Entry: PS00446

General information about the entry
Entry name RNA_POL_D_30KD
Accession number PS00446
Entry type PATTERN
Date MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00411
Name and characterization of the entry
DescriptionRNA polymerases D / 30 to 40 Kd subunits signature.
Pattern N-[SGAT]-[LIVMF]-R-R-x(9)-[SAR]-x(3)-[VA]-x(4)-N-x-[STA]-x(3)-[DN]-E-x- [LIV]-[GSA]-x-R-[LI]-[GAS]-[LIVM](2)-[PV].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 43 hits in 43 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 43 hits in 43 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 87.76 %
Comments
  • Taxonomic range: Archaea, Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CNJC_TETTH  (P16925), RPAC1_BOVIN (Q32L22), RPAC1_DICDI (Q54SN4), 
RPAC1_HUMAN (O15160), RPAC1_MOUSE (P52432), RPAC1_SCHPO (O94616), 
RPAC1_YEAST (P07703), RPB3A_ARATH (Q39211), RPB3B_ARATH (Q39212), 
RPB3_BOVIN  (Q3T0Q3), RPB3_HUMAN  (P19387), RPB3_MOUSE  (P97760), 
RPB3_SCHPO  (P37382), RPB3_YEAST  (P16370), RPOD_AERPE  (Q9YB53), 
RPOD_ARCFU  (O28002), RPOD_HALMA  (Q00813), RPOD_HALS3  (B0R4Y2), 
RPOD_HALSA  (Q9HQJ4), RPOD_METAC  (P0CG28), RPOD_METJA  (Q57648), 
RPOD_METKA  (Q8TVB8), RPOD_METMA  (Q8PV16), RPOD_METST  (Q2NFZ6), 
RPOD_METTH  (O26144), RPOD_PYRAB  (Q9V198), RPOD_PYRAE  (Q8ZYQ3), 
RPOD_PYRAR  (A4WNA4), RPOD_PYRCJ  (A3MXZ5), RPOD_PYRFU  (Q8U0E4), 
RPOD_PYRHO  (O59303), RPOD_PYRIL  (A1RSE3), RPOD_PYRKO  (Q5JJF4), 
RPOD_PYRNV  (B1YC30), RPOD_SULAC  (P39471), RPOD_SULIA  (C3N054), 
RPOD_SULIK  (C4KJ93), RPOD_SULIL  (C3MJP7), RPOD_SULIM  (C3MZ05), 
RPOD_SULIN  (C3NMQ0), RPOD_SULIY  (C3N8R8), RPOD_SULSO  (P95989), 
RPOD_SULTO  (Q96YW0)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RPB3_DICDI  (Q54DH7), RPOD_METS3  (A5UN55), RPOD_NATPD  (Q3IQT6), 
RPOD_PICTO  (Q6KZP5), RPOD_THEAC  (Q9HJD9), RPOD_THEVO  (Q97B93)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS;

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