Entry: PS00538

General information about the entry
Entry name CHEMOTAXIS_TRANSDUC_1
Accession number PS00538
Entry type PATTERN
Date DEC-1991 (CREATED); DEC-1991 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00465
Name and characterization of the entry
DescriptionBacterial chemotaxis sensory transducers signature.
Pattern R-T-E-[EQ]-Q-x(2)-[SA]-[LIVM]-x-[EQ]-T-A-A-S-M-E-Q-L-T-A-T-V.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 8 hits in 8 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 8 hits in 8 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 17
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 32.00 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 4,methylation
  • `Interesting' site in the pattern: 10,methylation
  • `Interesting' site in the pattern: 17,methylation
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
MCP1_ECOLI  (P02942), MCP2_ECOLI  (P07017), MCP2_SALTY  (P02941), 
MCP3_ECOLI  (P05704), MCP4_ECOLI  (P07018), MCPC_SALTY  (Q02755), 
MCPD_ENTAK  (P21823), MCPS_ENTAK  (P21822)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ALKN_ALCBS  (Q0VTI9), ALKN_PSEOL  (Q9R9U8), BDLA_PSEAE  (Q9I3S1), 
MCP1_THEMA  (Q9WYR0), MCP2_THEMA  (Q9X0M7), MCP3_THEMA  (Q9X0N0), 
MCPA_BACSU  (P39214), MCPB_BACSU  (P39215), MCPC_BACSU  (P54576), 
TLPA_BACSU  (P39216), TLPB_BACSU  (P39217), TLPC_BACSU  (P39209), 
Y355_BACHK  (Q6HP15), Y469_BACHK  (Q6HNQ4), YFMS_BACSU  (O06477), 
YOAH_BACSU  (C0SP89), YVAQ_BACSU  (O32239)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1QU7; 3ZX6;

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