Entry: PS00466

General information about the entry

Entry name [info] ZF_TFIIS_1
Accession [info] PS00466
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); APR-2006 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00383

Name and characterization of the entry

Description [info] Zinc finger TFIIS-type signature.
Pattern [info]
C-x(2)-C-x(9)-[LIVMQSART]-[QH]-[STQLMI]-[RA]-[SACR]-x-[DE]-[DET]-
[PGSEAM]-x(6)-C-x(2,5)-C-x(3)-[FWE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 52 in 52 different sequences
Number of true positive hits 52 in 52 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.14 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 1
Site [info] zinc at position 3
Site [info] zinc at position 15
Site [info] zinc at position 17
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
52 sequences

081R_FRG3G  (Q6GZP4), RDO2_ARATH  (Q9ZVH8), RP30_VACCC  (P21082), 
RP30_VACCW  (P21603), RP30_VAR67  (P33796), RPA12_BOVIN (Q1RMP0), 
RPA12_HUMAN (Q9P1U0), RPA12_MACMU (Q5TM50), RPA12_MOUSE (Q791N7), 
RPA12_PANTR (Q1XHV8), RPA12_RAT   (Q6MFY5), RPA12_SCHPO (O94703), 
RPA12_YEAST (P32529), RPB9_ASHGO  (Q755B3), RPB9_BOVIN  (Q32P73), 
RPB9_CANGA  (Q6FS48), RPB9_DROME  (P36958), RPB9_HUMAN  (P36954), 
RPB9_MOUSE  (P60898), RPB9_PIG    (P60899), RPB9_SCHPO  (O74635), 
RPB9_YEAST  (P27999), RPC10_HUMAN (Q9Y2Y1), RPC10_MOUSE (Q9CQZ7), 
RPO5_FOWPN  (Q9J5C0), RPO5_VACCA  (O57187), RPOM_ARCFU  (O29033), 
RPOM_METJA  (Q58548), RPOM_METTH  (O27369), RPOM_SULAC  (Q07271), 
RPOM_THECE  (Q56254), TCEA1_BOVIN (Q29RL9), TCEA1_DICDI (Q54YG9), 
TCEA1_HUMAN (P23193), TCEA1_MOUSE (P10711), TCEA1_RAT   (Q4KLL0), 
TCEA2_BOVIN (Q148K0), TCEA2_HUMAN (Q15560), TCEA2_MOUSE (Q9QVN7), 
TCEA2_RAT   (Q63799), TCEA3_BOVIN (Q2KI09), TCEA3_HUMAN (O75764), 
TCEA3_MOUSE (P23881), TFS2_ASFB7  (P27948), TFS2_ASFK5  (P0C8F5), 
TFS2_ASFM2  (P0C8F6), TFS2_ASFP4  (P0C8F7), TFS2_ASFWA  (P0C8F8), 
TFS2_CAEEL  (P52652), TFS2_DROME  (P20232), TFS2_SCHPO  (P49373), 
TFS2_YEAST  (P07273)
» More

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

RPB9_ENCCU  (Q8SQU1), RPC10_BOVIN (Q2M2S7), RPC10_SCHPO (O13896), 
RPC10_YEAST (Q04307), TFS2_MIMIV  (Q5UQS8), VF349_IIV3  (Q197A5), 
VF349_IIV6  (Q91FH5)
» More

PDB
[Detailed view]
109 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4V1M; 4V1N; 4V1O; 4X67; 4X6A
» More

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