Entry: PS00507

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General information about the entry

Entry name [info] NI_HGENASE_L_1
Accession [info] PS00507
Entry type [info] PATTERN
Date [info] MAY-1991 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00400

Name and characterization of the entry

Description [info] Nickel-dependent hydrogenases large subunit signature 1.
Pattern [info]
R-G-[LIVMF]-E-x(15)-[QESMP]-[RK]-x-C-[GR]-[LIVM]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 33 in 33 different sequences
Number of true positive hits 33 in 33 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 3
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 91.67 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] nickel at position 9
Site [info] nickel at position 12
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
33 sequences

FRHA_METBF  (P80489), FRHA_METJA  (Q60338), FRHA_METTH  (P19496), 
FRHA_METVO  (Q00390), HOXH_CUPNH  (P22320), MBHL_ALCHY  (P33374), 
MBHL_AZOCH  (P18191), MBHL_AZOVI  (P21949), MBHL_BRADU  (P12636), 
MBHL_CITFR  (Q46046), MBHL_CUPNH  (P31891), MBHL_ECOLI  (P0ACD8), 
MBHL_OLICO  (O33406), MBHL_RHILV  (P18636), MBHL_RHOCA  (P15284), 
MBHL_RUBGE  (P17632), MBHL_SHIFL  (P0ACD9), MBHL_WOLSU  (P31883), 
MBHM_ECO57  (P0ACE1), MBHM_ECOLI  (P0ACE0), MBHM_SHIFL  (P0ACE2), 
MVHA_METFE  (Q49179), MVHA_METTH  (Q50783), MVHA_METTM  (P60227), 
PHNL_DESFR  (P18188), PHNL_DESGI  (P12944), PHNL_DESVM  (P21852), 
PHSL_DESBA  (P13065), VHCA_METVO  (Q00404), VHUA_METJA  (Q58592), 
VHUA_METVO  (Q00407), Y1027_METJA (Q58433), Y515_METJA  (Q57935)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

HYD1A_PYRFU (E7FI44), HYD2A_PYRFU (E7FHC4), VHCA_ARCPA  (P84625)

		
UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

HOXH_RHOOP  (P22661), PHSL_DESNO  (P13066)

		
PDB
[Detailed view]
32 PDB

1CC1; 1FRF; 1FRV; 1H2A; 1H2R; 1UBH; 1UBJ; 1UBK; 1UBL; 1UBM; 1UBO; 1UBR; 1UBT; 1UBU; 1WUJ; 1WUK; 1WUL; 1YQ9; 1YQW; 1YRQ; 2FRV; 3CUR; 3CUS; 3H3X; 3RGW; 3UQY; 3USC; 3USE; 4GD3; 4IUB; 4IUC; 4IUD
» More

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