Entry: PS00478
General information about the entry
Entry nameLIM_DOMAIN_1
Accession numberPS00478
Entry typePATTERN
DateMAY-1991 (CREATED); DEC-2004 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00382
Name and characterization of the entry
DescriptionLIM zinc-binding domain signature.
PatternC-x(2)-C-x(15,21)-[FYWHPCR]-H-x(2)-[CH]-x(2)-C-x(2)-C-x(3)-[LIVMF].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 731 hits in 356 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 730 hits in 355 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 99.86 %
  • Recall (true hits / (true hits + false negatives)): 99.18 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 5
  • `Interesting' site in the pattern: 1,zinc
  • `Interesting' site in the pattern: 3,zinc
  • `Interesting' site in the pattern: 6,zinc
  • `Interesting' site in the pattern: 8,zinc
  • `Interesting' site in the pattern: 10,zinc
  • `Interesting' site in the pattern: 12,zinc
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ABLM1_HUMAN (O14639), ABLM1_MOUSE (Q8K4G5), ABLM2_HUMAN (Q6H8Q1), 
ABLM2_MOUSE (Q8BL65), ABLM2_RAT   (Q6KC51), ABLM3_HUMAN (O94929), 
ABLM3_MOUSE (Q69ZX8), AJUBA_HUMAN (Q96IF1), AJUBA_MOUSE (Q91XC0), 
AJUBA_RAT   (Q5U2Z2), APTE_DROME  (P29673), AWH_DROME   (Q8IRC7), 
CRIP1_BOVIN (Q56K04), CRIP1_HUMAN (P50238), CRIP1_MOUSE (P63254), 
CRIP1_RAT   (P63255), CRIP2_BOVIN (Q0VFX8), CRIP2_HUMAN (P52943), 
CRIP2_MOUSE (Q9DCT8), CRIP2_PONAB (Q5R7Y1), CRIP2_RAT   (P36201), 
CRIP3_HUMAN (Q6Q6R5), CRIP3_MOUSE (Q6Q6R3), CSRP1_BOVIN (Q3MHY1), 
CSRP1_CHICK (P67966), CSRP1_COTJA (P67967), CSRP1_HUMAN (P21291), 
CSRP1_MOUSE (P97315), CSRP1_PONAB (Q5RCT4), CSRP1_RAT   (P47875), 
CSRP2_BOVIN (Q32LE9), CSRP2_CHICK (P50460), CSRP2_COTJA (Q05158), 
CSRP2_HUMAN (Q16527), CSRP2_MOUSE (P97314), CSRP2_RAT   (Q62908), 
CSRP3_BOVIN (Q4U0T9), CSRP3_HUMAN (P50461), CSRP3_MOUSE (P50462), 
CSRP3_RAT   (P50463), DA1_ARATH   (P0C7Q8), DAR1_ARATH  (Q8W4F0), 
DAR2_ARATH  (Q0WSN2), DAR4_ARATH  (Q9FKN7), DAR5_ARATH  (Q84WJ0), 
DAR6_ARATH  (Q9FJX8), DAR7_ARATH  (Q9FJX9), ESN_DROME   (Q9U1I1), 
ESN_DROPS   (Q292U5), FBLI1_BOVIN (Q1JQB5), FBLI1_HUMAN (Q8WUP2), 
FBLI1_MOUSE (Q71FD7), FBLI1_PONAB (Q5REN1), FHL1_HUMAN  (Q13642), 
FHL1_MOUSE  (P97447), FHL1_RAT    (Q9WUH4), FHL2_BOVIN  (Q2KI95), 
FHL2_HUMAN  (Q14192), FHL2_MOUSE  (O70433), FHL2_RAT    (O35115), 
FHL3_BOVIN  (Q3ZBI6), FHL3_HUMAN  (Q13643), FHL3_MOUSE  (Q9R059), 
FHL5_BOVIN  (Q2YDK0), FHL5_HUMAN  (Q5TD97), FHL5_MACFA  (Q4R7A4), 
