Entry: PS00470

General information about the entry

Entry name [info] IDH_IMDH
Accession [info] PS00470
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00389

Name and characterization of the entry

Description [info] Isocitrate and isopropylmalate dehydrogenases signature.
Pattern [info]
[NSK]-[LIMYTV]-[FYDNH]-[GEA]-[DNGSTY]-[IMVYL]-x-[STGDN]-[DN]-x(1,2)-
[SGAP]-x(3,4)-[GE]-[STG]-[LIVMPA]-[GA]-[LIVMF].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 403 in 403 different sequences
Number of true positive hits 403 in 403 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 9
Number of 'partial' sequences 7
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.82 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
403 sequences

AKSF_METJA  (Q58991    ), DLPA_LEGPH  (Q48806    ), DMLA_ECOLI  (P76251    ), 
HICD_PYRHO  (O59394    ), ICDHC_ARATH (Q9SRZ6    ), ICDHP_ARATH (Q8LPJ5    ), 
ICDHX_ARATH (Q9SLK0    ), IDH1_AJECA  (O13302    ), IDH1_CANTR  (O13285    ), 
IDH1_COLMA  (P41560    ), IDH1_KLULA  (O94229    ), IDH1_SCHPO  (O13696    ), 
IDH1_YEAST  (P28834    ), IDH2_CANTR  (O13294    ), IDH2_KLULA  (O94230    ), 
IDH2_SCHPO  (Q9USP8    ), IDH2_YEAST  (P28241    ), IDH3A_BOVIN (P41563    ), 
IDH3A_CAEEL (Q93714    ), IDH3A_DROME (Q9VWH4    ), IDH3A_HUMAN (P50213    ), 
IDH3A_MACFA (Q28480    ), IDH3A_MOUSE (Q9D6R2    ), IDH3A_PONAB (Q5R678    ), 
IDH3A_RAT   (Q99NA5    ), IDH3B_BOVIN (O77784    ), IDH3B_CAEEL (Q93353    ), 
IDH3B_HUMAN (O43837    ), IDH3B_MACFA (Q28479    ), IDH3B_PONAB (Q5RBT4    ), 
IDH3B_RAT   (Q68FX0    ), IDH3G_BOVIN (Q58CP0    ), IDH3G_HUMAN (P51553    ), 
IDH3G_MACFA (P41564    ), IDH5_ARATH  (Q945K7    ), IDH6_ARATH  (Q8LG77    ), 
IDHA_DICDI  (Q55BI2    ), IDHB_DICDI  (Q54B68    ), IDHC_BOVIN  (Q9XSG3    ), 
IDHC_DICDI  (Q75JR3    ), IDHC_HUMAN  (O75874    ), IDHC_MICME  (Q9Z2K9    ), 
IDHC_MICOH  (Q9Z2K8    ), IDHC_MOUSE  (O88844    ), IDHC_PONAB  (Q5R9C5    ), 
IDHC_RAT    (P41562    ), IDHC_SHEEP  (Q6XUZ5    ), IDHC_SOLTU  (P50217    ), 
IDHC_SOYBN  (Q06197    ), IDHC_TOBAC  (P50218    ), IDHC_YEAST  (P41939    ), 
IDHG1_MOUSE (P70404    ), IDHG1_RAT   (P41565    ), IDHH_YEAST  (P53982    ), 
IDHP_ASPNG  (P79089    ), IDHP_BOVIN  (Q04467    ), IDHP_DICDI  (Q75JR2    ), 
