Entry: PS00664

General information about the entry
Entry name VINCULIN_2
Accession number PS00664
Entry type PATTERN
Date JUN-1992 (CREATED); JUN-1992 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00568
Name and characterization of the entry
DescriptionVinculin repeated domain signature.
Pattern [LIVM]-x-[QA]-A-x(2)-W-[IL]-x-[DN]-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 21 hits in 10 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 18 hits in 7 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 3 hits in 3 different sequences
  • Number of known missed hits: 2
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 85.71 %
  • Recall (true hits / (true hits + false negatives)): 90.00 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 3
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
VINC_CAEEL  (P19826), VINC_CHICK  (P12003), VINC_DROME  (O46037), 
VINC_HUMAN  (P18206), VINC_MOUSE  (Q64727), VINC_PIG    (P26234), 
VINC_RAT    (P85972)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
VINC_BRUMA  (Q17162), VINC_DICDI  (Q54MH2)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
VINC_XENLA  (Q04615)
False positive hits (sequences which do not belong to the set under consideration):
SEC31_CANAL (Q5AAU3), SEC31_LODEL (A5DTX3), SPPA_SYNY3  (P73689)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1ST6; 1TR2;

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