FHL5_MOUSE  (Q9WTX7), FHL5_RAT    (Q6AXT1), HM14_CAEEL  (P20271), 
ISL1_CHICK  (P50211), ISL1_DANRE  (P53405), ISL1_HUMAN  (P61371), 
ISL1_MESAU  (P61373), ISL1_MOUSE  (P61372), ISL1_RAT    (P61374), 
ISL2A_DANRE (P53406), ISL2A_ONCTS (P53408), ISL2B_DANRE (P53407), 
ISL2B_ONCTS (P50212), ISL2_CHICK  (P53410), ISL2_HUMAN  (Q96A47), 
ISL2_MOUSE  (Q9CXV0), ISL2_RAT    (P50480), ISL3_ONCTS  (P53409), 
LASP1_BOVIN (Q3B7M5), LASP1_DROME (Q8I7C3), LASP1_HUMAN (Q14847), 
LASP1_MOUSE (Q61792), LASP1_PONAB (Q5R5W0), LASP1_RABIT (O77506), 
LASP1_RAT   (Q99MZ8), LDB3_HUMAN  (O75112), LDB3_MOUSE  (Q9JKS4), 
LHX1_CHICK  (P53411), LHX1_DANRE  (Q90476), LHX1_HUMAN  (P48742), 
LHX1_MESAU  (P63008), LHX1_MOUSE  (P63006), LHX1_PANTR  (Q5IS44), 
LHX1_RAT    (P63007), LHX1_SAIBB  (Q5IS89), LHX1_XENLA  (P29674), 
LHX2_HUMAN  (P50458), LHX2_MOUSE  (Q9Z0S2), LHX2_RAT    (P36198), 
LHX3_CHICK  (P53412), LHX3_DANRE  (Q90421), LHX3_HUMAN  (Q9UBR4), 
LHX3_MOUSE  (P50481), LHX3_PIG    (O97581), LHX3_XENLA  (P36200), 
LHX4_HUMAN  (Q969G2), LHX4_MOUSE  (P53776), LHX5_DANRE  (P52889), 
LHX5_HUMAN  (Q9H2C1), LHX5_MOUSE  (P61375), LHX5_RAT    (P61376), 
LHX5_XENLA  (P37137), LHX6_HUMAN  (Q9UPM6), LHX6_MOUSE  (Q9R1R0), 
LHX8_HUMAN  (Q68G74), LHX8_MOUSE  (O35652), LHX9_ASTFA  (A2I8Z7), 
LHX9_BOVIN  (A0JNI8), LHX9_CHICK  (Q90881), LHX9_DANRE  (Q1LWV4), 
LHX9_GLARU  (A2PZF9), LHX9_HUMAN  (Q9NQ69), LHX9_MOUSE  (Q9WUH2), 
LHX9_RAT    (Q80W90), LHX9_XENLA  (Q68EY3), LIM3L_HUMAN (P0CW20), 
LIMA1_HUMAN (Q9UHB6), LIMA1_MOUSE (Q9ERG0), LIMA_DICDI  (Q54QR1), 
LIMB_DICDI  (Q54NW4), LIMC1_HUMAN (Q9UPQ0), LIMC1_MOUSE (Q3UH68), 
LIMC1_XENLA (Q3KQW7), LIMCH_DICDI (Q55GV9), LIMC_DICDI  (Q9BIW5), 
LIMD1_HUMAN (Q9UGP4), LIMD1_MOUSE (Q9QXD8), LIMD2_BOVIN (Q1LZA7), 
LIMD2_HUMAN (Q9BT23), LIMD2_MOUSE (Q8BGB5), LIMD2_RAT   (Q4KM31), 
LIMD_DICDI  (Q9BIW4), LIME_DICDI  (O60952), LIMF_DICDI  (Q86I44), 
LIMG_DICDI  (Q55DS4), LIMK1_CHICK (Q8QFP8), LIMK1_DROME (Q8IR79), 
LIMK1_HUMAN (P53667), LIMK1_MOUSE (P53668), LIMK1_RAT   (P53669), 
LIMK1_XENLA (O42565), LIMK2_BOVIN (Q32L23), LIMK2_CHICK (P53666), 
LIMK2_HUMAN (P53671), LIMK2_MOUSE (O54785), LIMK2_RAT   (P53670), 
LIMKA_DICDI (Q54L00), LIMKB_DICDI (P0CD62), LIMS1_HUMAN (P48059), 
LIMS1_MOUSE (Q99JW4), LIMS2_BOVIN (Q2KJ33), LIMS2_HUMAN (Q7Z4I7), 
LIMS2_MOUSE (Q91XD2), LIMS3_HUMAN (P0CW19), LIN11_CAEEL (P20154), 
LMCD1_BOVIN (Q17QE2), LMCD1_HUMAN (Q9NZU5), LMCD1_MOUSE (Q8VEE1), 