IDHP_HUMAN  (P48735    ), IDHP_MACFA  (Q4R502    ), IDHP_MEDSA  (Q40345    ), 
IDHP_MOUSE  (P54071    ), IDHP_PIG    (P33198    ), IDHP_RAT    (P56574    ), 
IDHP_SCHPO  (O14254    ), IDHP_YEAST  (P21954    ), IDH_AQUAE   (O67480    ), 
IDH_ARCFU   (O29610    ), IDH_BACSU   (P39126    ), IDH_CALNO   (P96318    ), 
IDH_COXBU   (Q9ZH99    ), IDH_ECOLI   (P08200    ), IDH_HALVD   (D4GU92    ), 
IDH_HELPJ   (Q9ZN36    ), IDH_HELPY   (P56063    ), IDH_MYCBO   (P65098    ), 
IDH_MYCTO   (P9WKL0    ), IDH_MYCTU   (P9WKL1    ), IDH_NOSS1   (P50214    ), 
IDH_PSEAB   (Q02NB5    ), IDH_RICBR   (Q1RJU4    ), IDH_RICCN   (Q92IR7    ), 
IDH_RICFE   (Q4UKR1    ), IDH_RICPR   (Q9ZDR0    ), IDH_RICTY   (Q68XA5    ), 
IDH_SPHYA   (P50215    ), IDH_STAAC   (Q5HF79    ), IDH_STAAM   (P65099    ), 
IDH_STAAN   (P99167    ), IDH_STAAR   (Q6GG12    ), IDH_STAAS   (Q6G8N2    ), 
IDH_STAAW   (Q8NW61    ), IDH_STAEQ   (Q5HNL1    ), IDH_STAES   (Q8CNX4    ), 
IDH_STRMU   (Q59940    ), IDH_STRSL   (Q59985    ), IDH_SYNY3   (P80046    ), 
IDH_THET8   (P33197    ), LEU31_ARATH (Q9SA14    ), LEU31_BORBR (Q7WNM3    ), 
LEU31_BRADU (Q89XA0    ), LEU31_DECAR (Q47HR1    ), LEU32_ARATH (P93832    ), 
LEU32_BORBR (Q7WKH4    ), LEU32_BRADU (Q89X19    ), LEU32_DECAR (Q479H7    ), 
LEU33_ARATH (Q9FMT1    ), LEU3A_ASPNG (P87256    ), LEU3B_ASPNG (P87257    ), 
LEU3_ACIAD  (Q6FEV6    ), LEU3_ACIFR  (Q56268    ), LEU3_ACRCH  (Q12545    ), 
LEU3_AGRFC  (P24404    ), LEU3_ANADE  (Q2IJK7    ), LEU3_ANAVT  (Q3M8T9    ), 
LEU3_AQUAE  (O66607    ), LEU3_ARCFU  (O29627    ), LEU3_AROAE  (Q5P1J6    ), 
LEU3_ARTPT  (Q00412    ), LEU3_ASHGO  (O60027    ), LEU3_AZOVI  (P96197    ), 
LEU3_BACAN  (Q81T67    ), LEU3_BACC1  (Q73B99    ), LEU3_BACCA  (P05644    ), 
LEU3_BACCO  (P12010    ), LEU3_BACCR  (Q81G11    ), LEU3_BACCZ  (Q63DX7    ), 
LEU3_BACFN  (Q5LAB4    ), LEU3_BACFR  (P54354    ), LEU3_BACHD  (Q9K8E9    ), 
LEU3_BACHK  (Q6HLF2    ), LEU3_BACLD  (Q65GI9    ), LEU3_BACMD  (P41019    ), 
LEU3_BACSK  (Q5WEN4    ), LEU3_BACSU  (P05645    ), LEU3_BACTN  (Q8A6M0    ), 
LEU3_BEUC1  (C5C2I9    ), LEU3_BLAAD  (Q8NKB8    ), LEU3_BLOFL  (Q7VQJ7    ), 
LEU3_BLOPB  (Q493R1    ), LEU3_BORA1  (Q2KYL5    ), LEU3_BORPA  (Q7W929    ), 
LEU3_BORPE  (Q7VY73    ), LEU3_BRANA  (P29102    ), LEU3_BRUA2  (Q2YL58    ), 
