Entry: PS00484

General information about the entry
Entry name THYROGLOBULIN_1_1
Accession number PS00484
Entry type PATTERN
Date MAY-1991 (CREATED); JUL-1999 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00377
Name and characterization of the entry
DescriptionThyroglobulin type-1 repeat signature.
Pattern [FYWHPVAS]-x(3)-C-x(3,4)-[SG]-x-[FYW]-x(3)-Q-x(5,12)-[FYW]-C-[VA]- x(3,4)-[SG].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 111 hits in 70 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 111 hits in 70 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 96.52 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 9
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
EPCAM_BOVIN (Q3T0L5), EPCAM_CHICK (Q5F381), EPCAM_HUMAN (P16422), 
EPCAM_MACMU (Q1WER1), EPCAM_MOUSE (Q99JW5), EPCAM_PIG   (Q75QW1), 
EPCAM_RAT   (O55159), EQST_ACTEQ  (P81439), HG2A_HUMAN  (P04233), 
HG2A_MOUSE  (P04441), HG2A_RAT    (P10247), IBP1_BOVIN  (P24591), 
IBP1_HUMAN  (P08833), IBP1_PIG    (Q75ZP3), IBP1_RAT    (P21743), 
IBP1_SPETR  (Q6Q484), IBP2A_DANRE (Q9PTH3), IBP2_BOVIN  (P13384), 
IBP2_CHICK  (P49705), IBP2_HUMAN  (P18065), IBP2_MOUSE  (P47877), 
IBP2_PIG    (P24853), IBP2_RAT    (P12843), IBP2_SHEEP  (Q29400), 
IBP2_XENLA  (Q5XHC5), IBP2_XENTR  (A4IIA2), IBP3_BOVIN  (P20959), 
IBP3_HUMAN  (P17936), IBP3_PIG    (P16611), IBP3_RAT    (P15473), 
IBP4_BOVIN  (Q05716), IBP4_HUMAN  (P22692), IBP4_MOUSE  (P47879), 
IBP4_PIG    (P24854), IBP4_RAT    (P21744), IBP4_SHEEP  (Q28893), 
IBP5_BOVIN  (Q05717), IBP5_HUMAN  (P24593), IBP5_MOUSE  (Q07079), 
IBP5_PIG    (Q28985), IBP5_RAT    (P24594), IBP5_XENLA  (Q90WV8), 
IBP6_BOVIN  (Q05718), IBP6_HUMAN  (P24592), IBP6_MOUSE  (P47880), 
IBP6_RAT    (P35572), NID1_HUMAN  (P14543), NID1_MOUSE  (P10493), 
NID2_HUMAN  (Q14112), NID2_MOUSE  (O88322), NID2_RAT    (B5DFC9), 
SAX_LITCT   (P31226), SMOC1_HUMAN (Q9H4F8), SMOC1_MOUSE (Q8BLY1), 
SMOC2_HUMAN (Q9H3U7), SMOC2_MOUSE (Q8CD91), TACD2_HUMAN (P09758), 
TACD2_MOUSE (Q8BGV3), TACD2_RAT   (Q6P9Z6), THYG_BOVIN  (P01267), 
THYG_HUMAN  (P01266), THYG_MOUSE  (O08710), THYG_RAT    (P06882), 
TICN1_HUMAN (Q08629), TICN1_MOUSE (Q62288), TICN2_HUMAN (Q92563), 
TICN2_MOUSE (Q9ER58), TICN3_HUMAN (Q9BQ16), TICN3_MOUSE (Q8BKV0), 
TICN3_PONAB (Q5RD69)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
IBP1_MOUSE  (P47876), IBP2B_DANRE (B3F211), IBP3_MOUSE  (P47878), 
PN16_PHONI  (P84032)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1ICF; 1L3H; 1RMJ; 1ZT3; 1ZT5; 2DSQ; 2DSR; 2H7T;

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