Entry: PS00647

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General information about the entry

Entry name [info] THYMID_PHOSPHORYLASE
Accession [info] PS00647
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); FEB-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00557

Name and characterization of the entry

Description [info] Thymidine and pyrimidine-nucleoside phosphorylases signature.
Pattern [info]
[SA]-[GS]-R-[GA]-[LIV]-x(2)-[TAP]-[GAS]-G-T-x-D-x-[LIVMF]-[EDS].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_03 which contains 542'782 sequence entries.


Total number of hits 180 in 180 different sequences
Number of true positive hits 180 in 180 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 1
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 99.45 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
180 sequences

AMPP1_ARCFU (O28928), AMPP2_ARCFU (O28927), AMPPA_HYPBU (A2BJU0), 
AMPPA_META3 (A6UUN0), AMPPA_METAC (Q8TL01), AMPPA_METB6 (A7I5N0), 
AMPPA_METBF (Q466X0), AMPPA_METBU (Q12Z64), AMPPA_METHJ (Q2FTS5), 
AMPPA_METJA (Q58081), AMPPA_METLZ (A2SPI9), AMPPA_METM5 (A4FZL0), 
AMPPA_METM6 (A9A6M7), AMPPA_METM7 (A6VIW6), AMPPA_METMA (Q8Q0P9), 
AMPPA_METMJ (A3CSY4), AMPPA_METMP (Q6M0E4), AMPPA_METTP (A0B6C9), 
AMPPA_METVS (A6URW3), AMPPA_NATPD (Q3IP82), AMPPA_PYRAB (Q9V163), 
AMPPA_PYRFU (Q8U0I2), AMPPA_PYRHO (O59251), AMPPA_THEGJ (C5A1L9), 
AMPPA_THEKO (Q5JCX3), AMPPA_THEON (B6YWT7), AMPPA_THEPD (A1RWC3), 
AMPPA_THESM (C6A2A0), PDP_BACSU   (P39142), PDP_GEOSE   (P77836), 
PDP_STAA3   (Q2FEZ3), PDP_STAA8   (Q2FWC1), PDP_STAAB   (Q2YUL7), 
PDP_STAAC   (Q5HE64), PDP_STAAM   (Q99SC3), PDP_STAAN   (Q7A4D0), 
PDP_STAAR   (Q6GET9), PDP_STAAS   (Q6G7H4), PDP_STAAW   (Q8NVF6), 
PDP_STAEQ   (Q5HM85), PDP_STAES   (Q8CNH8), PDP_STAHJ   (Q4L818), 
RBKTP_AZOC5 (A8IA58), RBKTP_CUPNH (Q0K3R9), RBKTP_CUPPJ (Q46UT0), 
RBKTP_CUPTR (B2AIF3), RBKTP_ROSDO (Q16A32), TYPH1_ACISJ (A1W631), 
TYPH1_CUPNH (Q0KA59), TYPH2_ACISJ (A1W9B0), TYPH2_CUPPJ (Q46S32), 
TYPH_AERHH  (A0KPE3), TYPH_AERS4  (A4SRU3), TYPH_AGRT5  (Q8UJ08), 
TYPH_ALISL  (B6ENG4), TYPH_BRADU  (Q89QK7), TYPH_BRASB  (A5EG87), 
TYPH_BRASO  (A4YRL1), TYPH_BURCA  (Q1BV59), TYPH_BURCC  (B1KC83), 
TYPH_BURCH  (A0KCQ9), TYPH_BURCJ  (B4EPB7), TYPH_BURM7  (A3MAQ6), 
TYPH_BURMA  (Q62EC5), TYPH_BURMS  (A1UY21), TYPH_BURP0  (A3P8N2), 
TYPH_BURP6  (A3NN77), TYPH_BURPS  (Q63IV6), TYPH_BURS3  (Q39PA6), 
TYPH_CHRVO  (Q7NRT0), TYPH_COLP3  (Q483R6), TYPH_CROS8  (A7MGA9), 
TYPH_ECO24  (A7ZVS5), TYPH_ECO27  (B7UR10), TYPH_ECO45  (B7MNI9), 
TYPH_ECO55  (B7LEM8), TYPH_ECO57  (Q8XB35), TYPH_ECO5E  (B5Z4R4), 