LEU3_BRUAB  (Q579B1    ), LEU3_BRUME  (Q8YCX4    ), LEU3_BRUSU  (Q8FVF3    ), 
LEU3_BUCAI  (P56933    ), LEU3_BUCAP  (O85064    ), LEU3_BUCBP  (P59515    ), 
LEU3_BUCCC  (Q5WPZ9    ), LEU3_BUCDN  (O85071    ), LEU3_BUCML  (Q9EVG3    ), 
LEU3_BUCPS  (P59027    ), LEU3_BUCRP  (P48572    ), LEU3_BUCTS  (O31292    ), 
LEU3_BUCUA  (Q9EVG6    ), LEU3_BUCUD  (Q9EVE1    ), LEU3_BUCUE  (Q9EVH5    ), 
LEU3_BUCUH  (Q9EVH8    ), LEU3_BUCUL  (Q9AQC8    ), LEU3_BUCUM  (Q9EVG9    ), 
LEU3_BUCUN  (Q9EVI7    ), LEU3_BUCUO  (Q9EVI1    ), LEU3_BUCUS  (Q9EVI4    ), 
LEU3_BURL3  (Q393X4    ), LEU3_BURM1  (Q845W3    ), LEU3_BURMA  (Q62AI9    ), 
LEU3_BURP1  (Q3JKG9    ), LEU3_BURPS  (Q63JL2    ), LEU3_BURTA  (Q2T7H6    ), 
LEU3_CALS4  (Q8RDK0    ), LEU3_CAMJE  (Q9PLW0    ), LEU3_CAMJR  (Q5HS77    ), 
LEU3_CANAX  (P87186    ), LEU3_CANBO  (Q01987    ), LEU3_CANGA  (O14429    ), 
LEU3_CANHU  (Q6PY58    ), LEU3_CANMA  (P07139    ), LEU3_CANRU  (Q9HDQ5    ), 
LEU3_CARHZ  (Q3AEQ2    ), LEU3_CAUCR  (Q9ABN3    ), LEU3_CHLCH  (Q3APC4    ), 
LEU3_CHLL7  (Q3B595    ), LEU3_CHLTE  (P59028    ), LEU3_CHRSD  (Q1QUR0    ), 
LEU3_CHRVO  (Q7NUC2    ), LEU3_CLAM3  (A5CPZ4    ), LEU3_CLAMS  (B0RIP4    ), 
LEU3_CLOAB  (Q97EE2    ), LEU3_CLOPA  (P31958    ), LEU3_COLP3  (Q47WG3    ), 
LEU3_CORA7  (C3PFX5    ), LEU3_CORDI  (Q6NHM7    ), LEU3_COREF  (Q8FPV5    ), 
LEU3_CORGB  (A4QDP9    ), LEU3_CORGL  (P94631    ), LEU3_CORJK  (Q4JUQ0    ), 
LEU3_CORK4  (C4LJH3    ), LEU3_CORU7  (B1VG35    ), LEU3_CUPMC  (Q1LKH7    ), 
LEU3_CUPPJ  (Q46YW0    ), LEU3_CYBJA  (P08791    ), LEU3_DEBHA  (Q6B458    ), 
LEU3_DEHM1  (Q3Z896    ), LEU3_DEHMC  (Q3ZXI7    ), LEU3_DEIGD  (Q1IZK2    ), 
LEU3_DEIRA  (Q9RTH9    ), LEU3_DESAG  (Q30WD0    ), LEU3_DESHY  (Q24XT2    ), 
LEU3_DESPS  (Q6ANR1    ), LEU3_DESVH  (Q726X1    ), LEU3_ECO57  (Q8X9Z9    ), 
LEU3_ECOL6  (Q8FL76    ), LEU3_ECOLI  (P30125    ), LEU3_ECOUT  (Q1RGC4    ), 
LEU3_FRASC  (Q2J6V8    ), LEU3_FRASN  (A8L554    ), LEU3_GEOKA  (Q5KWJ4    ), 
LEU3_GEOMG  (Q39Y29    ), LEU3_GEOSL  (Q748X2    ), LEU3_GLOVI  (Q7NFH4    ), 
LEU3_GLUOX  (Q5FUG5    ), LEU3_HAEI8  (Q4QLS3    ), LEU3_HAEIN  (P43860    ), 
LEU3_HAHCH  (Q2SJD6    ), LEU3_HELHP  (Q7VH33    ), LEU3_JANSC  (Q28W67    ), 
LEU3_KLULA  (P23390    ), LEU3_KLUMA  (P41766    ), LEU3_KODOH  (P41926    ), 
LEU3_LACLA  (Q02143    ), LEU3_LEIXX  (Q6AEP6    ), LEU3_LEPIC  (Q72RH7    ), 
LEU3_LEPIN  (P24015    ), LEU3_LISIN  (Q92A27    ), LEU3_LISMF  (Q71Y34    ), 
LEU3_LISMO  (Q8Y5R8    ), LEU3_MAGSA  (Q2VZV2    ), LEU3_MANSM  (Q65V05    ), 
LEU3_METCA  (Q606F4    ), LEU3_METJA  (Q58130    ), LEU3_METTH  (O27441    ), 
LEU3_MOOTA  (Q2RGA0    ), LEU3_MYCA1  (A0QJC2    ), LEU3_MYCBO  (P94929    ), 
LEU3_MYCBP  (A1KMY9    ), LEU3_MYCBT  (C1AGB0    ), LEU3_MYCGI  (A4TE12    ), 
LEU3_MYCLB  (B8ZS15    ), LEU3_MYCLE  (O33117    ), LEU3_MYCMM  (B2HIH1    ), 
LEU3_MYCPA  (Q73VI1    ), LEU3_MYCSJ  (A3PXQ2    ), LEU3_MYCSK  (A1UE98    ), 
LEU3_MYCSS  (Q1BAR4    ), LEU3_MYCTA  (A5U706    ), LEU3_MYCTO  (P9WKK8    ), 
LEU3_MYCTU  (P9WKK9    ), LEU3_MYCUA  (A0PPY6    ), LEU3_MYCVP  (A1T6Z4    ), 
LEU3_NEIG1  (Q5F8T6    ), LEU3_NEILA  (P50180    ), LEU3_NEIMA  (Q9JU79    ), 
LEU3_NEIMB  (Q9JZI9    ), LEU3_NEUCR  (P34738    ), LEU3_NITEU  (Q82WI6    ), 
LEU3_NITMU  (Q2Y7Q8    ), LEU3_NITOC  (Q3JCC4    ), LEU3_NITWN  (Q3SNU3    ), 
LEU3_NOCFA  (Q5YRX2    ), LEU3_NOSS1  (Q8YXA2    ), LEU3_NOVAD  (Q2G4X5    ), 
LEU3_OCEIH  (Q8EN68    ), LEU3_PASMU  (Q9CJN6    ), LEU3_PECAS  (Q6D0G7    ), 
LEU3_PELCD  (Q3A3B2    ), LEU3_PELUB  (Q4FP17    ), LEU3_PHACH  (O59930    ), 
LEU3_PHOLL  (Q7N128    ), LEU3_PHOPR  (Q6LV25    ), LEU3_PICAN  (P34733    ), 
LEU3_PICST  (O94114    ), LEU3_PROM9  (Q31B91    ), LEU3_PROMA  (Q7VC80    ), 
LEU3_PROMM  (Q7V842    ), LEU3_PROMP  (Q7V1R9    ), LEU3_PROMT  (Q46LE2    ), 
LEU3_PSE14  (Q48K97    ), LEU3_PSEAE  (Q51375    ), LEU3_PSEF5  (Q4KF05    ), 
LEU3_PSEHT  (Q3IJS3    ), LEU3_PSEPF  (Q3KF21    ), LEU3_PSEPK  (Q88LE5    ), 
LEU3_PSESM  (Q884C0    ), LEU3_PSEU2  (Q4ZUZ4    ), LEU3_PSYA2  (Q4FRV0    ), 
LEU3_PSYCK  (Q1QAF5    ), LEU3_RALSO  (Q8XXX5    ), LEU3_RHIEC  (Q2K2V0    ), 
LEU3_RHIL3  (Q1MA50    ), LEU3_RHILO  (Q98E57    ), LEU3_RHIME  (Q92KY8    ), 
LEU3_RHOBA  (Q7UIE1    ), LEU3_RHOE4  (C0ZXM4    ), LEU3_RHOFT  (Q21XI1    ), 
LEU3_RHOJR  (Q0S2H1    ), LEU3_RHOOB  (C1B2M3    ), LEU3_RHOP2  (Q2J3B4    ), 
LEU3_RHOPA  (Q6ND82    ), LEU3_RHOPB  (Q21CS1    ), LEU3_RHORT  (Q2RV53    ), 
LEU3_RHOS4  (Q3IZJ3    ), LEU3_RUEPO  (Q5LWZ5    ), LEU3_SACD2  (Q21IY5    ), 
LEU3_SACEN  (A4FMQ2    ), LEU3_SACEX  (Q96WT9    ), LEU3_SALCH  (Q57TE7    ), 
