Entry: PS00484

General information about the entry

Entry name [info] THYROGLOBULIN_1_1
Accession [info] PS00484
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); JUL-1999 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00377

Name and characterization of the entry

Description [info] Thyroglobulin type-1 repeat signature.
Pattern [info]
[FYWHPVAS]-x(3)-C-x(3,4)-[SG]-x-[FYW]-x(3)-Q-x(5,12)-[FYW]-C-[VA]-
x(3,4)-[SG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 113 in 72 different sequences
Number of true positive hits 113 in 72 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.26 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
72 sequences

EPCAM_BOVIN (Q3T0L5), EPCAM_CHICK (Q5F381), EPCAM_HUMAN (P16422), 
EPCAM_MACMU (Q1WER1), EPCAM_MOUSE (Q99JW5), EPCAM_PIG   (Q75QW1), 
EPCAM_RAT   (O55159), EQST_ACTEQ  (P81439), HG2A_HUMAN  (P04233), 
HG2A_MOUSE  (P04441), HG2A_RAT    (P10247), IBP1_BOVIN  (P24591), 
IBP1_HUMAN  (P08833), IBP1_MOUSE  (P47876), IBP1_PIG    (Q75ZP3), 
IBP1_RAT    (P21743), IBP1_SPETR  (Q6Q484), IBP2A_DANRE (Q9PTH3), 
IBP2_BOVIN  (P13384), IBP2_CHICK  (P49705), IBP2_HUMAN  (P18065), 
IBP2_MOUSE  (P47877), IBP2_PIG    (P24853), IBP2_RAT    (P12843), 
IBP2_SHEEP  (Q29400), IBP2_XENLA  (Q5XHC5), IBP2_XENTR  (A4IIA2), 
IBP3_BOVIN  (P20959), IBP3_HUMAN  (P17936), IBP3_MOUSE  (P47878), 
IBP3_PIG    (P16611), IBP3_RAT    (P15473), IBP4_BOVIN  (Q05716), 
IBP4_HUMAN  (P22692), IBP4_MOUSE  (P47879), IBP4_PIG    (P24854), 
IBP4_RAT    (P21744), IBP4_SHEEP  (Q28893), IBP5_BOVIN  (Q05717), 
IBP5_HUMAN  (P24593), IBP5_MOUSE  (Q07079), IBP5_PIG    (Q28985), 
IBP5_RAT    (P24594), IBP5_XENLA  (Q90WV8), IBP6_BOVIN  (Q05718), 
IBP6_HUMAN  (P24592), IBP6_MOUSE  (P47880), IBP6_RAT    (P35572), 
NID1_HUMAN  (P14543), NID1_MOUSE  (P10493), NID2_HUMAN  (Q14112), 
NID2_MOUSE  (O88322), NID2_RAT    (B5DFC9), SAX_LITCT   (P31226), 
SMOC1_HUMAN (Q9H4F8), SMOC1_MOUSE (Q8BLY1), SMOC2_HUMAN (Q9H3U7), 
SMOC2_MOUSE (Q8CD91), TACD2_HUMAN (P09758), TACD2_MOUSE (Q8BGV3), 
TACD2_RAT   (Q6P9Z6), THYG_BOVIN  (P01267), THYG_HUMAN  (P01266), 
THYG_MOUSE  (O08710), THYG_RAT    (P06882), TICN1_HUMAN (Q08629), 
TICN1_MOUSE (Q62288), TICN2_HUMAN (Q92563), TICN2_MOUSE (Q9ER58), 
TICN3_HUMAN (Q9BQ16), TICN3_MOUSE (Q8BKV0), TICN3_PONAB (Q5RD69)
» More

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

IBP2B_DANRE (B3F211), PN16_PHONI  (P84032)

		
PDB
[Detailed view]
9 PDB

1ICF; 1L3H; 1RMJ; 1ZT3; 1ZT5; 2DSQ; 2DSR; 2H7T; 4MZV

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