Entry: PS00597

General information about the entry

Entry name [info] PLANT_LTP
Accession [info] PS00597
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); MAY-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00516

Name and characterization of the entry

Description [info] Plant lipid transfer proteins signature.
Pattern [info]
[LIVM]-[PA]-x(2)-C-x(1,2)-[LIVM]-x(1,2)-[LIVMST]-x-[LIVMFY]-x(1,2)-
[LIVMF]-[STRD]-x(3)-[DN]-C-x(2)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_07 which contains 548'872 sequence entries.


Total number of hits 83 in 83 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 21
Number of 'partial' sequences 16
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 79.81 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 4
Site [info] disulfide at position 16
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

LTP1_MORNI  (P85894), NLT11_PARJU (P43217), NLT12_PARJU (O04404), 
NLT13_PARJU (Q40905), NLT21_PARJU (P55958), NLT22_PARJU (O04403), 
NLT2A_ORYSJ (Q7XJ39), NLT2B_ORYSJ (Q2QYL2), NLT41_HORVU (Q43767), 
NLT42_HORVU (Q43875), NLT43_HORVU (Q42842), NLTP1_AMAHP (P83167), 
NLTP1_APIGR (E6Y8S8), NLTP1_ARATH (Q42589), NLTP1_BRANA (Q42614), 
NLTP1_GOSHI (Q42762), NLTP1_HORVU (P07597), NLTP1_LENCU (A0AT28), 
NLTP1_ORYSI (A2ZHF1), NLTP1_ORYSJ (Q0IQK9), NLTP1_PRUAR (P81651), 
NLTP1_PRUDO (P82534), NLTP1_PRUDU (Q43017), NLTP1_PRUPE (P81402), 
NLTP1_SOLLC (P27056), NLTP1_SOLPN (O24037), NLTP1_SORBI (Q43193), 
NLTP1_TOBAC (Q42952), NLTP1_VIGRR (P83434), NLTP1_WHEAT (P24296), 
NLTP2_ARATH (Q9S7I3), NLTP2_BRANA (Q42615), NLTP2_GOSHI (Q43129), 
NLTP2_LENCU (A0AT29), NLTP2_ORYSI (A2ZAT0), NLTP2_SOLCI (Q3YMR2), 
NLTP2_SOLLC (P93224), NLTP2_SOLPN (O24038), NLTP2_SORBI (Q43194), 
NLTP2_TOBAC (Q03461), NLTP3_ARATH (Q9LLR7), NLTP3_BRANA (Q42616), 
NLTP3_HORVU (Q43766), NLTP3_LENCU (A0AT30), NLTP3_ORYSI (A2ZAS9), 
NLTP3_ORYSJ (Q2QYL3), NLTP3_PRUDU (Q43019), NLTP3_VITSX (P80273), 
NLTP3_WHEAT (Q84N29), NLTP4_ARATH (Q9LLR6), NLTP4_LENCU (A0AT33), 
NLTP4_ORYSJ (O65091), NLTP5_ARATH (Q9XFS7), NLTP5_LENCU (A0AT31), 
NLTP5_VITSX (P85105), NLTP6_ARATH (Q9LDB4), NLTP6_GOSHI (O24418), 
NLTP6_LENCU (A0AT32), NLTP8_HORVU (Q43871), NLTPA_ARATH (Q9LZV9), 
NLTPA_BRAOT (Q42641), NLTPA_RICCO (P10973), NLTPB_ARATH (Q2V3C1), 
NLTPB_BRAOT (Q42642), NLTPB_RICCO (P10974), NLTPC_ARATH (Q9SCZ0), 
NLTPC_RICCO (P10975), NLTPD_BRAOT (Q43304), NLTPD_RICCO (Q43119), 
NLTP_AMACA  (P80450), NLTP_BETVU  (Q43748), NLTP_CICAR  (O23758), 
NLTP_DAUCA  (P27631), NLTP_ELECO  (P23802), NLTP_GERHY  (Q39794), 
NLTP_LYCBA  (B3A0N2), NLTP_MAIZE  (P19656), NLTP_MALDO  (Q9M5X7), 
NLTP_PINTA  (Q41073), NLTP_PRUAV  (Q9M5X8), NLTP_PYRCO  (Q9M5X6), 
NLTP_SPIOL  (P10976), SCA_LILLO   (Q9SW93)
» More

UniProtKB/Swiss-Prot
False negative sequences
21 sequences

BLT4_HORVU  (P25307), LTPG1_ARATH (Q9C7F7), LTPG2_ARATH (Q9LZH5), 
NLT2G_WHEAT (P82900), NLT2P_WHEAT (P82901), NLTL1_ORYSJ (Q6ASY2), 
NLTP1_ACTDE (P86137), NLTP1_HELAN (P82007), NLTP2_ACTDE (P85206), 
NLTP2_APIGA (P86809), NLTP2_HORVU (P20145), NLTP2_MAIZE (P83506), 
NLTP2_PRUAR (P82353), NLTP7_ARATH (Q9ZUK6), NLTP8_ARATH (Q9ZPW9), 
NLTP9_ARATH (Q6AWW0), NLTPD_ARATH (A8MQA2), NLTPE_ARATH (Q9FIT2), 
NLTPF_ARATH (Q9M0T1), NLTP_PEGHA  (B3EWH4), NLTP_VIGUN  (Q43681)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
16 sequences

AFP5_MALPA  (P83139), NLTP1_ACTCH (P85204), NLTP1_NIGSA (P86527), 
NLTP1_VITSX (P80275), NLTP2_VITSX (P33556), NLTP2_WHEAT (P39085), 
NLTP3_SOLLC (P86417), NLTP4_VITSX (P80274), NLTPB_WHEAT (P26913), 
NLTP_ARTVU  (P0C088), NLTP_CANSA  (P86838), NLTP_CITLI  (P84160), 
NLTP_CITSI  (P84161), NLTP_MUSAC  (P86333), NLTP_PINPI  (P26912), 
NLTP_RAPSA  (P29420)
» More

PDB
[Detailed view]
29 PDB

1AFH; 1BE2; 1BV2; 1BWO; 1CZ2; 1FK0; 1FK1; 1FK2; 1FK3; 1FK4; 1FK5; 1FK6; 1FK7; 1GH1; 1JTB; 1LIP; 1MID; 1MZL; 1MZM; 1RZL; 1SIY; 1T12; 1UVA; 1UVB; 1UVC; 2ALG; 2B5S; 2MAL; 3GSH
» More

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