Entry: PS00506

General information about the entry
Entry name BETA_AMYLASE_1
Accession number PS00506
Entry type PATTERN
Date MAY-1991 (CREATED); MAY-1991 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00414
Name and characterization of the entry
DescriptionBeta-amylase active site 1.
Pattern H-x-C-G-G-N-V-G-D.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 19 hits in 19 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 19 hits in 19 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.61 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 9,active_site
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AMYB_BACCE  (P36924), AMYB_BACCI  (P06547), AMYB_BACFI  (P96513), 
AMYB_HORVS  (P82993), AMYB_HORVU  (P16098), AMYB_IPOBA  (P10537), 
AMYB_MAIZE  (P55005), AMYB_MEDSA  (O22585), AMYB_PAEPO  (P21543), 
AMYB_SOYBN  (P10538), AMYB_THETU  (P19584), AMYB_TRIRP  (O65015), 
AMYB_VIGUN  (O64407), AMYB_WHEAT  (P93594), BAM1_ARATH  (Q9LIR6), 
BAM2_ARATH  (O65258), BAM3_ARATH  (O23553), BAM5_ARATH  (P25853), 
BAM7_ARATH  (O80831)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BAM4_ARATH  (Q9FM68), BAM6_ARATH  (Q8L762), BAM8_ARATH  (Q9FH80), 
BAM9_ARATH  (Q8VYW2)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
AMYB_SECCE  (P30271)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1B1Y; 1B90; 1B9Z; 1BFN; 1BTC; 1BYA; 1BYB; 1BYC; 1BYD; 1FA2; 1ITC; 1J0Y; 1J0Z; 1J10; 1J11; 1J12; 1J18; 1Q6C; 1Q6D; 1Q6E; 1Q6F; 1Q6G; 1UKO; 1UKP; 1V3H; 1V3I; 1VEM; 1VEN; 1VEO; 1VEP; 1WDP; 1WDQ; 1WDR; 1WDS; 2XFF; 2XFR; 2XFY; 2XG9; 2XGB; 2XGI; 3VOC; 5BCA;

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