Entry: PS00552
General information about the entry
Entry nameHTH_MERR_1
Accession numberPS00552
Entry typePATTERN
DateDEC-1991 (CREATED); NOV-1995 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00477
Name and characterization of the entry
DescriptionMerR-type HTH domain signature.
Pattern[GSA]-x-[LIVMFA]-[ASM]-x(2)-[STACLIV]-[GSDENQR]-[LIVC]-[STANHK]-x(3)- [LIVM]-[RHF]-x-[YW]-[DEQ]-x(2,3)-[GHDNQ]-[LIVMF](2).
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 48 hits in 48 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 48 hits in 48 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 26
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 64.86 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
BLTR_BACSU  (P39842), BMRR_BACSU  (P39075), CUER_ECO57  (Q8XD09), 
CUER_ECOL6  (Q8FK74), CUER_ECOLI  (P0A9G4), CUER_SALTI  (Q8Z8S3), 
CUER_SALTY  (Q93CH6), CUER_SHIFL  (P0A9G5), CUER_VIBC3  (A5F2W6), 
CUER_VIBCH  (P0C6D2), GLNR_BACAN  (P62172), GLNR_BACCE  (P62173), 
GLNR_BACCR  (P62174), GLNR_BACSU  (P37582), HMRR2_RHIME (P58379), 
HMRR_SINMW  (Q9X5X4), HSPR_STRCO  (P40183), MERR_BACCE  (P22853), 
MERR_PSEAI  (P0A183), MERR_PSEFL  (P0A184), MERR_PSESP  (P69413), 
MERR_SALTI  (P0A2Q8), MERR_SERMA  (P13111), MERR_SHIFL  (P0A2Q9), 
MERR_STAAU  (P22874), MERR_THIFE  (P22896), MLRA_ECOLI  (P33358), 
MLRA_SALTS  (E1WH94), MLRA_SALTY  (P0CL12), NOLA_BRAEL  (P50329), 
NOLA_BRAJA  (P22537), NOLA_BRASN  (P50330), SOXR_CHRVO  (Q9ZHI4), 
SOXR_ECO57  (P0ACS3), SOXR_ECOLI  (P0ACS2), SOXR_PSEAE  (Q51506), 
SOXR_SALTI  (P0A2R1), SOXR_SALTY  (P0A2R0), SOXR_SHIFL  (P0ACS4), 
TIPA_STRCO  (P0A4T8), TIPA_STRLI  (P0A4T9), Y186_HAEIN  (P44558), 
Y293_HAEIN  (P44617), YCGE_ECOLI  (P75989), YYAN_BACSU  (P37510), 
ZNTR_ECO57  (P0ACS6), ZNTR_ECOLI  (P0ACS5), ZNTR_HAEIN  (P45277)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ADHR_BACSU  (O06008), CUER_BACSU  (O07586), CUER_YERPE  (Q8ZCA8), 
HMMR_RHILV  (Q9X5V4), HMRR1_RHIME (P58378), MERD_ACICA  (Q52110), 
MERD_ENTAG  (P0A2Q7), MERD_PSEAI  (P06689), MERD_PSEFL  (Q51773), 
MERD_SALTI  (P0A2Q6), MERD_SERMA  (P08654), MERD_SHIFL  (P20102), 
MTA_BACSU   (P71039), SKGA_CAUCN  (B8H172), SKGA_CAUCR  (P0CAV4), 
TNRA_BACSU  (Q45666), Y1828_MYCTU (P67669), Y1830_MYCTU (P67671), 
Y1859_MYCBO (P67670), Y1861_MYCBO (P67672), Y4778_PSEAE (Q9HV30), 
Y603_AQUAE  (O66861), Y701_SYNY3  (Q55963), YDFL_BACSU  (P96690), 
YFMP_BACSU  (O06474), YHI4_RHOCA  (P30791)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1EXI; 1EXJ; 1Q05; 1Q06; 1Q07; 1R8E; 2VZ4; 2ZHG; 2ZHH; 3D6Y; 3D6Z; 3D71; 3IAO; 3Q1M; 3Q2Y; 3Q3D; 3Q5P; 3Q5R; 3Q5S;

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