To improve security and privacy, we are moving our web pages and services from HTTP to HTTPS.
To give users of web services time to transition to HTTPS, we will support separate HTTP and HTTPS services until the end of 2017.
From January 2018 most HTTP traffic will be automatically redirected to HTTPS. [more...]
View this page in https
Entry: PS00622

General information about the entry

Entry name [info] HTH_LUXR_1
Accession [info] PS00622
Entry type [info] PATTERN
Date [info] 01-JUN-1992 CREATED; 01-APR-2006 DATA UPDATE; 22-NOV-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00542

Name and characterization of the entry

Description [info] LuxR-type HTH domain signature.
Pattern [info]
[GDC]-x(2)-[NSTAVY]-x(2)-[IV]-[GSTA]-x(2)-[LIVMFYWCT]-x-[LIVMFYWCR]-x(3)-
[NST]-[LIVM]-x(2)-{T}-x(2)-[NRHSA]-[LIVMSTA]-x(2)-[KR].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_11 which contains 556'196 sequence entries.


Total number of hits 187 in 187 different sequences
Number of true positive hits 172 in 172 different sequences
Number of 'unknown' hits 0
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 77
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 91.98 %
Recall (true positives / (true positives + false negatives)) 69.08 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
172 sequences

AGMR_PSEAE  (P29369    ), AGMR_PSEPU  (A8R3T0    ), ANOR_ACINO  (A0A0N8YGA2), 
BVGA_BORBR  (P0A4H3    ), BVGA_BORPA  (P0A4H4    ), BVGA_BORPE  (P0A4H2    ), 
CARR_PECCC  (Q46751    ), CMPA_BACSU  (P14204    ), CSGD_ECOLI  (P52106    ), 
CSGD_SALTY  (O54294    ), DCTR_RHOCA  (P37740    ), DEGU_BACSU  (P13800    ), 
DEGU_BREBE  (P54662    ), DEVR_MYCTO  (P9WMF8    ), DEVR_MYCTU  (P9WMF9    ), 
ECHR_DICCH  (Q46967    ), ECNR_CITFR  (O69280    ), ESAR_PANSE  (P54293    ), 
EVGA_ECO57  (P0ACZ6    ), EVGA_ECOL6  (P0ACZ5    ), EVGA_ECOLI  (P0ACZ4    ), 
EVGA_SHIFL  (P0ACZ7    ), EXPR_DICD3  (Q47188    ), EXPR_PECSS  (Q47189    ), 
FIMZ_ECO57  (P0AEL9    ), FIMZ_ECOLI  (P0AEL8    ), FIMZ_SALTY  (P26319    ), 
FIXJ_AZOC5  (P26487    ), FIXJ_BRADU  (P23221    ), FIXJ_RHIME  (P10958    ), 
GACA_PSEAE  (Q51373    ), GACA_PSEPH  (P32967    ), GACA_PSEU2  (Q52376    ), 
GACA_PSEVI  (P95582    ), GERE_BACSU  (P11470    ), LASR_PSEAE  (P25084    ), 
LIAR_BACSU  (O32197    ), LUXR_ALIFS  (P12746    ), LUXS_VIBF1  (P35327    ), 
MALT_CITK8  (A8AQX2    ), MALT_CROS8  (A7ME76    ), MALT_ECO24  (A7ZSU8    ), 
MALT_ECO27  (B7UKC3    ), MALT_ECO45  (B7MDP4    ), MALT_ECO55  (B7L4U8    ), 
MALT_ECO57  (Q8X701    ), MALT_ECO5E  (B5YTW9    ), MALT_ECO7I  (B7NMI3    ), 
MALT_ECO81  (B7N1J6    ), MALT_ECO8A  (B7M2H9    ), MALT_ECOBW  (C4ZVX0    ), 
MALT_ECODH  (B1X764    ), MALT_ECOHS  (A8A5M7    ), MALT_ECOK1  (A1AGU2    ), 
MALT_ECOL5  (Q0TC49    ), MALT_ECOL6  (Q8CXX5    ), MALT_ECOLC  (B1IP47    ), 
MALT_ECOLI  (P06993    ), MALT_ECOLU  (B7NE23    ), MALT_ECOSE  (B6I2Y2    ), 
MALT_ECOSM  (B1LI79    ), MALT_ECOUT  (Q1R5L6    ), MALT_ENT38  (A4WFK6    ), 
MALT_ESCF3  (B7LSC1    ), MALT_KLEP3  (B5XTR7    ), MALT_KLEP7  (A6TF41    ), 
MALT_PHOLL  (Q7N976    ), MALT_SALA4  (B5F8N2    ), MALT_SALAR  (A9MMA9    ), 
MALT_SALCH  (Q57IV9    ), MALT_SALDC  (B5FKD6    ), MALT_SALEP  (B5R375    ), 
MALT_SALG2  (B5R7J9    ), MALT_SALHS  (B4TKU2    ), MALT_SALNS  (B4SVL9    ), 
MALT_SALPA  (Q5PM00    ), MALT_SALPB  (A9MTT7    ), MALT_SALPK  (B5BHH3    ), 
MALT_SALSV  (B4TY75    ), MALT_SALTI  (Q8Z227    ), MALT_SALTY  (Q8ZLI3    ), 
MALT_SERP5  (A8GKU0    ), MALT_SHIBS  (Q31VL4    ), MALT_SHIF8  (Q0SZP7    ), 
MALT_SHISS  (Q3YWK7    ), MALT_VIBCB  (A7N5N6    ), MALT_VIBCH  (Q9KNF3    ), 
MALT_VIBPA  (Q87FQ5    ), MALT_VIBVU  (Q8D4P3    ), MALT_VIBVY  (Q7MG94    ), 
MALT_YERE8  (A1JSF2    ), MALT_YERP3  (A7FNW4    ), MALT_YERPA  (Q1C2L4    ), 
MALT_YERPB  (B2K5W2    ), MALT_YERPE  (Q8ZJI2    ), MALT_YERPP  (A4TGR4    ), 
MALT_YERPS  (Q664J3    ), MALT_YERPY  (B1JHZ0    ), MOAR_KLEAE  (P54794    ), 
NARL_ECO57  (P0AF30    ), NARL_ECOL6  (P0AF29    ), NARL_ECOLI  (P0AF28    ), 
NARL_SHIFL  (P0AF31    ), NARP_ECOLI  (P31802    ), NARP_HAEIN  (P44845    ), 
NODW_BRADU  (P15940    ), NREC_STAA1  (A7X623    ), NREC_STAA2  (A6U4C0    ), 
NREC_STAA3  (Q2FEA6    ), NREC_STAA8  (Q2FVM7    ), NREC_STAA9  (A5IVH2    ), 
NREC_STAAB  (Q2YZ42    ), NREC_STAAC  (Q5HDG5    ), NREC_STAAE  (A6QJN1    ), 
NREC_STAAM  (Q99RN8    ), NREC_STAAN  (Q7A3U5    ), NREC_STAAR  (Q6GE42    ), 
NREC_STAAS  (Q6G6T0    ), NREC_STAAT  (A8Z580    ), NREC_STAAW  (Q7A029    ), 
NREC_STACT  (Q7WZY4    ), NREC_STAEQ  (Q5HLK6    ), NREC_STAES  (Q8CN75    ), 
NREC_STAHJ  (Q4L8Q6    ), PHZR_PSECL  (P54303    ), PHZR_PSEFL  (Q51786    ), 
RCSA_ECO57  (P69406    ), RCSA_ECOLI  (P0DMC9    ), RCSA_ECOLX  (P0DMD0    ), 
RCSA_ERWAM  (P20098    ), RCSA_KLEAE  (P05338    ), RCSA_PANSE  (P27488    ), 
RCSA_SALTI  (Q56083    ), RCSA_SALTY  (P54698    ), RCSB_ECO57  (P69409    ), 
RCSB_ECOL6  (P69408    ), RCSB_ECOLI  (P0DMC7    ), RCSB_ECOLX  (P0DMC8    ), 
RCSB_SALTI  (Q56127    ), RCSB_SALTY  (P58663    ), RCSB_SHIFL  (P69410    ), 
RHIR_RHILV  (Q03316    ), RHLR_PSEAE  (P54292    ), SDIA_ECOLI  (P07026    ), 
SGAR_HYPME  (P56644    ), SOLR_RALSL  (O30919    ), SOLR_RALSO  (P58590    ), 
TDIR_THAAR  (O87940    ), TRPO_PSEAE  (P24908    ), TTRR_SALTY  (Q7CQM8    ), 
UHPA_ECO57  (P0AGA8    ), UHPA_ECOL6  (P0AGA7    ), UHPA_ECOLI  (P0AGA6    ), 
UHPA_SALTY  (P27667    ), UHPA_SHIFL  (P0AGA9    ), UVRY_ECO57  (P66798    ), 
UVRY_ECOL6  (P66797    ), UVRY_ECOLI  (P0AED5    ), UVRY_SHIFL  (P0AED6    ), 
Y4QH_SINFN  (P55629    ), Y890_MYCTO  (P9WMG0    ), Y890_MYCTU  (P9WMG1    ), 
Y914_MYCBO  (P59969    ), YDFI_BACSU  (P96686    ), YENR_YEREN  (P54295    ), 
YEXN_AERSA  (P45785    ), YFIK_BACSU  (P94439    ), YGEK_ECO57  (P58664    ), 
YGEK_ECOLI  (Q46791    ), YHCZ_BACSU  (O07528    ), YHJB_ECOLI  (P37640    ), 
YXJL_BACSU  (P55184    )
» more

UniProtKB/Swiss-Prot
False negative sequences
77 sequences

AHYR_AERHY  (P0A3J5    ), ALKS_ALCBS  (Q0VKZ4    ), ALKS_PSEOL  (P17051    ), 
ALKS_PSEPU  (Q9L4M7    ), ASAR_AERSA  (P0A3J6    ), BGLJ_ECOLI  (P39404    ), 
BJAR1_BRADU (Q89VI3    ), BRPA_STRHY  (Q01108    ), DCTR_ECO57  (Q8X5P3    ), 
DCTR_ECOL6  (Q8FCK2    ), DCTR_ECOLI  (P37195    ), DCTR_SHIFL  (Q83J60    ), 
DESR_BACSU  (O34723    ), ECPR_ECO24  (A7ZI28    ), ECPR_ECO27  (B7UJE2    ), 
ECPR_ECO55  (B7L425    ), ECPR_ECO57  (Q8X6I1    ), ECPR_ECO5E  (B5Z1N3    ), 
ECPR_ECO81  (B7MP71    ), ECPR_ECODH  (B1XE36    ), ECPR_ECOHS  (A7ZWT2    ), 
ECPR_ECOK1  (A1A7X7    ), ECPR_ECOKI  (Q9AME2    ), ECPR_ECOL5  (Q0TKZ0    ), 
ECPR_ECOL6  (Q8FKL2    ), ECPR_ECOLC  (B1J0X8    ), ECPR_ECOLI  (P71301    ), 
ECPR_ECOLU  (B7N8J2    ), ECPR_ECOSE  (B6I082    ), ECPR_ECOSM  (B1LHW0    ), 
ECPR_ECOUT  (Q1RFQ3    ), ECPR_KLEP3  (B5Y159    ), ECPR_KLEP7  (A6T571    ), 
ECPR_SHIBS  (Q325R5    ), EXAE_PSEPU  (A8R3S7    ), GADE_ECO57  (P63206    ), 
GADE_ECOL6  (P63205    ), GADE_ECOLI  (P63204    ), GADE_SHIFL  (P63207    ), 
MCTR_RHIL3  (Q1M7A0    ), MOXX_PARDE  (P29904    ), NARL_MYCTO  (P9WGM4    ), 
NARL_MYCTU  (P9WGM5    ), RAIR_RHIET  (O54452    ), RPAR_RHOPA  (Q6NCZ5    ), 
TMOT_PSEME  (Q8KR08    ), TODT_PSEP1  (A5W4E2    ), TODT_PSEPT  (I7CA98    ), 
TODT_PSEPU  (Q3LWR6    ), TRAR_AGRFC  (P54294    ), TRAR_AGRVI  (P33909    ), 
TRAR_RHIRD  (P33905    ), TRAR_SINFN  (P55407    ), VANR_VIBAN  (P74946    ), 
VJBR_BRUA2  (Q2YJ50    ), VJBR_BRUAB  (Q579W9    ), VJBR_BRUME  (Q8YAY5    ), 
VJBR_BRUO2  (A5VTN1    ), VJBR_BRUSU  (Q8FXF9    ), VRAR_STAA1  (P0C0Z1    ), 
VRAR_STAAC  (Q5HEP0    ), VRAR_STAAM  (Q7A2Q1    ), VRAR_STAAN  (Q7A4R9    ), 
VRAR_STAAR  (Q6GFH3    ), VRAR_STAAS  (Q6G850    ), VRAR_STAAW  (Q7A0I0    ), 
VRAR_STAEQ  (Q5HN50    ), VRAR_STAES  (Q8CNP9    ), VRAR_STAHJ  (Q4L7J5    ), 
VRAR_STAS1  (Q49YS9    ), YCF29_CYAPA (P48359    ), YCF29_GUITH (O78417    ), 
YCF29_PORPU (P51343    ), YCF29_PYRYE (Q1XDE4    ), YJJQ_ECOLI  (P0ADD7    ), 
YUAB_ECOLI  (Q9JMT8    ), YUKR_YERRU  (O87971    )
» more

UniProtKB/Swiss-Prot
False positive sequences
15 sequences

ANS1B_DANRE (A5PMU4    ), GLMU_STAA3  (Q2FJE2    ), GLMU_STAA8  (Q2G0S3    ), 
GLMU_STAAB  (Q2YVU6    ), GLMU_STAAC  (Q5HIH6    ), GLMU_STAAM  (Q99WA4    ), 
GLMU_STAAN  (Q7A7B4    ), GLMU_STAAR  (Q6GJH2    ), GLMU_STAAS  (Q6GBY9    ), 
GLMU_STAAW  (Q8NXZ7    ), K1549_HUMAN (Q9HCM3    ), K1549_MOUSE (Q68FD9    ), 
RPSH_BACLI  (P02964    ), RPSH_BACSU  (P17869    ), Y170_LACJO  (P60951    )
» more

PDB
[Detailed view]
12 PDB

1A04; 1FSE; 1RNL; 1X3U; 1ZLK; 2KRF; 3C3W; 3C57; 3ULQ; 4LFU; 4LGW; 5F64

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission