Entry: PS00466

General information about the entry

Entry name [info] ZF_TFIIS_1
Accession [info] PS00466
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); APR-2006 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00383

Name and characterization of the entry

Description [info] Zinc finger TFIIS-type signature.
Pattern [info]
C-x(2)-C-x(9)-[LIVMQSART]-[QH]-[STQLMI]-[RA]-[SACR]-x-[DE]-[DET]-
[PGSEAM]-x(6)-C-x(2,5)-C-x(3)-[FWE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 53 in 53 different sequences
Number of true positive hits 53 in 53 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 7
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 88.33 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Eukaryotic viruses
Maximum number of repetitions [info] 1
Site [info] zinc at position 1
Site [info] zinc at position 3
Site [info] zinc at position 15
Site [info] zinc at position 17
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
53 sequences

081R_FRG3G  (Q6GZP4    ), RDO2_ARATH  (Q9ZVH8    ), RP30_VACCC  (P21082    ), 
RP30_VACCW  (P21603    ), RP30_VAR67  (P33796    ), RPA12_BOVIN (Q1RMP0    ), 
RPA12_HUMAN (Q9P1U0    ), RPA12_MACMU (Q5TM50    ), RPA12_MOUSE (Q791N7    ), 
RPA12_PANTR (Q1XHV8    ), RPA12_RAT   (Q6MFY5    ), RPA12_SCHPO (O94703    ), 
RPA12_YEAST (P32529    ), RPB9_ASHGO  (Q755B3    ), RPB9_BOVIN  (Q32P73    ), 
RPB9_CANGA  (Q6FS48    ), RPB9_DROME  (P36958    ), RPB9_HUMAN  (P36954    ), 
RPB9_MOUSE  (P60898    ), RPB9_PIG    (P60899    ), RPB9_SCHPO  (O74635    ), 
RPB9_YEAST  (P27999    ), RPC10_HUMAN (Q9Y2Y1    ), RPC10_MOUSE (Q9CQZ7    ), 
RPO5_FOWPN  (Q9J5C0    ), RPO5_VACCA  (O57187    ), TCEA1_BOVIN (Q29RL9    ), 
TCEA1_DICDI (Q54YG9    ), TCEA1_HUMAN (P23193    ), TCEA1_MOUSE (P10711    ), 
TCEA1_RAT   (Q4KLL0    ), TCEA2_BOVIN (Q148K0    ), TCEA2_HUMAN (Q15560    ), 
TCEA2_MOUSE (Q9QVN7    ), TCEA2_RAT   (Q63799    ), TCEA3_BOVIN (Q2KI09    ), 
TCEA3_HUMAN (O75764    ), TCEA3_MOUSE (P23881    ), TFS2_ASFB7  (P27948    ), 
TFS2_ASFK5  (P0C8F5    ), TFS2_ASFM2  (P0C8F6    ), TFS2_ASFP4  (P0C8F7    ), 
TFS2_ASFWA  (P0C8F8    ), TFS2_CAEEL  (P52652    ), TFS2_DROME  (P20232    ), 
TFS2_SCHPO  (P49373    ), TFS2_YEAST  (P07273    ), TFS_ARCFU   (O29033    ), 
TFS_METJA   (Q58548    ), TFS_METTH   (O27369    ), TFS_METTL   (Q9P9I8    ), 
TFS_SULAC   (Q07271    ), TFS_THECE   (Q56254    )
» more

UniProtKB/Swiss-Prot
False negative sequences
7 sequences

RPB9_ENCCU  (Q8SQU1    ), RPC10_BOVIN (Q2M2S7    ), RPC10_SCHPO (O13896    ), 
RPC10_YEAST (Q04307    ), TFS2_MIMIV  (Q5UQS8    ), VF349_IIV3  (Q197A5    ), 
VF349_IIV6  (Q91FH5    )
» more

PDB
[Detailed view]
130 PDB

1I3Q; 1I50; 1I6H; 1K83; 1NIK; 1NT9; 1PQV; 1QYP; 1R5U; 1R9S; 1R9T; 1SFO; 1TFI; 1TWA; 1TWC; 1TWF; 1TWG; 1TWH; 1WCM; 1Y1V; 1Y1W; 1Y1Y; 1Y77; 2B63; 2B8K; 2E2H; 2E2I; 2E2J; 2JA5; 2JA6; 2JA7; 2JA8; 2NVQ; 2NVT; 2NVX; 2NVY; 2NVZ; 2R7Z; 2R92; 2R93; 2VUM; 2YU9; 3CQZ; 3FKI; 3GTG; 3GTJ; 3GTK; 3GTL; 3GTM; 3GTO; 3GTP; 3GTQ; 3H0G; 3H3V; 3HOU; 3HOV; 3HOW; 3HOX; 3HOY; 3HOZ; 3I4M; 3I4N; 3J0K; 3J1N; 3K1F; 3K7A; 3M3Y; 3M4O; 3PO2; 3PO3; 3RZD; 3RZO; 3S14; 3S15; 3S16; 3S17; 3S1M; 3S1N; 3S1Q; 3S1R; 3S2D; 3S2H; 4A3B; 4A3C; 4A3D; 4A3E; 4A3F; 4A3G; 4A3I; 4A3J; 4A3K; 4A3L; 4A3M; 4A93; 4BBR; 4BBS; 4BXX; 4BXZ; 4BY1; 4BY7; 4C2M; 4C3H; 4C3I; 4C3J; 4V1M; 4V1N; 4V1O; 4X67; 4X6A; 4Y52; 4Y7N; 5C3E; 5C44; 5C4A; 5C4J; 5C4X; 5FLM; 5FMF; 5FYW; 5FZ5; 5IP7; 5IP9; 5IY6; 5IY7; 5IY8; 5IY9; 5IYA; 5IYB; 5IYC; 5IYD
» more

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