Entry: PS00663

General information about the entry
Entry name VINCULIN_1
Accession number PS00663
Entry type PATTERN
Date JUN-1992 (CREATED); JUN-1994 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00568
Name and characterization of the entry
DescriptionVinculin family talin-binding region signature.
Pattern [KR]-x-[LIVMF]-x(3)-[LIVMA]-x(2)-[LIVM]-x(6)-R-Q-Q-E-L.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 17 hits in 17 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 17 hits in 17 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 73.91 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CTNA1_BOVIN (Q3MHM6), CTNA1_HUMAN (P35221), CTNA1_MOUSE (P26231), 
CTNA1_RABIT (Q59I72), CTNA2_CHICK (P30997), CTNA2_HUMAN (P26232), 
CTNA2_MOUSE (Q61301), CTNA2_PONAB (Q5R416), CTNA2_XENLA (Q6GLP0), 
CTNA2_XENTR (A4IGI7), CTNA_DROME  (P35220), VINC_CAEEL  (P19826), 
VINC_CHICK  (P12003), VINC_HUMAN  (P18206), VINC_MOUSE  (Q64727), 
VINC_PIG    (P26234), VINC_RAT    (P85972)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CTNA2_DANRE (B7ZC77), CTNA3_HUMAN (Q9UI47), CTNA3_MOUSE (Q65CL1), 
VINC_BRUMA  (Q17162), VINC_DICDI  (Q54MH2), VINC_DROME  (O46037)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
VINC_XENLA  (Q04615)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1DOV; 1DOW; 1RKC; 1RKE; 1ST6; 1SYQ; 1T01; 1U6H; 1XWJ; 1YDI; 1ZVZ; 1ZW2; 1ZW3; 2GDC; 2GWW; 2HSQ; 2IBF; 3RF3; 3S90; 3TJ5; 3TJ6; 3ZDL; 4DJ9; 4E17; 4E18; 4EHP; 4IGG;

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