LEU3_SALPA  (Q5PDG2    ), LEU3_SALRD  (Q2S0M8    ), LEU3_SALTI  (Q8Z9I1    ), 
LEU3_SALTY  (P37412    ), LEU3_SCHPO  (P18869    ), LEU3_SHEON  (Q8E9N3    ), 
LEU3_SHIBS  (Q326G2    ), LEU3_SHIDS  (Q32K21    ), LEU3_SHIFL  (Q83SP1    ), 
LEU3_SHISS  (Q3Z5T7    ), LEU3_SODGM  (Q2NVW4    ), LEU3_SOLTU  (P29696    ), 
LEU3_SORMA  (Q6TWC4    ), LEU3_STAA3  (Q2FF66    ), LEU3_STAA8  (Q2FWK2    ), 
LEU3_STAAB  (Q2YUF1    ), LEU3_STAAC  (Q5HEE3    ), LEU3_STAAM  (P65100    ), 
LEU3_STAAN  (P65101    ), LEU3_STAAR  (Q6GF15    ), LEU3_STAAS  (Q6G7Q0    ), 
LEU3_STAAW  (Q8NVJ0    ), LEU3_STAEQ  (Q5HMF8    ), LEU3_STAES  (Q8CNL2    ), 
LEU3_STAHJ  (Q4L7U1    ), LEU3_STAS1  (Q49Z13    ), LEU3_STRAW  (Q82JN6    ), 
LEU3_STRCO  (O86504    ), LEU3_STRGG  (B1VZ57    ), LEU3_STRMU  (Q8DTG3    ), 
LEU3_STRR6  (Q8DPJ4    ), LEU3_STRT1  (Q5LZF3    ), LEU3_STRT2  (Q5M405    ), 
LEU3_SULDN  (Q30RK2    ), LEU3_SULSO  (Q9UXB2    ), LEU3_SULTO  (P50455    ), 
LEU3_SYNE7  (Q31N34    ), LEU3_SYNJA  (Q2JTN8    ), LEU3_SYNJB  (Q2JL30    ), 
LEU3_SYNP6  (Q5MZ40    ), LEU3_SYNPX  (Q7U840    ), LEU3_SYNS9  (Q3AYS1    ), 
LEU3_SYNSC  (Q3AIH4    ), LEU3_SYNY3  (P73960    ), LEU3_THEAQ  (P24098    ), 
LEU3_THEEB  (P59029    ), LEU3_THEFY  (Q47SB4    ), LEU3_THEMA  (Q9WZ26    ), 
LEU3_THET2  (P61494    ), LEU3_THET8  (Q5SIY4    ), LEU3_THETH  (P61495    ), 
LEU3_THICR  (Q31HI0    ), LEU3_THIDA  (Q3SHL3    ), LEU3_VIBCH  (Q9KP82    ), 
LEU3_VIBF1  (Q5E857    ), LEU3_VIBPA  (Q87SS8    ), LEU3_VIBVU  (Q8DEE0    ), 
LEU3_VIBVY  (Q7MP78    ), LEU3_WICAO  (Q9HDQ1    ), LEU3_WOLSU  (Q7M886    ), 
LEU3_XANAC  (Q8PH05    ), LEU3_XANC5  (Q3BPJ8    ), LEU3_XANC8  (Q4UYG2    ), 
LEU3_XANCP  (Q8P5L1    ), LEU3_XANOM  (Q2P762    ), LEU3_XANOR  (Q5H4C7    ), 
LEU3_XYLFA  (Q9PAX3    ), LEU3_XYLFT  (Q87BQ1    ), LEU3_YARLI  (P18120    ), 
LEU3_YEAST  (P04173    ), LEU3_YERPE  (Q8ZIG9    ), LEU3_YERPS  (Q66EM2    ), 
LEU3_ZYGBA  (Q9P3Y0    ), LEU3_ZYGRC  (Q96WI0    ), LEU3_ZYMMO  (Q5NPQ9    ), 
LEU3_ZYMTR  (Q9Y897    ), LYS12_SCHPO (O14104    ), LYS12_YEAST (P40495    ), 
TTUC1_AGRVI (Q44471    ), TTUC2_AGRVI (P70787    ), TTUC3_AGRVI (O34296    ), 
TTUC4_AGRVI (P70792    ), TTUC5_AGRVI (O34295    ), TTUC_BACSU  (P42958    ), 
TTUC_PSEPU  (Q51945    )
» more

