Entry: PS00597

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General information about the entry

Entry name [info] PLANT_LTP
Accession [info] PS00597
Entry type [info] PATTERN
Date [info] DEC-1991 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00516

Name and characterization of the entry

Description [info] Plant lipid transfer proteins signature.
Pattern [info]
[LIVM]-[PA]-x(2)-C-x(1,2)-[LIVM]-x(1,2)-[LIVMST]-x-[LIVMFY]-x(1,2)-
[LIVMF]-[STRD]-x(3)-[DN]-C-x(2)-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 83 in 83 different sequences
Number of true positive hits 83 in 83 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 21
Number of 'partial' sequences 15
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 79.81 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 4
Site [info] disulfide at position 16
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
83 sequences

LTP1_MORNI  (P85894), NLT11_PARJU (P43217), NLT12_PARJU (O04404), 
NLT13_PARJU (Q40905), NLT21_PARJU (P55958), NLT22_PARJU (O04403), 
NLT2A_ORYSJ (Q7XJ39), NLT2B_ORYSJ (Q2QYL2), NLT41_HORVU (Q43767), 
NLT42_HORVU (Q43875), NLT43_HORVU (Q42842), NLTP1_AMAHP (P83167), 
NLTP1_APIGR (E6Y8S8), NLTP1_ARATH (Q42589), NLTP1_BRANA (Q42614), 
NLTP1_GOSHI (Q42762), NLTP1_HORVU (P07597), NLTP1_LENCU (A0AT28), 
NLTP1_ORYSI (A2ZHF1), NLTP1_ORYSJ (Q0IQK9), NLTP1_PRUAR (P81651), 
NLTP1_PRUDO (P82534), NLTP1_PRUDU (Q43017), NLTP1_PRUPE (P81402), 
NLTP1_SOLLC (P27056), NLTP1_SOLPN (O24037), NLTP1_SORBI (Q43193), 
NLTP1_TOBAC (Q42952), NLTP1_VIGRR (P83434), NLTP1_WHEAT (P24296), 
NLTP2_ARATH (Q9S7I3), NLTP2_BRANA (Q42615), NLTP2_GOSHI (Q43129), 
NLTP2_LENCU (A0AT29), NLTP2_ORYSI (A2ZAT0), NLTP2_SOLCI (Q3YMR2), 
NLTP2_SOLLC (P93224), NLTP2_SOLPN (O24038), NLTP2_SORBI (Q43194), 
NLTP2_TOBAC (Q03461), NLTP3_ARATH (Q9LLR7), NLTP3_BRANA (Q42616), 
NLTP3_HORVU (Q43766), NLTP3_LENCU (A0AT30), NLTP3_ORYSI (A2ZAS9), 
NLTP3_ORYSJ (Q2QYL3), NLTP3_PRUDU (Q43019), NLTP3_VITSX (P80273), 
NLTP3_WHEAT (Q84N29), NLTP4_ARATH (Q9LLR6), NLTP4_LENCU (A0AT33), 
NLTP4_ORYSJ (O65091), NLTP5_ARATH (Q9XFS7), NLTP5_LENCU (A0AT31), 
NLTP5_VITSX (P85105), NLTP6_ARATH (Q9LDB4), NLTP6_GOSHI (O24418), 
NLTP6_LENCU (A0AT32), NLTP8_HORVU (Q43871), NLTPA_ARATH (Q9LZV9), 
NLTPA_BRAOT (Q42641), NLTPA_RICCO (P10973), NLTPB_ARATH (Q2V3C1), 
NLTPB_BRAOT (Q42642), NLTPB_RICCO (P10974), NLTPC_ARATH (Q9SCZ0), 
NLTPC_RICCO (P10975), NLTPD_BRAOT (Q43304), NLTPD_RICCO (Q43119), 
NLTP_AMACA  (P80450), NLTP_BETVU  (Q43748), NLTP_CICAR  (O23758), 
NLTP_DAUCA  (P27631), NLTP_ELECO  (P23802), NLTP_GERHY  (Q39794), 
NLTP_LYCBA  (B3A0N2), NLTP_MAIZE  (P19656), NLTP_MALDO  (Q9M5X7), 
NLTP_PINTA  (Q41073), NLTP_PRUAV  (Q9M5X8), NLTP_PYRCO  (Q9M5X6), 
NLTP_SPIOL  (P10976), SCA_LILLO   (Q9SW93)
» More

UniProtKB/Swiss-Prot
False negative sequences
21 sequences

BLT4_HORVU  (P25307), LTPG1_ARATH (Q9C7F7), LTPG2_ARATH (Q9LZH5), 
NLT2G_WHEAT (P82900), NLT2P_WHEAT (P82901), NLTL1_ORYSJ (Q6ASY2), 
NLTP1_ACTDE (P86137), NLTP1_HELAN (P82007), NLTP2_ACTDE (P85206), 
NLTP2_APIGA (P86809), NLTP2_HORVU (P20145), NLTP2_MAIZE (P83506), 
NLTP2_PRUAR (P82353), NLTP7_ARATH (Q9ZUK6), NLTP8_ARATH (Q9ZPW9), 
NLTP9_ARATH (Q6AWW0), NLTPD_ARATH (A8MQA2), NLTPE_ARATH (Q9FIT2), 
NLTPF_ARATH (Q9M0T1), NLTP_PEGHA  (B3EWH4), NLTP_VIGUN  (Q43681)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
15 sequences

AFP5_MALPA  (P83139), NLTP1_ACTCH (P85204), NLTP1_NIGSA (P86527), 
NLTP1_VITSX (P80275), NLTP2_VITSX (P33556), NLTP2_WHEAT (P39085), 
NLTP4_VITSX (P80274), NLTPB_WHEAT (P26913), NLTP_ARTVU  (P0C088), 
NLTP_CANSA  (P86838), NLTP_CITLI  (P84160), NLTP_CITSI  (P84161), 
NLTP_MUSAC  (P86333), NLTP_PINPI  (P26912), NLTP_RAPSA  (P29420)
» More

PDB
[Detailed view]
29 PDB

1AFH; 1BE2; 1BV2; 1BWO; 1CZ2; 1FK0; 1FK1; 1FK2; 1FK3; 1FK4; 1FK5; 1FK6; 1FK7; 1GH1; 1JTB; 1LIP; 1MID; 1MZL; 1MZM; 1RZL; 1SIY; 1T12; 1UVA; 1UVB; 1UVC; 2ALG; 2B5S; 2MAL; 3GSH
» More

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