Entry: PS00552

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General information about the entry

Entry name [info] HTH_MERR_1
Accession [info] PS00552
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); NOV-1995 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00477

Name and characterization of the entry

Description [info] MerR-type HTH domain signature.
Pattern [info]
[GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)-
[LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 48 in 48 different sequences
Number of true positive hits 48 in 48 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 31
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 60.76 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
48 sequences

BLTR_BACSU  (P39842), BMRR_BACSU  (P39075), CUER_ECO57  (Q8XD09), 
CUER_ECOL6  (Q8FK74), CUER_ECOLI  (P0A9G4), CUER_SALTI  (Q8Z8S3), 
CUER_SALTY  (Q93CH6), CUER_SHIFL  (P0A9G5), CUER_VIBC3  (A5F2W6), 
CUER_VIBCH  (P0C6D2), GLNR_BACAN  (P62172), GLNR_BACCE  (P62173), 
GLNR_BACCR  (P62174), GLNR_BACSU  (P37582), HMRR2_RHIME (P58379), 
HMRR_SINMW  (Q9X5X4), HSPR_STRCO  (P40183), MERR_ACIFR  (P22896), 
MERR_BACCE  (P22853), MERR_PSEAI  (P0A183), MERR_PSEFL  (P0A184), 
MERR_PSESP  (P69413), MERR_SALTI  (P0A2Q8), MERR_SERMA  (P13111), 
MERR_SHIFL  (P0A2Q9), MERR_STAAU  (P22874), MLRA_ECOLI  (P33358), 
MLRA_SALTS  (E1WH94), MLRA_SALTY  (P0CL12), NOLA_BRADU  (P22537), 
NOLA_BRAEL  (P50329), NOLA_BRASN  (P50330), SOXR_CHRVO  (Q9ZHI4), 
SOXR_ECO57  (P0ACS3), SOXR_ECOLI  (P0ACS2), SOXR_PSEAE  (Q51506), 
SOXR_SALTI  (P0A2R1), SOXR_SALTY  (P0A2R0), SOXR_SHIFL  (P0ACS4), 
TIPA_STRCO  (P0A4T8), TIPA_STRLI  (P0A4T9), Y186_HAEIN  (P44558), 
Y293_HAEIN  (P44617), YCGE_ECOLI  (P75989), YYAN_BACSU  (P37510), 
ZNTR_ECO57  (P0ACS6), ZNTR_ECOLI  (P0ACS5), ZNTR_HAEIN  (P45277)
» More

UniProtKB/Swiss-Prot
False negative sequences
31 sequences

ADHR_BACSU  (O06008), CARA_MYXXA  (Q50899), CARH_MYXXA  (Q50900), 
CARH_THET8  (Q53W62), CUER_BACSU  (O07586), CUER_YERPE  (Q8ZCA8), 
HMMR_RHILV  (Q9X5V4), HMRR1_RHIME (P58378), MERD_ACICA  (Q52110), 
MERD_ENTAG  (P0A2Q7), MERD_PSEAI  (P06689), MERD_PSEFL  (Q51773), 
MERD_SALTI  (P0A2Q6), MERD_SERMA  (P08654), MERD_SHIFL  (P20102), 
MTA_BACSU   (P71039), SKGA_CAUCN  (B8H172), SKGA_CAUCR  (P0CAV4), 
TNRA_BACSU  (Q45666), Y1828_MYCTO (P9WME6), Y1828_MYCTU (P9WME7), 
Y1830_MYCTO (P9WME4), Y1830_MYCTU (P9WME5), Y1859_MYCBO (P67670), 
Y1861_MYCBO (P67672), Y4778_PSEAE (Q9HV30), Y603_AQUAE  (O66861), 
Y701_SYNY3  (Q55963), YDFL_BACSU  (P96690), YFMP_BACSU  (O06474), 
YHI4_RHOCA  (P30791)
» More

PDB
[Detailed view]
20 PDB

1EXI; 1EXJ; 1Q05; 1Q06; 1Q07; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D70; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S
» More

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