Entry: PS00622

General information about the entry
Entry name HTH_LUXR_1
Accession number PS00622
Entry type PATTERN
Date JUN-1992 (CREATED); APR-2006 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00542
Name and characterization of the entry
DescriptionLuxR-type HTH domain signature.
Pattern [GDC]-x(2)-[NSTAVY]-x(2)-[IV]-[GSTA]-x(2)-[LIVMFYWCT]-x-[LIVMFYWCR]-x(3)- [NST]-[LIVM]-x(2)-{T}-x(2)-[NRHSA]-[LIVMSTA]-x(2)-[KR].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 182 hits in 182 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 167 hits in 167 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 15 hits in 15 different sequences
  • Number of known missed hits: 69
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 91.76 %
  • Recall (true hits / (true hits + false negatives)): 70.76 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
AGMR_PSEAE  (P29369), AGMR_PSEPU  (A8R3T0), BVGA_BORBR  (P0A4H3), 
BVGA_BORPA  (P0A4H4), BVGA_BORPE  (P0A4H2), CARR_PECCC  (Q46751), 
CMPA_BACSU  (P14204), CSGD_ECOLI  (P52106), CSGD_SALTY  (O54294), 
DCTR_RHOCA  (P37740), DEGU_BACSU  (P13800), DEGU_BREBE  (P54662), 
DEVR_MYCTU  (P95193), ECHR_ERWCH  (Q46967), ECNR_CITFR  (O69280), 
ESAR_ERWST  (P54293), EVGA_ECO57  (P0ACZ6), EVGA_ECOL6  (P0ACZ5), 
EVGA_ECOLI  (P0ACZ4), EVGA_SHIFL  (P0ACZ7), EXPR_DICD3  (Q47188), 
EXPR_PECSS  (Q47189), FIMZ_ECO57  (P0AEL9), FIMZ_ECOLI  (P0AEL8), 
FIMZ_SALTY  (P26319), FIXJ_AZOC5  (P26487), FIXJ_BRAJA  (P23221), 
FIXJ_RHIME  (P10958), GACA_PSEAE  (Q51373), GACA_PSEFL  (P32967), 
GACA_PSEU2  (Q52376), GACA_PSEVI  (P95582), GERE_BACSU  (P11470), 
LASR_PSEAE  (P25084), LIAR_BACSU  (O32197), LUXR_VIBFI  (P12746), 
LUXS_VIBF1  (P35327), MALT_CITK8  (A8AQX2), MALT_CROS8  (A7ME76), 
MALT_ECO24  (A7ZSU8), MALT_ECO27  (B7UKC3), MALT_ECO45  (B7MDP4), 
MALT_ECO55  (B7L4U8), MALT_ECO57  (Q8X701), MALT_ECO5E  (B5YTW9), 
MALT_ECO7I  (B7NMI3), MALT_ECO81  (B7N1J6), MALT_ECO8A  (B7M2H9), 
MALT_ECOBW  (C4ZVX0), MALT_ECODH  (B1X764), MALT_ECOHS  (A8A5M7), 
MALT_ECOK1  (A1AGU2), MALT_ECOL5  (Q0TC49), MALT_ECOL6  (Q8CXX5), 
MALT_ECOLC  (B1IP47), MALT_ECOLI  (P06993), MALT_ECOLU  (B7NE23), 
MALT_ECOSE  (B6I2Y2), MALT_ECOSM  (B1LI79), MALT_ECOUT  (Q1R5L6), 
MALT_ENT38  (A4WFK6), MALT_ESCF3  (B7LSC1), MALT_KLEP3  (B5XTR7), 
