Entry: PS00466

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General information about the entry

Entry name [info] ZF_TFIIS_1
Accession [info] PS00466
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); APR-2006 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00383

Name and characterization of the entry

Description [info] Zinc finger TFIIS-type signature.
Pattern [info]
C-x(2)-C-x(9)-[LIVMQSART]-[QH]-[STQLMI]-[RA]-[SACR]-x-[DE]-[DET]-
[PGSEAM]-x(6)-C-x(2,5)-C-x(3)-[FWE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 51 in 51 different sequences
Number of true positive hits 51 in 51 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 87.93 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 1
Site [info] zinc at position 3
Site [info] zinc at position 15
Site [info] zinc at position 17
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
51 sequences

081R_FRG3G  (Q6GZP4), RP30_VACCC  (P21082), RP30_VACCW  (P21603), 
RP30_VAR67  (P33796), RPA12_BOVIN (Q1RMP0), RPA12_HUMAN (Q9P1U0), 
RPA12_MACMU (Q5TM50), RPA12_MOUSE (Q791N7), RPA12_PANTR (Q1XHV8), 
RPA12_RAT   (Q6MFY5), RPA12_SCHPO (O94703), RPA12_YEAST (P32529), 
RPB9_ASHGO  (Q755B3), RPB9_BOVIN  (Q32P73), RPB9_CANGA  (Q6FS48), 
RPB9_DROME  (P36958), RPB9_HUMAN  (P36954), RPB9_MOUSE  (P60898), 
RPB9_PIG    (P60899), RPB9_SCHPO  (O74635), RPB9_YEAST  (P27999), 
RPC10_HUMAN (Q9Y2Y1), RPC10_MOUSE (Q9CQZ7), RPO5_FOWPN  (Q9J5C0), 
RPO5_VACCA  (O57187), RPOM_ARCFU  (O29033), RPOM_METJA  (Q58548), 
RPOM_METTH  (O27369), RPOM_SULAC  (Q07271), RPOM_THECE  (Q56254), 
TCEA1_BOVIN (Q29RL9), TCEA1_DICDI (Q54YG9), TCEA1_HUMAN (P23193), 
TCEA1_MOUSE (P10711), TCEA1_RAT   (Q4KLL0), TCEA2_BOVIN (Q148K0), 
TCEA2_HUMAN (Q15560), TCEA2_MOUSE (Q9QVN7), TCEA2_RAT   (Q63799), 
TCEA3_BOVIN (Q2KI09), TCEA3_HUMAN (O75764), TCEA3_MOUSE (P23881), 
TFS2_ASFB7  (P27948), TFS2_ASFK5  (P0C8F5), TFS2_ASFM2  (P0C8F6), 
TFS2_ASFP4  (P0C8F7), TFS2_ASFWA  (P0C8F8), TFS2_CAEEL  (P52652), 
TFS2_DROME  (P20232), TFS2_SCHPO  (P49373), TFS2_YEAST  (P07273)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

RPB9_ENCCU  (Q8SQU1), RPC10_BOVIN (Q2M2S7), RPC10_SCHPO (O13896), 
RPC10_YEAST (Q04307), TFS2_MIMIV  (Q5UQS8), VF349_IIV3  (Q197A5), 
VF349_IIV6  (Q91FH5)
» More

PDB
[Detailed view]
104 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J
» More

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