Entry: PS00466

General information about the entry

Entry name [info] ZF_TFIIS_1
Accession [info] PS00466
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); APR-2006 (DATA UPDATE); MAR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00383

Name and characterization of the entry

Description [info] Zinc finger TFIIS-type signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_05 which contains 548'454 sequence entries.

Total number of hits 52 in 52 different sequences
Number of true positive hits 52 in 52 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.14 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 1
Site [info] zinc at position 3
Site [info] zinc at position 15
Site [info] zinc at position 17
Version [info] 2

Cross-references [info]

True positive sequences
52 sequences

081R_FRG3G  (Q6GZP4), RDO2_ARATH  (Q9ZVH8), RP30_VACCC  (P21082), 
RP30_VACCW  (P21603), RP30_VAR67  (P33796), RPA12_BOVIN (Q1RMP0), 
RPA12_HUMAN (Q9P1U0), RPA12_MACMU (Q5TM50), RPA12_MOUSE (Q791N7), 
RPA12_PANTR (Q1XHV8), RPA12_RAT   (Q6MFY5), RPA12_SCHPO (O94703), 
RPA12_YEAST (P32529), RPB9_ASHGO  (Q755B3), RPB9_BOVIN  (Q32P73), 
RPB9_CANGA  (Q6FS48), RPB9_DROME  (P36958), RPB9_HUMAN  (P36954), 
RPB9_MOUSE  (P60898), RPB9_PIG    (P60899), RPB9_SCHPO  (O74635), 
RPB9_YEAST  (P27999), RPC10_HUMAN (Q9Y2Y1), RPC10_MOUSE (Q9CQZ7), 
RPO5_FOWPN  (Q9J5C0), RPO5_VACCA  (O57187), RPOM_ARCFU  (O29033), 
RPOM_METJA  (Q58548), RPOM_METTH  (O27369), RPOM_SULAC  (Q07271), 
TCEA1_HUMAN (P23193), TCEA1_MOUSE (P10711), TCEA1_RAT   (Q4KLL0), 
TCEA2_RAT   (Q63799), TCEA3_BOVIN (Q2KI09), TCEA3_HUMAN (O75764), 
TCEA3_MOUSE (P23881), TFS2_ASFB7  (P27948), TFS2_ASFK5  (P0C8F5), 
TFS2_ASFM2  (P0C8F6), TFS2_ASFP4  (P0C8F7), TFS2_ASFWA  (P0C8F8), 
TFS2_CAEEL  (P52652), TFS2_DROME  (P20232), TFS2_SCHPO  (P49373), 
TFS2_YEAST  (P07273)
» More

False negative sequences
7 sequences

RPB9_ENCCU  (Q8SQU1), RPC10_BOVIN (Q2M2S7), RPC10_SCHPO (O13896), 
RPC10_YEAST (Q04307), TFS2_MIMIV  (Q5UQS8), VF349_IIV3  (Q197A5), 
VF349_IIV6  (Q91FH5)
» More

[Detailed view]
109 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4V1M; 4V1N; 4V1O; 4X67; 4X6A
» More

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