Entry: PS00597

General information about the entry
Entry name PLANT_LTP
Accession number PS00597
Entry type PATTERN
Date DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00516
Name and characterization of the entry
DescriptionPlant lipid transfer proteins signature.
Pattern [LIVM]-[PA]-x(2)-C-x(1,2)-[LIVM]-x(1,2)-[LIVMST]-x-[LIVMFY]-x(1,2)- [LIVMF]-[STRD]-x(3)-[DN]-C-x(2)-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 82 hits in 82 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 82 hits in 82 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 18
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 15
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 82.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 4,disulfide
  • `Interesting' site in the pattern: 16,disulfide
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
LTP1_MORNI  (P85894), NLT11_PARJU (P43217), NLT12_PARJU (O04404), 
NLT13_PARJU (Q40905), NLT21_PARJU (P55958), NLT22_PARJU (O04403), 
NLT2A_ORYSJ (Q7XJ39), NLT2B_ORYSJ (Q2QYL2), NLT41_HORVU (Q43767), 
NLT42_HORVU (Q43875), NLT43_HORVU (Q42842), NLTP1_AMAHP (P83167), 
NLTP1_ARATH (Q42589), NLTP1_BRANA (Q42614), NLTP1_GOSHI (Q42762), 
NLTP1_HORVU (P07597), NLTP1_LENCU (A0AT28), NLTP1_ORYSI (A2ZHF1), 
NLTP1_ORYSJ (Q0IQK9), NLTP1_PRUAR (P81651), NLTP1_PRUDO (P82534), 
NLTP1_PRUDU (Q43017), NLTP1_PRUPE (P81402), NLTP1_SOLLC (P27056), 
NLTP1_SOLPN (O24037), NLTP1_SORBI (Q43193), NLTP1_TOBAC (Q42952), 
NLTP1_VIGRR (P83434), NLTP1_WHEAT (P24296), NLTP2_ARATH (Q9S7I3), 
NLTP2_BRANA (Q42615), NLTP2_GOSHI (Q43129), NLTP2_LENCU (A0AT29), 
NLTP2_ORYSI (A2ZAT0), NLTP2_SOLCI (Q3YMR2), NLTP2_SOLLC (P93224), 
NLTP2_SOLPN (O24038), NLTP2_SORBI (Q43194), NLTP2_TOBAC (Q03461), 
NLTP3_ARATH (Q9LLR7), NLTP3_BRANA (Q42616), NLTP3_HORVU (Q43766), 
NLTP3_LENCU (A0AT30), NLTP3_ORYSI (A2ZAS9), NLTP3_ORYSJ (Q2QYL3), 
NLTP3_PRUDU (Q43019), NLTP3_VITSX (P80273), NLTP3_WHEAT (Q84N29), 
NLTP4_ARATH (Q9LLR6), NLTP4_LENCU (A0AT33), NLTP4_ORYSJ (O65091), 
NLTP5_ARATH (Q9XFS7), NLTP5_LENCU (A0AT31), NLTP5_VITSX (P85105), 
NLTP6_ARATH (Q9LDB4), NLTP6_GOSHI (O24418), NLTP6_LENCU (A0AT32), 
NLTP8_HORVU (Q43871), NLTPA_ARATH (Q9LZV9), NLTPA_BRAOT (Q42641), 
NLTPA_RICCO (P10973), NLTPB_ARATH (Q2V3C1), NLTPB_BRAOT (Q42642), 
NLTPB_RICCO (P10974), NLTPC_ARATH (Q9SCZ0), NLTPC_RICCO (P10975), 
NLTPD_BRAOT (Q43304), NLTPD_RICCO (Q43119), NLTP_AMACA  (P80450), 
NLTP_BETVU  (Q43748), NLTP_CICAR  (O23758), NLTP_DAUCA  (P27631), 
NLTP_ELECO  (P23802), NLTP_GERHY  (Q39794), NLTP_LYCBA  (B3A0N2), 
NLTP_MAIZE  (P19656), NLTP_MALDO  (Q9M5X7), NLTP_PINTA  (Q41073), 
NLTP_PRUAV  (Q9M5X8), NLTP_PYRCO  (Q9M5X6), NLTP_SPIOL  (P10976), 
SCA_LILLO   (Q9SW93)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BLT4_HORVU  (P25307), NLT2G_WHEAT (P82900), NLT2P_WHEAT (P82901), 
NLTL1_ORYSJ (Q6ASY2), NLTP1_ACTDE (P86137), NLTP1_HELAN (P82007), 
NLTP2_ACTDE (P85206), NLTP2_HORVU (P20145), NLTP2_MAIZE (P83506), 
NLTP2_PRUAR (P82353), NLTP7_ARATH (Q9ZUK6), NLTP8_ARATH (Q9ZPW9), 
NLTP9_ARATH (Q6AWW0), NLTPD_ARATH (A8MQA2), NLTPE_ARATH (Q9FIT2), 
NLTPF_ARATH (Q9M0T1), NLTP_PEGHA  (B3EWH4), NLTP_VIGUN  (Q43681)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
AFP5_MALPA  (P83139), NLTP1_ACTCH (P85204), NLTP1_NIGSA (P86527), 
NLTP1_VITSX (P80275), NLTP2_VITSX (P33556), NLTP2_WHEAT (P39085), 
NLTP4_VITSX (P80274), NLTPB_WHEAT (P26913), NLTP_ARTVU  (P0C088), 
NLTP_CANSA  (P86838), NLTP_CITLI  (P84160), NLTP_CITSI  (P84161), 
NLTP_MUSAC  (P86333), NLTP_PINPI  (P26912), NLTP_RAPSA  (P29420)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1AFH; 1BE2; 1BV2; 1BWO; 1CZ2; 1FK0; 1FK1; 1FK2; 1FK3; 1FK4; 1FK5; 1FK6; 1FK7; 1GH1; 1JTB; 1LIP; 1MID; 1MZL; 1MZM; 1RZL; 1SIY; 1T12; 1UVA; 1UVB; 1UVC; 2ALG; 2B5S; 2LJO; 3GSH;

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