Entry: PS00622

General information about the entry

Entry name [info] HTH_LUXR_1
Accession [info] PS00622
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00542

Name and characterization of the entry

Description [info] LuxR-type HTH domain signature.
Pattern [info]
[GDC]-x(2)-[NSTAVY]-x(2)-[IV]-[GSTA]-x(2)-[LIVMFYWCT]-x-[LIVMFYWCR]-x(3)-
[NST]-[LIVM]-x(2)-{T}-x(2)-[NRHSA]-[LIVMSTA]-x(2)-[KR].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 186 in 186 different sequences
Number of true positive hits 171 in 171 different sequences
Number of 'unknown' hits 0
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 77
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 91.94 %
Recall (true positives / (true positives + false negatives)) 68.95 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
171 sequences

AGMR_PSEAE  (P29369    ), AGMR_PSEPU  (A8R3T0    ), BVGA_BORBR  (P0A4H3    ), 
BVGA_BORPA  (P0A4H4    ), BVGA_BORPE  (P0A4H2    ), CARR_PECCC  (Q46751    ), 
CMPA_BACSU  (P14204    ), CSGD_ECOLI  (P52106    ), CSGD_SALTY  (O54294    ), 
DCTR_RHOCA  (P37740    ), DEGU_BACSU  (P13800    ), DEGU_BREBE  (P54662    ), 
DEVR_MYCTO  (P9WMF8    ), DEVR_MYCTU  (P9WMF9    ), ECHR_DICCH  (Q46967    ), 
ECNR_CITFR  (O69280    ), ESAR_PANSE  (P54293    ), EVGA_ECO57  (P0ACZ6    ), 
EVGA_ECOL6  (P0ACZ5    ), EVGA_ECOLI  (P0ACZ4    ), EVGA_SHIFL  (P0ACZ7    ), 
EXPR_DICD3  (Q47188    ), EXPR_PECSS  (Q47189    ), FIMZ_ECO57  (P0AEL9    ), 
FIMZ_ECOLI  (P0AEL8    ), FIMZ_SALTY  (P26319    ), FIXJ_AZOC5  (P26487    ), 
FIXJ_BRADU  (P23221    ), FIXJ_RHIME  (P10958    ), GACA_PSEAE  (Q51373    ), 
GACA_PSEPH  (P32967    ), GACA_PSEU2  (Q52376    ), GACA_PSEVI  (P95582    ), 
GERE_BACSU  (P11470    ), LASR_PSEAE  (P25084    ), LIAR_BACSU  (O32197    ), 
LUXR_ALIFS  (P12746    ), LUXS_VIBF1  (P35327    ), MALT_CITK8  (A8AQX2    ), 
MALT_CROS8  (A7ME76    ), MALT_ECO24  (A7ZSU8    ), MALT_ECO27  (B7UKC3    ), 
MALT_ECO45  (B7MDP4    ), MALT_ECO55  (B7L4U8    ), MALT_ECO57  (Q8X701    ), 
MALT_ECO5E  (B5YTW9    ), MALT_ECO7I  (B7NMI3    ), MALT_ECO81  (B7N1J6    ), 
MALT_ECO8A  (B7M2H9    ), MALT_ECOBW  (C4ZVX0    ), MALT_ECODH  (B1X764    ), 
MALT_ECOHS  (A8A5M7    ), MALT_ECOK1  (A1AGU2    ), MALT_ECOL5  (Q0TC49    ), 
MALT_ECOL6  (Q8CXX5    ), MALT_ECOLC  (B1IP47    ), MALT_ECOLI  (P06993    ), 
MALT_ECOLU  (B7NE23    ), MALT_ECOSE  (B6I2Y2    ), MALT_ECOSM  (B1LI79    ), 
MALT_ECOUT  (Q1R5L6    ), MALT_ENT38  (A4WFK6    ), MALT_ESCF3  (B7LSC1    ), 
MALT_KLEP3  (B5XTR7    ), MALT_KLEP7  (A6TF41    ), MALT_PHOLL  (Q7N976    ), 
MALT_SALA4  (B5F8N2    ), MALT_SALAR  (A9MMA9    ), MALT_SALCH  (Q57IV9    ), 
MALT_SALDC  (B5FKD6    ), MALT_SALEP  (B5R375    ), MALT_SALG2  (B5R7J9    ), 
MALT_SALHS  (B4TKU2    ), MALT_SALNS  (B4SVL9    ), MALT_SALPA  (Q5PM00    ), 
MALT_SALPB  (A9MTT7    ), MALT_SALPK  (B5BHH3    ), MALT_SALSV  (B4TY75    ), 
MALT_SALTI  (Q8Z227    ), MALT_SALTY  (Q8ZLI3    ), MALT_SERP5  (A8GKU0    ), 
MALT_SHIBS  (Q31VL4    ), MALT_SHIF8  (Q0SZP7    ), MALT_SHISS  (Q3YWK7    ), 
MALT_VIBCB  (A7N5N6    ), MALT_VIBCH  (Q9KNF3    ), MALT_VIBPA  (Q87FQ5    ), 
MALT_VIBVU  (Q8D4P3    ), MALT_VIBVY  (Q7MG94    ), MALT_YERE8  (A1JSF2    ), 
MALT_YERP3  (A7FNW4    ), MALT_YERPA  (Q1C2L4    ), MALT_YERPB  (B2K5W2    ), 
MALT_YERPE  (Q8ZJI2    ), MALT_YERPP  (A4TGR4    ), MALT_YERPS  (Q664J3    ), 
MALT_YERPY  (B1JHZ0    ), MOAR_ENTAE  (P54794    ), NARL_ECO57  (P0AF30    ), 
NARL_ECOL6  (P0AF29    ), NARL_ECOLI  (P0AF28    ), NARL_SHIFL  (P0AF31    ), 
NARP_ECOLI  (P31802    ), NARP_HAEIN  (P44845    ), NODW_BRADU  (P15940    ), 
NREC_STAA1  (A7X623    ), NREC_STAA2  (A6U4C0    ), NREC_STAA3  (Q2FEA6    ), 
NREC_STAA8  (Q2FVM7    ), NREC_STAA9  (A5IVH2    ), NREC_STAAB  (Q2YZ42    ), 
NREC_STAAC  (Q5HDG5    ), NREC_STAAE  (A6QJN1    ), NREC_STAAM  (Q99RN8    ), 
NREC_STAAN  (Q7A3U5    ), NREC_STAAR  (Q6GE42    ), NREC_STAAS  (Q6G6T0    ), 
NREC_STAAT  (A8Z580    ), NREC_STAAW  (Q7A029    ), NREC_STACT  (Q7WZY4    ), 
NREC_STAEQ  (Q5HLK6    ), NREC_STAES  (Q8CN75    ), NREC_STAHJ  (Q4L8Q6    ), 
PHZR_PSECL  (P54303    ), PHZR_PSEFL  (Q51786    ), RCSA_ECO57  (P69406    ), 
RCSA_ECOLI  (P0DMC9    ), RCSA_ECOLX  (P0DMD0    ), RCSA_ENTAE  (P05338    ), 
RCSA_ERWAM  (P20098    ), RCSA_PANSE  (P27488    ), RCSA_SALTI  (Q56083    ), 
RCSA_SALTY  (P54698    ), RCSB_ECO57  (P69409    ), RCSB_ECOL6  (P69408    ), 
RCSB_ECOLI  (P0DMC7    ), RCSB_ECOLX  (P0DMC8    ), RCSB_SALTI  (Q56127    ), 
RCSB_SALTY  (P58663    ), RCSB_SHIFL  (P69410    ), RHIR_RHILV  (Q03316    ), 
RHLR_PSEAE  (P54292    ), SDIA_ECOLI  (P07026    ), SGAR_HYPME  (P56644    ), 
SOLR_RALSL  (O30919    ), SOLR_RALSO  (P58590    ), TDIR_THAAR  (O87940    ), 
TRPO_PSEAE  (P24908    ), TTRR_SALTY  (Q7CQM8    ), UHPA_ECO57  (P0AGA8    ), 
UHPA_ECOL6  (P0AGA7    ), UHPA_ECOLI  (P0AGA6    ), UHPA_SALTY  (P27667    ), 
UHPA_SHIFL  (P0AGA9    ), UVRY_ECO57  (P66798    ), UVRY_ECOL6  (P66797    ), 
UVRY_ECOLI  (P0AED5    ), UVRY_SHIFL  (P0AED6    ), Y4QH_RHISN  (P55629    ), 
Y890_MYCTO  (P9WMG0    ), Y890_MYCTU  (P9WMG1    ), Y914_MYCBO  (P59969    ), 
YDFI_BACSU  (P96686    ), YENR_YEREN  (P54295    ), YEXN_AERSA  (P45785    ), 
YFIK_BACSU  (P94439    ), YGEK_ECO57  (P58664    ), YGEK_ECOLI  (Q46791    ), 
YHCZ_BACSU  (O07528    ), YHJB_ECOLI  (P37640    ), YXJL_BACSU  (P55184    )
» more

UniProtKB/Swiss-Prot
False negative sequences
77 sequences

AHYR_AERHY  (P0A3J5    ), ALKS_ALCBS  (Q0VKZ4    ), ALKS_PSEOL  (P17051    ), 
ALKS_PSEPU  (Q9L4M7    ), ASAR_AERSA  (P0A3J6    ), BGLJ_ECOLI  (P39404    ), 
BJAR1_BRADU (Q89VI3    ), BRPA_STRHY  (Q01108    ), DCTR_ECO57  (Q8X5P3    ), 
DCTR_ECOL6  (Q8FCK2    ), DCTR_ECOLI  (P37195    ), DCTR_SHIFL  (Q83J60    ), 
DESR_BACSU  (O34723    ), ECPR_ECO24  (A7ZI28    ), ECPR_ECO27  (B7UJE2    ), 
ECPR_ECO55  (B7L425    ), ECPR_ECO57  (Q8X6I1    ), ECPR_ECO5E  (B5Z1N3    ), 
ECPR_ECO81  (B7MP71    ), ECPR_ECODH  (B1XE36    ), ECPR_ECOHS  (A7ZWT2    ), 
ECPR_ECOK1  (A1A7X7    ), ECPR_ECOKI  (Q9AME2    ), ECPR_ECOL5  (Q0TKZ0    ), 
ECPR_ECOL6  (Q8FKL2    ), ECPR_ECOLC  (B1J0X8    ), ECPR_ECOLI  (P71301    ), 
ECPR_ECOLU  (B7N8J2    ), ECPR_ECOSE  (B6I082    ), ECPR_ECOSM  (B1LHW0    ), 
ECPR_ECOUT  (Q1RFQ3    ), ECPR_KLEP3  (B5Y159    ), ECPR_KLEP7  (A6T571    ), 
ECPR_SHIBS  (Q325R5    ), EXAE_PSEPU  (A8R3S7    ), GADE_ECO57  (P63206    ), 
GADE_ECOL6  (P63205    ), GADE_ECOLI  (P63204    ), GADE_SHIFL  (P63207    ), 
MCTR_RHIL3  (Q1M7A0    ), MOXX_PARDE  (P29904    ), NARL_MYCTO  (P9WGM4    ), 
NARL_MYCTU  (P9WGM5    ), RAIR_RHIET  (O54452    ), RPAR_RHOPA  (Q6NCZ5    ), 
TMOT_PSEME  (Q8KR08    ), TODT_PSEP1  (A5W4E2    ), TODT_PSEPT  (I7CA98    ), 
TODT_PSEPU  (Q3LWR6    ), TRAR_AGRFC  (P54294    ), TRAR_AGRVI  (P33909    ), 
TRAR_RHIRD  (P33905    ), TRAR_RHISN  (P55407    ), VANR_VIBAN  (P74946    ), 
VJBR_BRUA2  (Q2YJ50    ), VJBR_BRUAB  (Q579W9    ), VJBR_BRUME  (Q8YAY5    ), 
VJBR_BRUO2  (A5VTN1    ), VJBR_BRUSU  (Q8FXF9    ), VRAR_STAA1  (P0C0Z1    ), 
VRAR_STAAC  (Q5HEP0    ), VRAR_STAAM  (Q7A2Q1    ), VRAR_STAAN  (Q7A4R9    ), 
VRAR_STAAR  (Q6GFH3    ), VRAR_STAAS  (Q6G850    ), VRAR_STAAW  (Q7A0I0    ), 
VRAR_STAEQ  (Q5HN50    ), VRAR_STAES  (Q8CNP9    ), VRAR_STAHJ  (Q4L7J5    ), 
VRAR_STAS1  (Q49YS9    ), YCF29_CYAPA (P48359    ), YCF29_GUITH (O78417    ), 
YCF29_PORPU (P51343    ), YCF29_PYRYE (Q1XDE4    ), YJJQ_ECOLI  (P0ADD7    ), 
YUAB_ECOLI  (Q9JMT8    ), YUKR_YERRU  (O87971    )
» more

UniProtKB/Swiss-Prot
False positive sequences
15 sequences

ANS1B_DANRE (A5PMU4    ), GLMU_STAA3  (Q2FJE2    ), GLMU_STAA8  (Q2G0S3    ), 
GLMU_STAAB  (Q2YVU6    ), GLMU_STAAC  (Q5HIH6    ), GLMU_STAAM  (Q99WA4    ), 
GLMU_STAAN  (Q7A7B4    ), GLMU_STAAR  (Q6GJH2    ), GLMU_STAAS  (Q6GBY9    ), 
GLMU_STAAW  (Q8NXZ7    ), K1549_HUMAN (Q9HCM3    ), K1549_MOUSE (Q68FD9    ), 
RPSH_BACLI  (P02964    ), RPSH_BACSU  (P17869    ), Y170_LACJO  (P60951    )
» more

PDB
[Detailed view]
12 PDB

1A04; 1FSE; 1RNL; 1X3U; 1ZLK; 2KRF; 3C3W; 3C57; 3ULQ; 4LFU; 4LGW; 5F64

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