Entry: PS00555

General information about the entry
Entry name ICOSAH_VIR_COAT_S
Accession number PS00555
Entry type PATTERN
Date DEC-1991 (CREATED); NOV-1997 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00480
Name and characterization of the entry
DescriptionPlant viruses icosahedral capsid proteins 'S' region signature.
Pattern [FYW]-x-[PSTA]-x(7)-G-x-[LIVM]-x-[LIVM]-x-[FYWI]-x(2)-D-x(5)-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 18 hits in 18 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 17 hits in 17 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 1
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 94.44 %
  • Recall (true hits / (true hits + false negatives)): 94.44 %
Comments
  • Taxonomic range: Eukaryotic viruses
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CAPSD_AMCV  (P14836), CAPSD_CARMS (Q9Q6X7), CAPSD_CARMV (P04383), 
CAPSD_CFMVN (Q66012), CAPSD_CNV   (P15183), CAPSD_CRV   (P17456), 
CAPSD_MCMVK (P11642), CAPSD_MNSV  (P19899), CAPSD_POLVP (Q9QBU3), 
CAPSD_RCNMV (P22955), CAPSD_SBMVA (O72158), CAPSD_SCPMV (P03607), 
CAPSD_TBSVB (P11795), CAPSD_TBSVC (P11689), CAPSD_TCV   (P06663), 
CAPSD_TNVA  (P22959), CAPSD_TNVD  (P27210)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CAPSD_PNLV  (Q5NDM8)
False positive hits (sequences which do not belong to the set under consideration):
TCTP2_DICDI (Q54RX1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1OPO; 2TBV; 2ZAH; 3ZX8; 3ZX9; 3ZXA; 4SBV;

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