Entry: PS00484

General information about the entry

Entry name [info] THYROGLOBULIN_1_1
Accession [info] PS00484
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); JUL-1999 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00377

Name and characterization of the entry

Description [info] Thyroglobulin type-1 repeat signature.
Pattern [info]
[FYWHPVAS]-x(3)-C-x(3,4)-[SG]-x-[FYW]-x(3)-Q-x(5,12)-[FYW]-C-[VA]-
x(3,4)-[SG].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 114 in 73 different sequences
Number of true positive hits 114 in 73 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 2
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 98.28 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 9
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
73 sequences

COW_DROME   (Q9VCR3    ), EPCAM_BOVIN (Q3T0L5    ), EPCAM_CHICK (Q5F381    ), 
EPCAM_HUMAN (P16422    ), EPCAM_MACMU (Q1WER1    ), EPCAM_MOUSE (Q99JW5    ), 
EPCAM_PIG   (Q75QW1    ), EPCAM_RAT   (O55159    ), EQST_ACTEQ  (P81439    ), 
HG2A_HUMAN  (P04233    ), HG2A_MOUSE  (P04441    ), HG2A_RAT    (P10247    ), 
IBP1_BOVIN  (P24591    ), IBP1_HUMAN  (P08833    ), IBP1_ICTTR  (Q6Q484    ), 
IBP1_MOUSE  (P47876    ), IBP1_PIG    (Q75ZP3    ), IBP1_RAT    (P21743    ), 
IBP2A_DANRE (Q9PTH3    ), IBP2_BOVIN  (P13384    ), IBP2_CHICK  (P49705    ), 
IBP2_HUMAN  (P18065    ), IBP2_MOUSE  (P47877    ), IBP2_PIG    (P24853    ), 
IBP2_RAT    (P12843    ), IBP2_SHEEP  (Q29400    ), IBP2_XENLA  (Q5XHC5    ), 
IBP2_XENTR  (A4IIA2    ), IBP3_BOVIN  (P20959    ), IBP3_HUMAN  (P17936    ), 
IBP3_MOUSE  (P47878    ), IBP3_PIG    (P16611    ), IBP3_RAT    (P15473    ), 
IBP4_BOVIN  (Q05716    ), IBP4_HUMAN  (P22692    ), IBP4_MOUSE  (P47879    ), 
IBP4_PIG    (P24854    ), IBP4_RAT    (P21744    ), IBP4_SHEEP  (Q28893    ), 
IBP5_BOVIN  (Q05717    ), IBP5_HUMAN  (P24593    ), IBP5_MOUSE  (Q07079    ), 
IBP5_PIG    (Q28985    ), IBP5_RAT    (P24594    ), IBP5_XENLA  (Q90WV8    ), 
IBP6_BOVIN  (Q05718    ), IBP6_HUMAN  (P24592    ), IBP6_MOUSE  (P47880    ), 
IBP6_RAT    (P35572    ), NID1_HUMAN  (P14543    ), NID1_MOUSE  (P10493    ), 
NID2_HUMAN  (Q14112    ), NID2_MOUSE  (O88322    ), NID2_RAT    (B5DFC9    ), 
SAX_LITCT   (P31226    ), SMOC1_HUMAN (Q9H4F8    ), SMOC1_MOUSE (Q8BLY1    ), 
SMOC2_HUMAN (Q9H3U7    ), SMOC2_MOUSE (Q8CD91    ), TACD2_HUMAN (P09758    ), 
TACD2_MOUSE (Q8BGV3    ), TACD2_RAT   (Q6P9Z6    ), THYG_BOVIN  (P01267    ), 
THYG_HUMAN  (P01266    ), THYG_MOUSE  (O08710    ), THYG_RAT    (P06882    ), 
TICN1_HUMAN (Q08629    ), TICN1_MOUSE (Q62288    ), TICN2_HUMAN (Q92563    ), 
TICN2_MOUSE (Q9ER58    ), TICN3_HUMAN (Q9BQ16    ), TICN3_MOUSE (Q8BKV0    ), 
TICN3_PONAB (Q5RD69    )
» more

UniProtKB/Swiss-Prot
False negative sequences
2 sequences

IBP2B_DANRE (B3F211    ), PN16_PHONI  (P84032    )

		
PDB
[Detailed view]
9 PDB

1ICF; 1L3H; 1RMJ; 1ZT3; 1ZT5; 2DSQ; 2DSR; 2H7T; 4MZV

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