LMCD1_PIG   (Q5PXT2), LMO3_BOVIN  (Q2KIA3), LMO3_DANRE  (Q503U0), 
LMO3_HUMAN  (Q8TAP4), LMO3_MOUSE  (Q8BZL8), LMO3_PONAB  (Q5RBW7), 
LMO3_RAT    (Q99MB5), LMO3_XENLA  (Q9YH16), LMO41_XENTR (Q5FVB2), 
LMO42_XENTR (Q6DJ06), LMO4A_XENLA (Q8AW92), LMO4B_XENLA (Q801P0), 
LMO4_BOVIN  (Q3SWZ8), LMO4_HUMAN  (P61968), LMO4_MOUSE  (P61969), 
LMO7_HUMAN  (Q8WWI1), LMX1A_HUMAN (Q8TE12), LMX1A_MESAU (Q04650), 
LMX1A_MOUSE (Q9JKU8), LMX1B_CHICK (P53413), LMX1B_HUMAN (O60663), 
LMX1B_MESAU (Q60564), LMX1B_MOUSE (O88609), LMX1B_XENLA (Q8UVR3), 
LPP_CHICK   (Q5F464), LPP_HUMAN   (Q93052), LPP_MOUSE   (Q8BFW7), 
LPP_RAT     (Q5XI07), LPXN_HUMAN  (O60711), LPXN_MOUSE  (Q99N69), 
LRG1_YEAST  (P35688), MEC3_CAEBR  (P34764), MEC3_CAEEL  (P09088), 
MEC3_CAERE  (P34765), MICA1_HUMAN (Q8TDZ2), MICA1_MOUSE (Q8VDP3), 
MICA2_HUMAN (O94851), MICA2_MOUSE (Q8BML1), MICA3_HUMAN (Q7RTP6), 
MICA3_MOUSE (Q8CJ19), MILK1_HUMAN (Q8N3F8), MILK1_MOUSE (Q8BGT6), 
MILK2_HUMAN (Q8IY33), MLP1_DROME  (P53777), MLP2_DROME  (Q24400), 
NRAP_HUMAN  (Q86VF7), NRAP_MOUSE  (Q80XB4), PAXB_DICDI  (Q8MML5), 
PAXI_CHICK  (P49024), PAXI_HUMAN  (P49023), PAXI_MOUSE  (Q8VI36), 
PAXI_PONAB  (Q5R7I1), PAXI_RAT    (Q66H76), PDLI1_BOVIN (Q5E9E1), 
PDLI1_HUMAN (O00151), PDLI1_MOUSE (O70400), PDLI1_RAT   (P52944), 
PDLI2_BOVIN (Q3T0C8), PDLI2_HUMAN (Q96JY6), PDLI2_MACFA (Q9GKU1), 
PDLI2_MOUSE (Q8R1G6), PDLI2_RAT   (Q6AYD6), PDLI3_BOVIN (Q3SYZ8), 
PDLI3_CHICK (Q9PU47), PDLI3_HUMAN (Q53GG5), PDLI3_MOUSE (O70209), 
PDLI3_PIG   (Q6QGC0), PDLI3_RAT   (Q66HS7), PDLI3_XENLA (Q6GLJ6), 
PDLI4_BOVIN (Q3T005), PDLI4_CHICK (Q9PW72), PDLI4_HUMAN (P50479), 
PDLI4_MOUSE (P70271), PDLI4_RAT   (P36202), PDLI5_HUMAN (Q96HC4), 
PDLI5_MOUSE (Q8CI51), PDLI5_RAT   (Q62920), PDLI7_BOVIN (Q3SX40), 
PDLI7_CHICK (Q679P3), PDLI7_DANRE (Q6P7E4), PDLI7_HUMAN (Q9NR12), 
PDLI7_MOUSE (Q3TJD7), PDLI7_RAT   (Q9Z1Z9), PDLI7_XENLA (Q6INU3), 
PIN2_CAEEL  (Q19157), PRI1A_XENLA (Q90Z06), PRI1B_XENLA (Q90WV2), 
PRIC1_AEDAE (Q174I2), PRIC1_ANOGA (Q7QJT4), PRIC1_DROME (A1Z6W3), 
PRIC1_DROPS (Q292U2), PRIC1_HUMAN (Q96MT3), PRIC1_MOUSE (Q3U5C7), 
PRIC1_RAT   (Q71QF9), PRIC1_XENTR (Q28FG2), PRIC2_HUMAN (Q7Z3G6), 
PRIC2_MOUSE (Q80Y24), PRIC3_HUMAN (O43900), PRIC3_MOUSE (Q80VL3), 
PRIC4_HUMAN (Q2TBC4), PXL1_CAEEL  (Q09476), PXL1_YEAST  (P36166), 
RBTN1_BOVIN (Q0P5B3), RBTN1_DANRE (Q8JFQ2), RBTN1_HUMAN (P25800), 
RBTN1_MOUSE (Q924W9), RBTN1_XENLA (Q3B8H4), RBTN2_BOVIN (Q1LZ94), 
RBTN2_DANRE (Q9PTJ3), RBTN2_HUMAN (P25791), RBTN2_MOUSE (P25801), 