TYPH_ECO7I  (B7NW62), TYPH_ECO81  (B7MTC8), TYPH_ECO8A  (B7LXU4), 
TYPH_ECODH  (B1XFJ2), TYPH_ECOHS  (A8A8B1), TYPH_ECOL6  (Q8FA52), 
TYPH_ECOLC  (B1IS37), TYPH_ECOLI  (P07650), TYPH_ECOLU  (B7NH50), 
TYPH_ECOSE  (B6I6M9), TYPH_ECOSM  (B1LEI7), TYPH_ENT38  (A4W699), 
TYPH_ERWCT  (Q6D991), TYPH_ERWT9  (B2VH51), TYPH_ESCF3  (B7LNS2), 
TYPH_HAHCH  (Q2SLV0), TYPH_HUMAN  (P19971), TYPH_IDILO  (Q5QXT8), 
TYPH_KLEP3  (B5Y276), TYPH_KLEP7  (A6THZ7), TYPH_LEGPA  (Q5X2M8), 
TYPH_LEGPC  (A5IFN1), TYPH_LEGPH  (Q5ZWR3), TYPH_LEGPN  (Q8RNP4), 
TYPH_MARMM  (Q0ATA0), TYPH_MESSB  (Q11BH8), TYPH_METCA  (Q607P2), 
TYPH_MYCGE  (P47297), TYPH_MYCPI  (P47717), TYPH_MYCPN  (P75052), 
TYPH_MYCTU  (O53366), TYPH_NITHX  (Q1QM39), TYPH_PARL1  (A7HYS8), 
TYPH_PHOPR  (Q6LUH3), TYPH_POLSJ  (Q12E97), TYPH_PROMH  (B4EWA3), 
TYPH_PSEU5  (A4VHV6), TYPH_PSYIN  (A1SYK5), TYPH_RALSO  (Q8Y2X7), 
TYPH_RHILO  (Q98GV5), TYPH_RHIME  (Q92T50), TYPH_RHISN  (C3MBH0), 
TYPH_RHOFD  (Q21W90), TYPH_RHOP5  (Q07J10), TYPH_RHOPA  (Q6N2A3), 
TYPH_RHOPB  (Q20Z21), TYPH_RHOPS  (Q13B59), TYPH_RHOPT  (B3QKL9), 
TYPH_SALA4  (B5F525), TYPH_SALAR  (A9MRA6), TYPH_SALCH  (Q57G40), 
TYPH_SALDC  (B5FTC6), TYPH_SALEP  (B5R2J7), TYPH_SALG2  (B5R9V0), 
TYPH_SALHS  (B4TH00), TYPH_SALNS  (B4T4H1), TYPH_SALPA  (Q5PK22), 
TYPH_SALPK  (B5BAJ8), TYPH_SALSV  (B4TU42), TYPH_SALTI  (Q8XF46), 
TYPH_SALTY  (Q7CP66), TYPH_SERP5  (A8G9H7), TYPH_SHEAM  (A1S475), 
TYPH_SHEB2  (B8E6P5), TYPH_SHEB5  (A3D7J3), TYPH_SHEB8  (A6WRB7), 
TYPH_SHEB9  (A9KZ79), TYPH_SHEDO  (Q12QG2), TYPH_SHEFN  (Q086F9), 
TYPH_SHEHH  (B0TQ90), TYPH_SHELP  (A3QGT2), TYPH_SHEON  (Q8EHK3), 
TYPH_SHEPA  (A8H727), TYPH_SHEPC  (A4Y9A7), TYPH_SHEPW  (B8CKI5), 
TYPH_SHESA  (A0KU08), TYPH_SHESH  (A8FYQ8), TYPH_SHESM  (Q0HLE9), 
TYPH_SHESR  (Q0HXQ3), TYPH_SHESW  (A1RH88), TYPH_SHEWM  (B1KRP7), 
TYPH_SHIB3  (B2TZR5), TYPH_SHIBS  (Q31SV7), TYPH_SHIDS  (Q327L4), 
TYPH_SHIF8  (Q0SX29), TYPH_SHIFL  (Q83P01), TYPH_SHISS  (Q3YU11), 
TYPH_SINMW  (A6UET3), TYPH_SODGM  (Q2NW05), TYPH_SPHAL  (Q1GQ92), 
TYPH_TOLAT  (C4LAA1), TYPH_VIBCH  (Q9KPL8), TYPH_VIBF1  (Q5E7J6), 
TYPH_VIBFM  (B5FA99), TYPH_VIBPA  (Q87M23), TYPH_VIBVU  (Q8DBT1), 
TYPH_VIBVY  (Q7MI39), TYPH_YERE8  (A1JJ98), TYPH_YERP3  (A7FMH4), 
TYPH_YERPE  (Q74PY8), TYPH_YERPS  (Q66EV9), TYPH_YERPY  (B1JL36)
» More

UniProtKB/Swiss-Prot
False negative sequences
1 sequence

AMPPA_UNCMA (Q0W5A8)

		
UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

TYPH_LACRH  (P19663), TYPH_MYCHO  (P43050)

		
PDB
[Detailed view]
15 PDB

1AZY; 1BRW; 1OTP; 1TPT; 1UOU; 2J0F; 2TPT; 2WK5; 2WK6; 3H5Q; 4EAD; 4EAF; 4GA4; 4GA5; 4GA6
» More

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