Entry: PS00555

General information about the entry

Entry name [info] ICOSAH_VIR_COAT_S
Accession [info] PS00555
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); NOV-1997 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00480

Name and characterization of the entry

Description [info] Plant viruses icosahedral capsid proteins 'S' region signature.
Pattern [info]
[FYW]-x-[PSTA]-x(7)-G-x-[LIVM]-x-[LIVM]-x-[FYWI]-x(2)-D-x(5)-P.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_08 which contains 551'987 sequence entries.


Total number of hits 18 in 18 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 1
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 94.44 %
Recall (true positives / (true positives + false negatives)) 94.44 %

Comments [info]

Taxonomic range [info] Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

CAPSD_AMCV  (P14836    ), CAPSD_CARMS (Q9Q6X7    ), CAPSD_CARMV (P04383    ), 
CAPSD_CFMVN (Q66012    ), CAPSD_CNV   (P15183    ), CAPSD_CRV   (P17456    ), 
CAPSD_MCMVK (P11642    ), CAPSD_MNSV  (P19899    ), CAPSD_POLVP (Q9QBU3    ), 
CAPSD_RCNMV (P22955    ), CAPSD_SBMVA (O72158    ), CAPSD_SCPMV (P03607    ), 
CAPSD_TBSVB (P11795    ), CAPSD_TBSVC (P11689    ), CAPSD_TCV   (P06663    ), 
CAPSD_TNVA  (P22959    ), CAPSD_TNVD  (P27210    )
» more

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

CAPSD_PNLV  (Q5NDM8    )

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

TCTP2_DICDI (Q54RX1    )

		
PDB
[Detailed view]
8 PDB

1OPO; 2TBV; 2ZAH; 3ZX8; 3ZX9; 3ZXA; 4LLF; 4SBV

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