RBTN2_XENLA (Q90XH3), RBTN2_XENTR (Q5M8V8), RGA1_SCHPO  (O43052), 
RGA1_YEAST  (P39083), RGA2_YEAST  (Q06407), RGA3_SCHPO  (O14014), 
RGA4_SCHPO  (O74360), SCEL_HUMAN  (O95171), SCEL_MOUSE  (Q9EQG3), 
SF3_HELAN   (P29675), TES_AOTNA   (Q07DW1), TES_ATEAB   (Q00PK1), 
TES_ATEGE   (Q09YL5), TES_BOVIN   (Q2YDE9), TES_CALJA   (Q2QLG8), 
TES_CALMO   (Q2QLC3), TES_CANFA   (A0M8U6), TES_CHICK   (Q90YH9), 
TES_CHLAE   (Q2IBA3), TES_COLGU   (Q07DZ4), TES_DASNO   (Q07E51), 
TES_EULMM   (Q2IBH0), TES_FELCA   (A0M8S5), TES_HORSE   (Q2QLB2), 
TES_HUMAN   (Q9UGI8), TES_LOXAF   (Q108U9), TES_MICMU   (Q2QL92), 
TES_MONDO   (Q2QLA1), TES_MOUSE   (P47226), TES_MUNMU   (Q09YK3), 
TES_MUNRE   (Q07DX3), TES_MUSPF   (Q07E27), TES_NEONE   (Q07E40), 
TES_NOMLE   (Q07DY3), TES_OTOGA   (Q2QLH9), TES_PANTR   (Q2QLF4), 
TES_PAPAN   (A0M8R4), TES_PIG     (Q2QLE3), TES_PONAB   (Q5RC52), 
TES_RABIT   (Q09YN8), TES_RAT     (Q2LAP6), TES_RHIFE   (Q2IBC3), 
TES_SAIBB   (Q09YI0), TES_SHEEP   (Q09YJ2), TES_XENLA   (Q7ZXE9), 
TES_XENTR   (Q6DIR5), TGFI1_BOVIN (Q3MHZ4), TGFI1_HUMAN (O43294), 
TGFI1_MOUSE (Q62219), TGFI1_RAT   (Q99PD6), TGFI1_XENLA (Q2TCH4), 
TRIP6_BOVIN (Q3SX26), TRIP6_HUMAN (Q15654), TRIP6_MOUSE (Q9Z1Y4), 
UNC97_CAEEL (P50464), WTIP_DANRE  (A8DZE6), WTIP_HUMAN  (A6NIX2), 
WTIP_MOUSE  (Q7TQJ8), WTIP_XENLA  (A9LS46), XIRP2_MOUSE (Q4U4S6), 
Y6787_DICDI (Q55BI0), YOCC_SCHPO  (O74398), ZASP_DROME  (A1ZA47), 
ZN185_HUMAN (O15231), ZN185_MOUSE (Q62394), ZYX_CHICK   (Q04584), 
ZYX_HUMAN   (Q15942), ZYX_MOUSE   (Q62523), ZYX_XENLA   (A5H447), 
ZYX_XENTR   (Q0VA45)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ADCE_DICDI  (Q55GN8), LASP1_CAEEL (P34416), LHX3_HALRO  (Q25132), 
Y2098_DICDI (Q55A66), YD266_YEAST (Q05580), YJ01_SCHPO  (Q76PD2)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
LASP1_PIG   (P80171)
False positive hits (sequences which do not belong to the set under consideration):
YEMC_SCHPO  (O14033)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1A7I; 1B8T; 1CTL; 1CXX; 1G47; 1IBI; 1IML; 1J2O; 1M3V; 1NYP; 1QLI; 1RUT; 1U5S; 1V6G; 1WIG; 1WYH; 1X3H; 1X4K; 1X4L; 1X61; 1X62; 1X63; 1X64; 1X68; 1X6A; 2CO8; 2COR; 2CU8; 2CUP; 2CUQ; 2CUR; 2D8X; 2D8Y; 2D8Z; 2DFY; 2DJ7; 2DLO; 2EGQ; 2EHE; 2JTN; 2KBX; 2L3K; 2L4Z; 2L6Y; 2L6Z; 2O10; 2O13; 2RGT; 2XJY; 2XJZ; 2XQN; 3F6Q; 3IXE; 3MMK;

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View entry in raw text format (no links)
Direct ScanProsite submission


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