UniProtKB/Swiss-Prot
False negative sequences
9 sequences

IDH1_ARATH  (Q8LFC0    ), IDH2_ARATH  (P93032    ), IDH3_ARATH  (O81796    ), 
IDHG2_MOUSE (Q8BPC6    ), IDHG2_RAT   (Q4QQT5    ), LEU3_BIFLD  (B3DTF8    ), 
LEU3_BIFLO  (Q8G500    ), LEU3_BIFLS  (B7GUI8    ), LEU3_SYMTH  (Q67JY2    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
7 sequences

IDH3A_CANLF (P54836    ), IDH3A_MESAU (P86225    ), IDH3A_PIG   (P56471    ), 
IDH3B_PIG   (P56472    ), IDH3G_PIG   (P41566    ), IDHC_NAEFO  (P83726    ), 
IDHC_PIG    (P20304    )
» more

PDB
[Detailed view]
112 PDB

1A05; 1AI2; 1AI3; 1BL5; 1CM7; 1CNZ; 1CW1; 1CW4; 1CW7; 1DPZ; 1DR0; 1DR8; 1G2U; 1GC8; 1GC9; 1GRO; 1GRP; 1HEX; 1HJ6; 1HQS; 1IDC; 1IDD; 1IDE; 1IDF; 1IDM; 1IKA; 1IPD; 1ISO; 1LWD; 1OSI; 1OSJ; 1P8F; 1PB1; 1PB3; 1SJS; 1T09; 1T0L; 1V53; 1V5B; 1VLC; 1W0D; 1WAL; 1WPW; 1XAA; 1XAB; 1XAC; 1XAD; 2AYQ; 2CMJ; 2CMV; 2D1C; 2G4O; 2IV0; 2QFV; 2QFW; 2QFX; 2QFY; 2Y3Z; 2Y40; 2Y41; 2Y42; 2ZTW; 3BLV; 3BLW; 3BLX; 3FLK; 3FMX; 3ICD; 3INM; 3LCB; 3R8W; 3TY3; 3TY4; 3UDO; 3UDU; 3VKZ; 3VL2; 3VL3; 3VL4; 3VL6; 3VL7; 3VMJ; 3VML; 3WZV; 3WZW; 3WZX; 3WZY; 4AJ3; 4AJA; 4AJB; 4AJC; 4AJR; 4AJS; 4BNP; 4F7I; 4HCX; 4ICD; 4IWH; 4JA8; 4KZO; 4L03; 4L04; 4L06; 4P69; 4UMX; 4WUO; 4XXV; 5ICD; 6ICD; 7ICD; 8ICD; 9ICD
» more

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