MALT_KLEP7  (A6TF41), MALT_PHOLL  (Q7N976), MALT_SALA4  (B5F8N2), 
MALT_SALAR  (A9MMA9), MALT_SALCH  (Q57IV9), MALT_SALDC  (B5FKD6), 
MALT_SALEP  (B5R375), MALT_SALG2  (B5R7J9), MALT_SALHS  (B4TKU2), 
MALT_SALNS  (B4SVL9), MALT_SALPA  (Q5PM00), MALT_SALPB  (A9MTT7), 
MALT_SALPK  (B5BHH3), MALT_SALSV  (B4TY75), MALT_SALTI  (Q8Z227), 
MALT_SALTY  (Q8ZLI3), MALT_SERP5  (A8GKU0), MALT_SHIBS  (Q31VL4), 
MALT_SHIF8  (Q0SZP7), MALT_SHISS  (Q3YWK7), MALT_VIBCH  (Q9KNF3), 
MALT_VIBHB  (A7N5N6), MALT_VIBPA  (Q87FQ5), MALT_VIBVU  (Q8D4P3), 
MALT_VIBVY  (Q7MG94), MALT_YERE8  (A1JSF2), MALT_YERP3  (A7FNW4), 
MALT_YERPA  (Q1C2L4), MALT_YERPB  (B2K5W2), MALT_YERPE  (Q8ZJI2), 
MALT_YERPP  (A4TGR4), MALT_YERPS  (Q664J3), MALT_YERPY  (B1JHZ0), 
MOAR_ENTAE  (P54794), NARL_ECO57  (P0AF30), NARL_ECOL6  (P0AF29), 
NARL_ECOLI  (P0AF28), NARL_SHIFL  (P0AF31), NARP_ECOLI  (P31802), 
NARP_HAEIN  (P44845), NODW_BRAJA  (P15940), NREC_STAA1  (A7X623), 
NREC_STAA2  (A6U4C0), NREC_STAA3  (Q2FEA6), NREC_STAA8  (Q2FVM7), 
NREC_STAA9  (A5IVH2), NREC_STAAB  (Q2YZ42), NREC_STAAC  (Q5HDG5), 
NREC_STAAE  (A6QJN1), NREC_STAAM  (Q99RN8), NREC_STAAN  (Q7A3U5), 
NREC_STAAR  (Q6GE42), NREC_STAAS  (Q6G6T0), NREC_STAAT  (A8Z580), 
NREC_STAAW  (Q7A029), NREC_STACT  (Q7WZY4), NREC_STAEQ  (Q5HLK6), 
NREC_STAES  (Q8CN75), NREC_STAHJ  (Q4L8Q6), PHZR_PSECL  (P54303), 
PHZR_PSEFL  (Q51786), RCSA_ECO57  (P69406), RCSA_ECOLI  (P69405), 
RCSA_ENTAE  (P05338), RCSA_ERWAM  (P20098), RCSA_ERWST  (P27488), 
RCSA_SALTI  (Q56083), RCSA_SALTY  (P54698), RCSB_ECO57  (P69409), 
RCSB_ECOL6  (P69408), RCSB_ECOLI  (P69407), RCSB_SALTI  (Q56127), 
RCSB_SALTY  (P58663), RCSB_SHIFL  (P69410), RHIR_RHILV  (Q03316), 
RHLR_PSEAE  (P54292), SDIA_ECOLI  (P07026), SGAR_HYPME  (P56644), 
SOLR_RALSL  (O30919), SOLR_RALSO  (P58590), TDIR_THAAR  (O87940), 
TRPO_PSEAE  (P24908), TTRR_SALTY  (Q7CQM8), UHPA_ECO57  (P0AGA8), 
UHPA_ECOL6  (P0AGA7), UHPA_ECOLI  (P0AGA6), UHPA_SALTY  (P27667), 
UHPA_SHIFL  (P0AGA9), UVRY_ECO57  (P66798), UVRY_ECOL6  (P66797), 
UVRY_ECOLI  (P0AED5), UVRY_SHIFL  (P0AED6), Y4QH_RHISN  (P55629), 
Y890_MYCTU  (Q10550), Y914_MYCBO  (P59969), YDFI_BACSU  (P96686), 
YENR_YEREN  (P54295), YEXN_AERSA  (P45785), YFIK_BACSU  (P94439), 
YGEK_ECO57  (P58664), YGEK_ECOLI  (Q46791), YHCZ_BACSU  (O07528), 
YHJB_ECOLI  (P37640), YXJL_BACSU  (P55184)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
AHYR_AERHY  (P0A3J5), AHYR_AERSA  (P0A3J6), ALKS_ALCBS  (Q0VKZ4), 
ALKS_PSEOL  (P17051), ALKS_PSEPU  (Q9L4M7), BGLJ_ECOLI  (P39404), 
BJAR1_BRAJA (Q89VI3), BRPA_STRHY  (Q01108), DCTR_ECO57  (Q8X5P3), 
DCTR_ECOL6  (Q8FCK2), DCTR_ECOLI  (P37195), DCTR_SHIFL  (Q83J60), 
DESR_BACSU  (O34723), EXAE_PSEPU  (A8R3S7), GADE_ECO57  (P63206), 
GADE_ECOL6  (P63205), GADE_ECOLI  (P63204), GADE_SHIFL  (P63207), 
MATA_ECO24  (A7ZI28), MATA_ECO55  (B7L425), MATA_ECO57  (Q8X6I1), 
MATA_ECO5E  (B5Z1N3), MATA_ECO81  (B7MP71), MATA_ECODH  (B1XE36), 
MATA_ECOHS  (A7ZWT2), MATA_ECOK1  (A1A7X7), MATA_ECOKI  (Q9AME2), 
MATA_ECOL5  (Q0TKZ0), MATA_ECOL6  (Q8FKL2), MATA_ECOLC  (B1J0X8), 
MATA_ECOLI  (P71301), MATA_ECOLU  (B7N8J2), MATA_ECOSE  (B6I082), 
MATA_ECOSM  (B1LHW0), MATA_ECOUT  (Q1RFQ3), MATA_KLEP3  (B5Y159), 
MATA_KLEP7  (A6T571), MATA_SHIBS  (Q325R5), MOXX_PARDE  (P29904), 
NARL_MYCTU  (O53856), RAIR_RHIET  (O54452), TRAR_AGRT5  (P54294), 
TRAR_AGRVI  (P33909), TRAR_RHIRD  (P33905), TRAR_RHISN  (P55407), 
VANR_VIBAN  (P74946), VJBR_BRUA2  (Q2YJ50), VJBR_BRUAB  (Q579W9), 
VJBR_BRUME  (Q8YAY5), VJBR_BRUO2  (A5VTN1), VJBR_BRUSU  (Q8FXF9), 
VRAR_STAA1  (P0C0Z1), VRAR_STAAC  (Q5HEP0), VRAR_STAAM  (Q7A2Q1), 
VRAR_STAAN  (Q7A4R9), VRAR_STAAR  (Q6GFH3), VRAR_STAAS  (Q6G850), 
VRAR_STAAW  (Q7A0I0), VRAR_STAEQ  (Q5HN50), VRAR_STAES  (Q8CNP9), 
VRAR_STAHJ  (Q4L7J5), VRAR_STAS1  (Q49YS9), YCF29_CYAPA (P48359), 
YCF29_GUITH (O78417), YCF29_PORPU (P51343), YCF29_PORYE (Q1XDE4), 
YJJQ_ECOLI  (P0ADD7), YUAB_ECOLI  (Q9JMT8), YUKR_YERRU  (O87971)
False positive hits (sequences which do not belong to the set under consideration):
ANS1B_DANRE (A5PMU4), GLMU_STAA3  (Q2FJE2), GLMU_STAA8  (Q2G0S3), 
GLMU_STAAB  (Q2YVU6), GLMU_STAAC  (Q5HIH6), GLMU_STAAM  (Q99WA4), 
GLMU_STAAN  (Q7A7B4), GLMU_STAAR  (Q6GJH2), GLMU_STAAS  (Q6GBY9), 
GLMU_STAAW  (Q8NXZ7), K1549_HUMAN (Q9HCM3), K1549_MOUSE (Q68FD9), 
RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), Y170_LACJO  (P60951)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1A04; 1FSE; 1RNL; 1X3U; 1ZLK; 2KRF; 3C3W; 3C57; 3ULQ;

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View entry in raw text format (no links)
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