Entry: PS00540

General information about the entry
Entry name FERRITIN_1
Accession number PS00540
Entry type PATTERN
Date DEC-1991 (CREATED); JUN-1992 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00181
Name and characterization of the entry
DescriptionFerritin iron-binding regions signature 1.
Pattern E-x-[KR]-E-x(2)-E-[KR]-[LF]-[LIVMA]-x(2)-Q-N-x-R-x-G-R.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 44 hits in 44 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 44 hits in 44 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 24
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 4
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 64.71 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 1,metal(?)
  • `Interesting' site in the pattern: 4,metal(?)
  • `Interesting' site in the pattern: 6,metal(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
FRI1_BRANA  (Q96540), FRI1_LITCT  (P07229), FRI1_MAIZE  (P29036), 
FRI1_PEA    (P19975), FRI1_SOYBN  (P19976), FRI1_TOBAC  (Q8RX97), 
FRI2_LITCT  (P07798), FRI2_MAIZE  (P29390), FRI3_LITCT  (P07797), 
FRI3_VIGUN  (O65100), FRI4_ARATH  (Q9S756), FRIH2_SCHMA (P25320), 
FRIH3_XENLA (Q7SXA6), FRIHA_XENLA (P49948), FRIHB_XENLA (P17663), 
FRIH_BOVIN  (O46414), FRIH_CANFA  (Q95MP7), FRIH_CHICK  (P08267), 
FRIH_CRIGR  (P29389), FRIH_FELCA  (Q2MHN2), FRIH_HORSE  (Q8MIP0), 
FRIH_HUMAN  (P02794), FRIH_MOUSE  (P09528), FRIH_PONAB  (Q5R8J7), 
FRIH_RABIT  (P25915), FRIH_RAT    (P19132), FRIH_SALSA  (P49946), 
FRIH_TREBE  (P85838), FRIH_TRENE  (P85837), FRIH_TRIVU  (Q9XT73), 
FRIL1_MOUSE (P29391), FRIL1_RAT   (P02793), FRIL2_MOUSE (P49945), 
FRIL_BOVIN  (O46415), FRIL_CANFA  (Q53VB8), FRIL_FELCA  (Q2MHN1), 
FRIL_HORSE  (P02791), FRIL_HUMAN  (P02792), FRIL_PONAB  (Q5R538), 
FRIL_RABIT  (P09451), FRIS_LYMST  (P42577), FRI_MALXI   (Q94FY2), 
FRI_PHAVU   (P25699), FTMT_MOUSE  (Q9D5H4)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
FHL17_HUMAN (Q9BXU8), FHL17_MOUSE (Q99MX2), FHL19_HUMAN (P0C7X4), 
FRI1_ARATH  (Q39101), FRI2_ARATH  (Q9SRL5), FRI2_SOYBN  (Q94IC4), 
FRI2_TOBAC  (Q8H1T3), FRI2_VIGUN  (Q41709), FRI3_ARATH  (Q9LYN2), 
FRI3_SOYBN  (Q948P6), FRI4_SOYBN  (Q948P5), FRIH1_SCHMA (P25319), 
FRIH_ECHGR  (O46119), FRIH_PIG    (P19130), FRIH_SHEEP  (P18685), 
FRIL_XENLA  (Q7SXA5), FRIML_TREBE (P85836), FRIMS_TREBE (P85839), 
FRIM_TRENE  (P85835), FRIY_LYMST  (P42578), FRI_AEDAE   (P41822), 
FRI_PACLE   (Q26061), FTMT_BOVIN  (Q2YDI9), FTMT_HUMAN  (Q8N4E7)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
FRI2_PEA    (P83445), FRIH_ANAPL  (P80145), FRIL_PIG    (P19133), 
FRIL_SHEEP  (P18686)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AEW; 1BG7; 1DAT; 1FHA; 1GWG; 1H96; 1HRS; 1IER; 1IES; 1LB3; 1MFR; 1RCD; 1RCG; 1RCI; 1XZ1; 1XZ3; 2CEI; 2CHI; 2CIH; 2CLU; 2CN6; 2CN7; 2FFX; 2FG4; 2FG8; 2FHA; 2G4H; 2GYD; 2IU2; 2V2I; 2V2J; 2W0O; 2Z5P; 2Z5Q; 2Z5R; 2ZA6; 2ZA7; 2ZA8; 2ZG7; 2ZG8; 2ZG9; 2ZUR; 3AF7; 3AF8; 3AF9; 3AJO; 3AJP; 3AJQ; 3F32; 3F33; 3F34; 3F35; 3F36; 3F37; 3F38; 3F39; 3FI6; 3H7G; 3HX2; 3HX5; 3HX7; 3KA3; 3KA4; 3KA6; 3KA8; 3KA9; 3KXU; 3NOZ; 3NP0; 3NP2; 3O7R; 3O7S; 3RAV; 3RBC; 3RD0; 3RE7; 3RGD; 3SH6; 3SHX; 3U90; 4DAS; 4DE6;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or