Entry: PS00662

General information about the entry

Entry name [info] T2SP_E
Accession [info] PS00662
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); OCT-1993 (DATA UPDATE); JUN-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00567

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein E signature.
Pattern [info]
[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_08 which contains 320'201 sequence entries.


Total number of hits 26 in 26 different sequences
Number of true positive hits 26 in 26 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.66 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
26 sequences

COMGA_BACHD (Q9K919), COMGA_BACSU (P25953), GSPE1_DICCH (P31702), 
GSPE2_DICD3 (Q01566), GSPE_AERHY  (P31741), GSPE_ECOLI  (P45759), 
GSPE_KLEPN  (P15645), GSPE_PECCC  (P31703), GSPE_PSEAE  (Q00512), 
GSPE_VIBCH  (P37093), GSPE_XANCP  (P31742), HOFB_ECOLI  (P36645), 
HOFB_HAEIN  (P44622), HXCR_PSEAE  (Q9I5N9), PILB_PSEAE  (P22608), 
PILF_NEIGO  (P37094), PILT_NEIGO  (Q06581), PILT_PSEAE  (P24559), 
TAPB_AERHY  (P45792), TCPT_VIBCH  (P29480), TRBB_RHIRD  (P54907), 
TRBB_RHISN  (P55395), VIRBB_AGRFC (P07169), VIRBB_AGRT9 (P0A3F9), 
VIRBB_RHIRD (P0A3F8), YGGR_ECOLI  (P52052)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

CAS3_ECOLI  (P38036), VIRBB_BARHE (Q9RNC7), VIRBB_BARQU (Q6FYW0)

		
PDB
[Detailed view]
4 PDB

3JVU; 3JVV; 4KSR; 4KSS

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