Entry: PS00576

General information about the entry
Entry name GRAM_NEG_PORIN
Accession number PS00576
Entry type PATTERN
Date DEC-1991 (CREATED); NOV-1995 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00498
Name and characterization of the entry
DescriptionGeneral diffusion Gram-negative porins signature.
Pattern [LIVMFY]-x(2)-G-x(2)-Y-x-F-x-K-x(2)-[SN]-[STAV]-[LIVMFYW]-V.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 44 hits in 44 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 44 hits in 44 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 88.00 %
Comments
  • Taxonomic range: Bacteriophages, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
NMPC_ECOLI  (P21420), OMPA1_NEIMC (P13415), OMPA2_NEIMC (P18194), 
OMPA_NEIGO  (P05430), OMPA_NEIMA  (P57041), OMPA_NEIMB  (P0DH58), 
OMPA_NEIMH  (E6MXW0), OMPB1_NEIGO (P18195), OMPB1_NEIMB (P30690), 
OMPB2_NEIGO (P20148), OMPB2_NEIMI (P30687), OMPB3_NEIMI (P30688), 
OMPB4_NEIMI (P30689), OMPB_NEILA  (P30691), OMPB_NEIMA  (P57042), 
OMPB_NEIMH  (E6MZM0), OMPB_NEISI  (P30692), OMPC_ECO57  (Q8XE41), 
OMPC_ECOL6  (Q8CVW1), OMPC_ECOLI  (P06996), OMPC_KLEPN  (Q48473), 
OMPC_SALTI  (P0A264), OMPC_SALTY  (P0A263), OMPC_SERMA  (Q54471), 
OMPD_CITK8  (A8AGM8), OMPD_SALCH  (Q57P83), OMPD_SALPA  (Q5PHY0), 
OMPD_SALT1  (D0ZXQ1), OMPD_SALTY  (P37592), OMPF_ECOLI  (P02931), 
OMPF_SALTI  (Q56113), OMPF_SALTY  (P37432), OMPF_SERMA  (O33980), 
OMPF_XENNA  (Q56828), OMPS1_SALTI (Q56110), PHOE_CITFR  (Q01605), 
PHOE_ECOLI  (P02932), PHOE_ENTCL  (Q47490), PHOE_KLEOX  (Q01606), 
PHOE_KLEPN  (P30704), PHOE_SALTI  (Q56119), PHOE_SALTY  (P30705), 
PORI_BPPA2  (P07238), YEDS_ECOLI  (P76335)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
FHAC_BORPE  (P35077), HLYB_PROMI  (P16465), HXUB1_HAEIN (P44601), 
HXUB2_HAEIF (P45356), HXUB_HAEI8  (Q4QNS5), IBPB_HAES2  (B0UUL1)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
OMP_SODGL   (P83079)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1BT9; 1GFM; 1GFN; 1GFO; 1GFP; 1GFQ; 1HXT; 1HXU; 1HXX; 1IIV; 1MPF; 1OPF; 1OSM; 1PHO; 2J1N; 2J4U; 2OMF; 2XE1; 2ZFG; 2ZLD; 2ZLE; 3FYX; 3HW9; 3HWB; 3K19; 3K1B; 3NB3; 3NSG; 3POQ; 3POU; 3POX; 3UPG; 3UU2; 4A8D; 4GCP; 4GCQ; 4GCS;

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