Entry: PS00574

General information about the entry
Entry name FATTY_ACID_DESATUR_2
Accession number PS00574
Entry type PATTERN
Date DEC-1991 (CREATED); NOV-1995 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00399
Name and characterization of the entry
DescriptionFatty acid desaturases family 2 signature.
Pattern [ST]-[SA]-x(3)-[QR]-[LI]-x(5,6)-D-Y-x(2)-[LIVMFYW]-[LIVM]-[DE].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 22 hits in 22 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 22 hits in 22 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 91.67 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
DESA_SYNY3  (P20388), STAD3_OPHAA (E3PZS0), STAD3_OPHSP (E3PZR9), 
STAD5_ORYSI (A2XSL4), STAD5_ORYSJ (Q40731), STAD6_ARATH (Q84VY3), 
STAD7_ARATH (O22832), STADS_BRANA (Q01771), STAD_BRANA  (P29108), 
STAD_CARTI  (P22243), STAD_CORSA  (P32063), STAD_CUCSA  (P32061), 
STAD_ELAGV  (O24428), STAD_GOSHI  (Q42770), STAD_HELAN  (Q96456), 
STAD_LINUS  (P32062), STAD_OLEEU  (Q43593), STAD_RICCO  (P22337), 
STAD_SIMCH  (Q01753), STAD_SOLTU  (P46253), STAD_SOYBN  (Q42807), 
STAD_SPIOL  (P28645)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
DESA_SPIPL  (Q54794), STAD_SOLCO  (Q41319)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AFR; 1OQ4; 1OQ7; 1OQ9; 1OQB; 2J2F; 2XZ0; 2XZ1;

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