Due to scheduled maintenance work, this service may not be available on Monday January 22nd between 08.00 am and 9.00 am CEST.
To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00446

General information about the entry

Entry name [info] RNA_POL_D_30KD
Accession [info] PS00446
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED; 01-DEC-2004 DATA UPDATE; 20-DEC-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00411

Name and characterization of the entry

Description [info] RNA polymerases D / 30 to 40 Kd subunits signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_12 which contains 556'388 sequence entries.

Total number of hits 43 in 43 different sequences
Number of true positive hits 43 in 43 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 6
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.76 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

True positive sequences
43 sequences

CNJC_TETTH  (P16925    ), NRPB3_ARATH (Q39211    ), RPAC1_BOVIN (Q32L22    ), 
RPAC1_DICDI (Q54SN4    ), RPAC1_HUMAN (O15160    ), RPAC1_MOUSE (P52432    ), 
RPAC1_SCHPO (O94616    ), RPAC1_YEAST (P07703    ), RPB3_BOVIN  (Q3T0Q3    ), 
RPB3_HUMAN  (P19387    ), RPB3_MOUSE  (P97760    ), RPB3_SCHPO  (P37382    ), 
RPB3_YEAST  (P16370    ), RPD3B_ARATH (Q39212    ), RPOD_AERPE  (Q9YB53    ), 
RPOD_ARCFU  (O28002    ), RPOD_HALMA  (Q00813    ), RPOD_HALS3  (B0R4Y2    ), 
RPOD_HALSA  (Q9HQJ4    ), RPOD_METAC  (P0CG28    ), RPOD_METJA  (Q57648    ), 
RPOD_METKA  (Q8TVB8    ), RPOD_METMA  (Q8PV16    ), RPOD_METST  (Q2NFZ6    ), 
RPOD_METTH  (O26144    ), RPOD_PYRAB  (Q9V198    ), RPOD_PYRAE  (Q8ZYQ3    ), 
RPOD_PYRAR  (A4WNA4    ), RPOD_PYRCJ  (A3MXZ5    ), RPOD_PYRFU  (Q8U0E4    ), 
RPOD_PYRHO  (O59303    ), RPOD_PYRIL  (A1RSE3    ), RPOD_PYRNV  (B1YC30    ), 
RPOD_SULAC  (P39471    ), RPOD_SULIA  (C3N054    ), RPOD_SULIK  (C4KJ93    ), 
RPOD_SULIL  (C3MJP7    ), RPOD_SULIM  (C3MZ05    ), RPOD_SULIN  (C3NMQ0    ), 
RPOD_SULIY  (C3N8R8    ), RPOD_SULSO  (P95989    ), RPOD_SULTO  (Q96YW0    ), 
» more

False negative sequences
6 sequences

RPB3_DICDI  (Q54DH7    ), RPOD_METS3  (A5UN55    ), RPOD_NATPD  (Q3IQT6    ), 
RPOD_PICTO  (Q6KZP5    ), RPOD_THEAC  (Q9HJD9    ), RPOD_THEVO  (Q97B93    )
» more

[Detailed view]
159 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1R5U; 1R9S; 1R9T; 1SFO; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2PA8; 2PMZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HKZ; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3QT1; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4QIW; 4QJV; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FJ8; 5FJ9; 5FJA; 5FLM; 5FMF; 5FYW; 5FZ5; 5G5L; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD; 5LMX; 5M3F; 5M3M; 5M5W; 5M5X; 5M5Y; 5M64; 5N5Y; 5N5Z; 5N60; 5N61; 5OA1; 5OIK; 5OT2; 5SVA; 5U0S; 5U5Q; 5W5Y; 5W64; 5W65; 5W66
» more

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission