Entry: PS00622

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General information about the entry

Entry name [info] HTH_LUXR_1
Accession [info] PS00622
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); FEB-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00542

Name and characterization of the entry

Description [info] LuxR-type HTH domain signature.
Pattern [info]
[GDC]-x(2)-[NSTAVY]-x(2)-[IV]-[GSTA]-x(2)-[LIVMFYWCT]-x-[LIVMFYWCR]-x(3)-
[NST]-[LIVM]-x(2)-{T}-x(2)-[NRHSA]-[LIVMSTA]-x(2)-[KR].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_03 which contains 542'782 sequence entries.


Total number of hits 184 in 184 different sequences
Number of true positive hits 169 in 169 different sequences
Number of 'unknown' hits
Number of false positive hits 15 in 15 different sequences
Number of false negative sequences 73
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 91.85 %
Recall (true positives / (true positives + false negatives)) 69.83 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
169 sequences

AGMR_PSEAE  (P29369), AGMR_PSEPU  (A8R3T0), BVGA_BORBR  (P0A4H3), 
BVGA_BORPA  (P0A4H4), BVGA_BORPE  (P0A4H2), CARR_PECCC  (Q46751), 
CMPA_BACSU  (P14204), CSGD_ECOLI  (P52106), CSGD_SALTY  (O54294), 
DCTR_RHOCA  (P37740), DEGU_BACSU  (P13800), DEGU_BREBE  (P54662), 
DEVR_MYCTU  (P95193), ECHR_ERWCH  (Q46967), ECNR_CITFR  (O69280), 
ESAR_ERWST  (P54293), EVGA_ECO57  (P0ACZ6), EVGA_ECOL6  (P0ACZ5), 
EVGA_ECOLI  (P0ACZ4), EVGA_SHIFL  (P0ACZ7), EXPR_DICD3  (Q47188), 
EXPR_PECSS  (Q47189), FIMZ_ECO57  (P0AEL9), FIMZ_ECOLI  (P0AEL8), 
FIMZ_SALTY  (P26319), FIXJ_AZOC5  (P26487), FIXJ_BRADU  (P23221), 
FIXJ_RHIME  (P10958), GACA_PSEAE  (Q51373), GACA_PSEFL  (P32967), 
GACA_PSEU2  (Q52376), GACA_PSEVI  (P95582), GERE_BACSU  (P11470), 
LASR_PSEAE  (P25084), LIAR_BACSU  (O32197), LUXR_ALIFS  (P12746), 
LUXS_VIBF1  (P35327), MALT_CITK8  (A8AQX2), MALT_CROS8  (A7ME76), 
MALT_ECO24  (A7ZSU8), MALT_ECO27  (B7UKC3), MALT_ECO45  (B7MDP4), 
MALT_ECO55  (B7L4U8), MALT_ECO57  (Q8X701), MALT_ECO5E  (B5YTW9), 
MALT_ECO7I  (B7NMI3), MALT_ECO81  (B7N1J6), MALT_ECO8A  (B7M2H9), 
MALT_ECOBW  (C4ZVX0), MALT_ECODH  (B1X764), MALT_ECOHS  (A8A5M7), 
MALT_ECOK1  (A1AGU2), MALT_ECOL5  (Q0TC49), MALT_ECOL6  (Q8CXX5), 
MALT_ECOLC  (B1IP47), MALT_ECOLI  (P06993), MALT_ECOLU  (B7NE23), 
MALT_ECOSE  (B6I2Y2), MALT_ECOSM  (B1LI79), MALT_ECOUT  (Q1R5L6), 
MALT_ENT38  (A4WFK6), MALT_ESCF3  (B7LSC1), MALT_KLEP3  (B5XTR7), 
MALT_KLEP7  (A6TF41), MALT_PHOLL  (Q7N976), MALT_SALA4  (B5F8N2), 
MALT_SALAR  (A9MMA9), MALT_SALCH  (Q57IV9), MALT_SALDC  (B5FKD6), 
MALT_SALEP  (B5R375), MALT_SALG2  (B5R7J9), MALT_SALHS  (B4TKU2), 
MALT_SALNS  (B4SVL9), MALT_SALPA  (Q5PM00), MALT_SALPB  (A9MTT7), 
MALT_SALPK  (B5BHH3), MALT_SALSV  (B4TY75), MALT_SALTI  (Q8Z227), 
MALT_SALTY  (Q8ZLI3), MALT_SERP5  (A8GKU0), MALT_SHIBS  (Q31VL4), 
MALT_SHIF8  (Q0SZP7), MALT_SHISS  (Q3YWK7), MALT_VIBCB  (A7N5N6), 
MALT_VIBCH  (Q9KNF3), MALT_VIBPA  (Q87FQ5), MALT_VIBVU  (Q8D4P3), 
MALT_VIBVY  (Q7MG94), MALT_YERE8  (A1JSF2), MALT_YERP3  (A7FNW4), 
MALT_YERPA  (Q1C2L4), MALT_YERPB  (B2K5W2), MALT_YERPE  (Q8ZJI2), 
MALT_YERPP  (A4TGR4), MALT_YERPS  (Q664J3), MALT_YERPY  (B1JHZ0), 
MOAR_ENTAE  (P54794), NARL_ECO57  (P0AF30), NARL_ECOL6  (P0AF29), 
NARL_ECOLI  (P0AF28), NARL_SHIFL  (P0AF31), NARP_ECOLI  (P31802), 
NARP_HAEIN  (P44845), NODW_BRADU  (P15940), NREC_STAA1  (A7X623), 
NREC_STAA2  (A6U4C0), NREC_STAA3  (Q2FEA6), NREC_STAA8  (Q2FVM7), 
NREC_STAA9  (A5IVH2), NREC_STAAB  (Q2YZ42), NREC_STAAC  (Q5HDG5), 
NREC_STAAE  (A6QJN1), NREC_STAAM  (Q99RN8), NREC_STAAN  (Q7A3U5), 
NREC_STAAR  (Q6GE42), NREC_STAAS  (Q6G6T0), NREC_STAAT  (A8Z580), 
NREC_STAAW  (Q7A029), NREC_STACT  (Q7WZY4), NREC_STAEQ  (Q5HLK6), 
NREC_STAES  (Q8CN75), NREC_STAHJ  (Q4L8Q6), PHZR_PSECL  (P54303), 
PHZR_PSEFL  (Q51786), RCSA_ECO57  (P69406), RCSA_ECOLI  (P0DMC9), 
RCSA_ECOLX  (P0DMD0), RCSA_ENTAE  (P05338), RCSA_ERWAM  (P20098), 
RCSA_ERWST  (P27488), RCSA_SALTI  (Q56083), RCSA_SALTY  (P54698), 
RCSB_ECO57  (P69409), RCSB_ECOL6  (P69408), RCSB_ECOLI  (P0DMC7), 
RCSB_ECOLX  (P0DMC8), RCSB_SALTI  (Q56127), RCSB_SALTY  (P58663), 
RCSB_SHIFL  (P69410), RHIR_RHILV  (Q03316), RHLR_PSEAE  (P54292), 
SDIA_ECOLI  (P07026), SGAR_HYPME  (P56644), SOLR_RALSL  (O30919), 
SOLR_RALSO  (P58590), TDIR_THAAR  (O87940), TRPO_PSEAE  (P24908), 
TTRR_SALTY  (Q7CQM8), UHPA_ECO57  (P0AGA8), UHPA_ECOL6  (P0AGA7), 
UHPA_ECOLI  (P0AGA6), UHPA_SALTY  (P27667), UHPA_SHIFL  (P0AGA9), 
UVRY_ECO57  (P66798), UVRY_ECOL6  (P66797), UVRY_ECOLI  (P0AED5), 
UVRY_SHIFL  (P0AED6), Y4QH_RHISN  (P55629), Y890_MYCTU  (Q10550), 
Y914_MYCBO  (P59969), YDFI_BACSU  (P96686), YENR_YEREN  (P54295), 
YEXN_AERSA  (P45785), YFIK_BACSU  (P94439), YGEK_ECO57  (P58664), 
YGEK_ECOLI  (Q46791), YHCZ_BACSU  (O07528), YHJB_ECOLI  (P37640), 
YXJL_BACSU  (P55184)
» More

UniProtKB/Swiss-Prot
False negative sequences
73 sequences

AHYR_AERHY  (P0A3J5), AHYR_AERSA  (P0A3J6), ALKS_ALCBS  (Q0VKZ4), 
ALKS_PSEOL  (P17051), ALKS_PSEPU  (Q9L4M7), BGLJ_ECOLI  (P39404), 
BJAR1_BRADU (Q89VI3), BRPA_STRHY  (Q01108), DCTR_ECO57  (Q8X5P3), 
DCTR_ECOL6  (Q8FCK2), DCTR_ECOLI  (P37195), DCTR_SHIFL  (Q83J60), 
DESR_BACSU  (O34723), EXAE_PSEPU  (A8R3S7), GADE_ECO57  (P63206), 
GADE_ECOL6  (P63205), GADE_ECOLI  (P63204), GADE_SHIFL  (P63207), 
MATA_ECO24  (A7ZI28), MATA_ECO55  (B7L425), MATA_ECO57  (Q8X6I1), 
MATA_ECO5E  (B5Z1N3), MATA_ECO81  (B7MP71), MATA_ECODH  (B1XE36), 
MATA_ECOHS  (A7ZWT2), MATA_ECOK1  (A1A7X7), MATA_ECOKI  (Q9AME2), 
MATA_ECOL5  (Q0TKZ0), MATA_ECOL6  (Q8FKL2), MATA_ECOLC  (B1J0X8), 
MATA_ECOLI  (P71301), MATA_ECOLU  (B7N8J2), MATA_ECOSE  (B6I082), 
MATA_ECOSM  (B1LHW0), MATA_ECOUT  (Q1RFQ3), MATA_KLEP3  (B5Y159), 
MATA_KLEP7  (A6T571), MATA_SHIBS  (Q325R5), MOXX_PARDE  (P29904), 
NARL_MYCTU  (O53856), RAIR_RHIET  (O54452), TMOT_PSEME  (Q8KR08), 
TODT_PSEP1  (A5W4E2), TODT_PSEPT  (I7CA98), TODT_PSEPU  (Q3LWR6), 
TRAR_AGRT5  (P54294), TRAR_AGRVI  (P33909), TRAR_RHIRD  (P33905), 
TRAR_RHISN  (P55407), VANR_VIBAN  (P74946), VJBR_BRUA2  (Q2YJ50), 
VJBR_BRUAB  (Q579W9), VJBR_BRUME  (Q8YAY5), VJBR_BRUO2  (A5VTN1), 
VJBR_BRUSU  (Q8FXF9), VRAR_STAA1  (P0C0Z1), VRAR_STAAC  (Q5HEP0), 
VRAR_STAAM  (Q7A2Q1), VRAR_STAAN  (Q7A4R9), VRAR_STAAR  (Q6GFH3), 
VRAR_STAAS  (Q6G850), VRAR_STAAW  (Q7A0I0), VRAR_STAEQ  (Q5HN50), 
VRAR_STAES  (Q8CNP9), VRAR_STAHJ  (Q4L7J5), VRAR_STAS1  (Q49YS9), 
YCF29_CYAPA (P48359), YCF29_GUITH (O78417), YCF29_PORPU (P51343), 
YCF29_PYRYE (Q1XDE4), YJJQ_ECOLI  (P0ADD7), YUAB_ECOLI  (Q9JMT8), 
YUKR_YERRU  (O87971)
» More

UniProtKB/Swiss-Prot
False positive sequences
15 sequences

ANS1B_DANRE (A5PMU4), GLMU_STAA3  (Q2FJE2), GLMU_STAA8  (Q2G0S3), 
GLMU_STAAB  (Q2YVU6), GLMU_STAAC  (Q5HIH6), GLMU_STAAM  (Q99WA4), 
GLMU_STAAN  (Q7A7B4), GLMU_STAAR  (Q6GJH2), GLMU_STAAS  (Q6GBY9), 
GLMU_STAAW  (Q8NXZ7), K1549_HUMAN (Q9HCM3), K1549_MOUSE (Q68FD9), 
RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), Y170_LACJO  (P60951)
» More

PDB
[Detailed view]
9 PDB

1A04; 1FSE; 1RNL; 1X3U; 1ZLK; 2KRF; 3C3W; 3C57; 3ULQ

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