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Entry: PS00502
General information about the entry
Entry namePOLYGALACTURONASE
Accession numberPS00502
Entry typePATTERN
DateMAY-1991 (CREATED); NOV-1997 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00415
Associated ProRulePRU10052
Name and characterization of the entry
DescriptionPolygalacturonase active site.
Pattern[GSDENKRH]-x(2)-[VMFC]-x(2)-[GS]-H-G-[LIVMAG]-x(1,2)-[LIVM]-G-S.
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 105 hits in 105 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 105 hits in 105 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 54
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 66.04 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 6,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ADPG1_ARATH (O23147), ADPG2_ARATH (Q8RY29), PEHX_ERWCH  (P15922), 
PGLR1_ARATH (P49062), PGLR1_ASPAC (O74213), PGLR1_ASPCL (A1CIV8), 
PGLR1_ASPFN (B8N8M2), PGLR1_ASPNC (A2QAH3), PGLR1_ASPNG (P26213), 
PGLR1_ASPOR (Q2UHL4), PGLR1_ASPTN (Q0CMU3), PGLR1_COLLN (Q00446), 
PGLR1_MAIZE (P26216), PGLR1_PECCC (P18192), PGLR1_PENOL (Q9Y834), 
PGLR1_SCLSC (Q12708), PGLR2_ARATH (P49063), PGLR2_ASPAC (Q70HJ4), 
PGLR2_ASPAW (Q9P359), PGLR2_ASPKA (Q8NK98), PGLR2_ASPNC (A2R5S4), 
PGLR2_ASPNG (P26214), PGLR2_ASPTU (P19805), PGLR2_CHAOB (Q7M1E7), 
PGLR2_CRYJA (P43212), PGLR2_JUNAS (Q9FY19), PGLR2_MAIZE (P35338), 
PGLR2_PECCC (P26509), PGLR2_PENOL (Q9Y833), PGLR3_ARATH (Q9LW07), 
PGLR3_MAIZE (P35339), PGLR4_ARATH (Q949Z1), PGLR5_ARATH (Q94AJ5), 
PGLRA_ASPAW (Q9P358), PGLRA_ASPFC (B0Y4Z4), PGLRA_ASPFL (P41749), 
PGLRA_ASPFU (Q4WQT2), PGLRA_ASPKA (Q8NK99), PGLRA_ASPNC (A2R8F8), 
PGLRA_ASPNG (Q9P4W4), PGLRA_ASPPA (P49575), PGLRA_NEOFI (A1CVV8), 
PGLRB_ASPFC (B0YAH0), PGLRB_ASPFL (P41750), PGLRB_ASPFN (B8N7Z8), 
PGLRB_ASPFU (Q4WBE1), PGLRB_ASPKA (Q1HAY5), PGLRB_ASPNC (A2QCV8), 
PGLRB_ASPNG (Q9P4W3), PGLRB_ASPOR (P35335), PGLRB_EMENI (Q5B508), 
PGLRB_NEOFI (A1DAQ2), PGLRD_ASPFN (B8MW78), PGLRD_ASPNC (A2QTU0), 
PGLRD_ASPNG (Q9P4W2), PGLRD_ASPOR (Q2UT29), PGLRD_EMENI (Q5AYH4), 
PGLRD_NEOFI (A1DBR6), PGLRE_ASPNC (A2QBB6), PGLRE_ASPNG (O42809), 
PGLRX_ASPFC (B0YDE8), PGLRX_ASPFN (B8NG16), PGLRX_ASPFU (Q4WCZ8), 
PGLRX_ASPNC (A2R060), PGLRX_ASPNG (Q27UB3), PGLRX_ASPTN (Q0CGP0), 
PGLRX_ASPTU (Q00293), PGLRX_COCCA (Q00359), PGLRX_NEOFI (A1DLC1), 
PGLR_ACTDE  (P35336), PGLR_ASPFC  (B0XPA1), PGLR_ASPFU  (Q4WR80), 
PGLR_BRANA  (P35337), PGLR_COCCA  (P26215), PGLR_EMENI  (Q5ATQ3), 
PGLR_GIBFU  (Q07181), PGLR_GOSBA  (Q39766), PGLR_GOSHI  (Q39786), 
PGLR_MALDO  (P48978), PGLR_MEDSA  (Q40312), PGLR_NEOFI  (A1D145), 
PGLR_OENOR  (P24548), PGLR_PENDI  (Q9Y718), PGLR_PENEN  (O59925), 
PGLR_PENGR  (O93883), PGLR_PENJA  (O42824), PGLR_PERAE  (Q02096), 
PGLR_PRUPE  (P48979), PGLR_RALSL  (P20041), PGLR_RALSO  (P58598), 
PGLR_RHIRD  (P27644), PGLR_SOLLC  (P05117), PGLR_TOBAC  (Q05967), 
PGLR_YEAST  (P47180), PGLX1_EMENI (Q5ASG9), PGLX2_EMENI (Q5ARN5), 
PGXA_ASPNC  (A2QW66), PGXA_ASPNG  (Q27UB2), QRT2_ARATH  (Q9SFB7), 
XGHA_ASPFC  (B0Y9F8), XGHA_ASPFN  (B8NPS8), XGHA_ASPFU  (Q4WBT4), 
XGHA_ASPOR  (Q2UBD8), XGHA_EMENI  (Q5B7U1), XGHA_NEOFI  (A1DBT5)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PGLR2_PLAAC (Q6H9K0), PGLR6_ARATH (O22818), PGLRC_ASPAC (Q70HJ3), 
PGLRC_ASPNC (A2QL39), PGLRC_ASPNG (Q12554), PGLR_PHACE  (O97400), 
PGLR_VITVI  (A7PZL3), PGXB_ASPFC  (B0YAA4), PGXB_ASPFN  (B8NX60), 
PGXB_ASPFU  (Q4WBK6), PGXB_ASPNC  (A2QHG0), PGXB_ASPNG  (Q27UB1), 
PGXB_ASPOR  (Q2TW03), PGXB_ASPTN  (Q0C7H7), PGXB_EMENI  (Q873X6), 
PGXB_NEOFI  (A1DAX2), PGXC_ASPFC  (B0XYC4), PGXC_ASPFN  (B8MZZ6), 
PGXC_ASPFU  (Q4WX94), PGXC_ASPNC  (A2QEW2), PGXC_ASPNG  (Q27UB0), 
PGXC_ASPOR  (Q2UQ40), PGXC_ASPTN  (Q0CXI3), PGXC_NEOFI  (A1D7I1), 
RGXA_ASPFN  (B8NJB0), RGXA_ASPNC  (A2QBB4), RGXA_ASPNG  (Q2EQQ2), 
RGXA_ASPOR  (Q2UP32), RGXB_ASPNC  (A2QG68), RGXC_ASPNC  (A2RAY7), 
RGXC_NEOFI  (A1D415), RHGA_ASPAC  (Q00001), RHGA_ASPFN  (B8NK45), 
RHGA_ASPNC  (A2QYE5), RHGA_ASPNG  (P87160), RHGA_ASPOR  (Q2U293), 
RHGA_EMENI  (Q5ARE6), RHGB_ASPFC  (B0Y0Q3), RHGB_ASPFU  (Q4WV23), 
RHGB_ASPNC  (A2R3G4), RHGB_ASPNG  (P87161), RHGB_ASPOR  (Q2TWN8), 
RHGB_ASPTN  (Q0CFC7), RHGB_NEOFI  (A1DED1), RHGC_ASPFN  (B8NGP8), 
RHGC_ASPNC  (A2QLQ5), RHGC_ASPOR  (Q2UFD2), RHGD_ASPNC  (A2QWT2), 
RHGE_ASPFN  (B8NKB9), RHGE_ASPNC  (A2QXE8), RHGE_ASPNG  (Q1ZZM3), 
RHGE_ASPOR  (Q2U7A4), XGHA_ASPNC  (A2QK83), XGHA_ASPTU  (Q9UUZ2)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1BHE; 1CZF; 1HG8; 1IA5; 1IB4; 1NHC;

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