Entry: PS00466

General information about the entry
Entry name ZF_TFIIS_1
Accession number PS00466
Entry type PATTERN
Date MAY-1991 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00383
Name and characterization of the entry
DescriptionZinc finger TFIIS-type signature.
Pattern C-x(2)-C-x(9)-[LIVMQSART]-[QH]-[STQLMI]-[RA]-[SACR]-x-[DE]-[DET]- [PGSEAM]-x(6)-C-x(2,5)-C-x(3)-[FWE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 51 hits in 51 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 51 hits in 51 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 7
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 87.93 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,zinc
  • `Interesting' site in the pattern: 3,zinc
  • `Interesting' site in the pattern: 15,zinc
  • `Interesting' site in the pattern: 17,zinc
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
081R_FRG3G  (Q6GZP4), RP30_VACCC  (P21082), RP30_VACCW  (P21603), 
RP30_VAR67  (P33796), RPA12_BOVIN (Q1RMP0), RPA12_HUMAN (Q9P1U0), 
RPA12_MACMU (Q5TM50), RPA12_MOUSE (Q791N7), RPA12_PANTR (Q1XHV8), 
RPA12_RAT   (Q6MFY5), RPA12_SCHPO (O94703), RPA12_YEAST (P32529), 
RPB9_ASHGO  (Q755B3), RPB9_BOVIN  (Q32P73), RPB9_CANGA  (Q6FS48), 
RPB9_DROME  (P36958), RPB9_HUMAN  (P36954), RPB9_MOUSE  (P60898), 
RPB9_PIG    (P60899), RPB9_SCHPO  (O74635), RPB9_YEAST  (P27999), 
RPC10_HUMAN (Q9Y2Y1), RPC10_MOUSE (Q9CQZ7), RPO5_FOWPN  (Q9J5C0), 
RPO5_VACCA  (O57187), RPOM_ARCFU  (O29033), RPOM_METJA  (Q58548), 
RPOM_METTH  (O27369), RPOM_SULAC  (Q07271), RPOM_THECE  (Q56254), 
TCEA1_BOVIN (Q29RL9), TCEA1_DICDI (Q54YG9), TCEA1_HUMAN (P23193), 
TCEA1_MOUSE (P10711), TCEA1_RAT   (Q4KLL0), TCEA2_BOVIN (Q148K0), 
TCEA2_HUMAN (Q15560), TCEA2_MOUSE (Q9QVN7), TCEA2_RAT   (Q63799), 
TCEA3_BOVIN (Q2KI09), TCEA3_HUMAN (O75764), TCEA3_MOUSE (P23881), 
TFS2_ASFB7  (P27948), TFS2_ASFK5  (P0C8F5), TFS2_ASFM2  (P0C8F6), 
TFS2_ASFP4  (P0C8F7), TFS2_ASFWA  (P0C8F8), TFS2_CAEEL  (P52652), 
TFS2_DROME  (P20232), TFS2_SCHPO  (P49373), TFS2_YEAST  (P07273)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
RPB9_ENCCU  (Q8SQU1), RPC10_BOVIN (Q2M2S7), RPC10_SCHPO (O13896), 
RPC10_YEAST (Q04307), TFS2_MIMIV  (Q5UQS8), VF349_IIV3  (Q197A5), 
VF349_IIV6  (Q91FH5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS;

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