (Q8U0E4), 
RPOD_PYRHO  (O59303), RPOD_PYRIL  (A1RSE3), RPOD_PYRNV  (B1YC30), 
RPOD_SULAC  (P39471), RPOD_SULIA  (C3N054), RPOD_SULIK  (C4KJ93), 
RPOD_SULIL  (C3MJP7), RPOD_SULIM  (C3MZ05), RPOD_SULIN  (C3NMQ0), 
RPOD_SULIY  (C3N8R8), RPOD_SULSO  (P95989), RPOD_SULTO  (Q96YW0), 
RPOD_THEKO  (Q5JJF4)
» More

UniProtKB/Swiss-Prot
False negative sequences
6 sequences

RPB3_DICDI  (Q54DH7), RPOD_METS3  (A5UN55), RPOD_NATPD  (Q3IQT6), 
RPOD_PICTO  (Q6KZP5), RPOD_THEAC  (Q9HJD9), RPOD_THEVO  (Q97B93)
» More

PDB
[Detailed view]
113 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4X67; 4X6A
» More

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