PROSITE logo

PROSITE entry PS00484


View entry in original PROSITE format
View entry in raw text format (no links)
View entry auxiliary file in raw text format (no links)
Direct ScanProsite submission
General information about the entry

Entry name [info] THYROGLOBULIN_1_1
Accession [info] PS00484
Entry type [info] PATTERN
Date [info] 01-MAY-1991 CREATED;
01-JUL-1999 DATA UPDATE;
29-MAY-2024 INFO UPDATE.
PROSITE Doc. [info] PDOC00377

Name and characterization of the entry

Description [info] Thyroglobulin type-1 repeat signature.
Pattern [info] 
[FYWHPVAS]-x(3)-C-x(3,4)-[SG]-x-[FYW]-x(3)-Q-x(5,12)-[FYW]-C-[VA]-
x(3,4)-[SG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2024_06 which contains 572'619 sequence entries.


Total number of hits 123 in 75 different sequences
Number of true positive hits 123 in 75 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.40 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences		 75 sequences 

COW_DROME   (Q9VCR3), EPCAM_BOVIN (Q3T0L5), EPCAM_CHICK (Q5F381), 

EPCAM_HUMAN (P16422), EPCAM_MACMU (Q1WER1), EPCAM_MOUSE (Q99JW5), 
EPCAM_PIG   (Q75QW1), EPCAM_RAT   (O55159), EQSTC_ACTEQ (P81439), 
HG2A_HUMAN  (P04233), HG2A_MOUSE  (P04441), HG2A_RAT(P10247), 
IBP1_BOVIN  (P24591), IBP1_HUMAN  (P08833), IBP1_ICTTR  (Q6Q484), 
IBP1_MOUSE  (P47876), IBP1_PIG(Q75ZP3), IBP1_RAT(P21743), 
IBP2A_DANRE (Q9PTH3), IBP2_BOVIN  (P13384), IBP2_CHICK  (P49705), 
IBP2_HUMAN  (P18065), IBP2_MOUSE  (P47877), IBP2_PIG(P24853), 
IBP2_RAT(P12843), IBP2_SHEEP  (Q29400), IBP2_XENLA  (Q5XHC5), 
IBP2_XENTR  (A4IIA2), IBP3_BOVIN  (P20959), IBP3_HUMAN  (P17936), 
IBP3_MOUSE  (P47878), IBP3_PIG(P16611), IBP3_RAT(P15473), 
IBP4_BOVIN  (Q05716), IBP4_HUMAN  (P22692), IBP4_MOUSE  (P47879), 
IBP4_PIG(P24854), IBP4_RAT(P21744), IBP4_SHEEP  (Q28893), 
IBP5_BOVIN  (Q05717), IBP5_HUMAN  (P24593), IBP5_MOUSE  (Q07079), 
IBP5_PIG(Q28985), IBP5_RAT(P24594), IBP5_XENLA  (Q90WV8), 
IBP6_BOVIN  (Q05718), IBP6_HUMAN  (P24592), IBP6_MOUSE  (P47880), 
IBP6_RAT(P35572), NID1_HUMAN  (P14543), NID1_MOUSE  (P10493), 
NID2_HUMAN  (Q14112), NID2_MOUSE  (O88322), NID2_RAT(B5DFC9), 
SAX_AQUCT   (P31226), SMOC1_HUMAN (Q9H4F8), SMOC1_MOUSE (Q8BLY1), 
SMOC2_HUMAN (Q9H3U7), SMOC2_MOUSE (Q8CD91), TACD2_HUMAN (P09758), 
TACD2_MOUSE (Q8BGV3), TACD2_RAT   (Q6P9Z6), THYG_BOVIN  (P01267), 
THYG_HUMAN  (P01266), THYG_MOUSE  (O08710), THYG_PIG(F1RRV3), 
THYG_RAT(P06882), TICN1_HUMAN (Q08629), TICN1_MOUSE (Q62288), 
TICN2_HUMAN (Q92563), TICN2_MOUSE (Q9ER58), TICN3_HUMAN (Q9BQ16), 
TICN3_MOUSE (Q8BKV0), TICN3_PONAB (Q5RD69), TK1A_HADIN  (A0A1D0C023)
» more

UniProtKB/Swiss-Prot
False negative sequences		 2 sequences 

IBP2B_DANRE (B3F211), PN16_PHONI  (P84032)


				
	

	

		PDB
[Detailed view]		
		
			28 PDB
			


			1ICF; 1L3H; 1RMJ; 1ZT3; 1ZT5; 2DSQ; 2DSR; 2H7T; 4MZV; 6I07; 6O0D; 6O0E; 
			
				6O0F; 6SCJ; 7B75; 7E5M; 7E5N; 7PEE; 7QTQ; 7UFG; 7WRQ; 8D6P; 8D6Q; 8D6S; 
				8D6T; 8D6U; 8VRW; 8VSP
			
			

			» more