Entry: PS00662

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General information about the entry

Entry name [info] T2SP_E
Accession [info] PS00662
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); OCT-1993 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00567

Name and characterization of the entry

Description [info] Bacterial type II secretion system protein E signature.
Pattern [info]
[LIVM]-R-x(2)-P-D-x-[LIVM](3)-G-E-[LIVM]-R-D.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 25 in 25 different sequences
Number of true positive hits 25 in 25 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 89.29 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
25 sequences

COMGA_BACHD (Q9K919), COMGA_BACSU (P25953), GSPE1_DICCH (P31702), 
GSPE2_DICD3 (Q01566), GSPE_AERHY  (P31741), GSPE_ECOLI  (P45759), 
GSPE_KLEPN  (P15645), GSPE_PECCC  (P31703), GSPE_PSEAE  (Q00512), 
GSPE_VIBCH  (P37093), GSPE_XANCP  (P31742), HOFB_ECOLI  (P36645), 
HOFB_HAEIN  (P44622), PILB_PSEAE  (P22608), PILF_NEIGO  (P37094), 
PILT_NEIGO  (Q06581), PILT_PSEAE  (P24559), TAPB_AERHY  (P45792), 
TCPT_VIBCH  (P29480), TRBB_RHIRD  (P54907), TRBB_RHISN  (P55395), 
VIRBB_AGRT5 (P07169), VIRBB_AGRT9 (P0A3F9), VIRBB_RHIRD (P0A3F8), 
YGGR_ECOLI  (P52052)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

CAS3_ECOLI  (P38036), VIRBB_BARHE (Q9RNC7), VIRBB_BARQU (Q6FYW0)

		
PDB
[Detailed view]
4 PDB

3JVU; 3JVV; 4KSR; 4KSS

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