Entry: PS00671

Forthcoming changes to the profile format
General information about the entry

Entry name [info] D_2_HYDROXYACID_DH_3
Accession [info] PS00671
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00063

Name and characterization of the entry

Description [info] D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
Pattern [info]
[LMFATCYV]-[KPQNHAR]-x-[GSTDNK]-x-[LIVMFYWRC]-[LIVMFYW](2)-N-x-[STAGC]-R-
[GP]-x-[LIVH]-[LIVMCT]-[DNVE].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 322 in 322 different sequences
Number of true positive hits 321 in 321 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 66
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 99.69 %
Recall (true positives / (true positives + false negatives)) 82.95 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
321 sequences

CTBP1_HUMAN (Q13363), CTBP1_MOUSE (O88712), CTBP1_RAT   (Q9Z2F5), 
CTBP1_XENLA (Q9YHU0), CTBP2_BOVIN (Q0VCQ1), CTBP2_HUMAN (P56545), 
CTBP2_MOUSE (P56546), CTBP2_RAT   (Q9EQH5), CTBP2_XENLA (Q9W758), 
CTBP_DROME  (O46036), DDH_HAEIN   (P44501), DDH_ZYMMO   (P30799), 
DHD2_LACPA  (P17584), DHGY_CUCSA  (P13443), DHGY_HYPME  (P36234), 
DHGY_METEA  (Q59516), FDH1_ORYSJ  (Q9SXP2), FDH1_YEAS7  (A6ZN46), 
FDH1_YEAS8  (C8ZHD6), FDH1_YEASC  (N1P3Y5), FDH1_YEAST  (Q08911), 
FDH2_YEASC  (P0CT22), FDH2_YEAST  (P0CF35), FDH_ARATH   (Q9S7E4), 
FDH_CANBO   (O13437), FDH_EMENI   (Q03134), FDH_HORVU   (Q9ZRI8), 
FDH_NEUCR   (Q07103), FDH_PICAN   (P33677), FDH_PSESR   (P33160), 
FDH_SOLTU   (Q07511), FLDH_CLOSG  (G9EZR6), GHRA_CITK8  (A8AI49), 
GHRA_CROS8  (A7MFZ8), GHRA_ECO27  (B7UP47), GHRA_ECO45  (B7MIH3), 
GHRA_ECO55  (B7LFE3), GHRA_ECO57  (Q8X9K1), GHRA_ECO5E  (B5YVQ3), 
GHRA_ECO7I  (B7NLA1), GHRA_ECO81  (B7MTG4), GHRA_ECO8A  (B7M907), 
GHRA_ECOBW  (C4ZRX4), GHRA_ECODH  (B1X9E7), GHRA_ECOHS  (A7ZYY6), 
GHRA_ECOK1  (A1A9T1), GHRA_ECOL5  (Q0TJ41), GHRA_ECOL6  (Q8FIT1), 
GHRA_ECOLC  (B1IV68), GHRA_ECOLI  (P75913), GHRA_ECOLU  (B7N3I0), 
GHRA_ECOSE  (B6I9A9), GHRA_ECOSM  (B1LIY1), GHRA_ECOUT  (Q1RDC8), 
GHRA_ESCF3  (B7LTA2), GHRA_PHOLL  (Q7N571), GHRA_SALAR  (A9MH27), 
GHRA_SERP5  (A8GD46), GHRA_SHIB3  (B2TTN6), GHRA_SHIBS  (Q31Z89), 
GHRA_SHIDS  (Q32HN5), GHRA_SHISS  (Q3Z393), GHRB_CITK8  (A8ARD9), 
GHRB_CROS8  (A7MKR1), GHRB_ECO24  (A7ZTA0), GHRB_ECO27  (B7ULB4), 
GHRB_ECO45  (B7MER0), GHRB_ECO55  (B7L6W9), GHRB_ECO57  (P58220), 
GHRB_ECO5E  (B5YVK6), GHRB_ECO7I  (B7NP49), GHRB_ECO81  (B7N1K7), 
GHRB_ECO8A  (B7M3H6), GHRB_ECOBW  (C4ZXE2), GHRB_ECODH  (B1X8G8), 
GHRB_ECOHS  (A8A609), GHRB_ECOK1  (A1AH96), GHRB_ECOL5  (Q0TBP9), 
GHRB_ECOL6  (Q8FCF1), GHRB_ECOLC  (B1IZP1), GHRB_ECOLI  (P37666), 
GHRB_ECOLU  (B7NEK6), GHRB_ECOSE  (B6I3C3), GHRB_ECOSM  (B1LJB3), 
GHRB_ECOUT  (Q1R543), GHRB_ENT38  (A4W577), GHRB_ENTAG  (P58000), 
GHRB_ERWT9  (B2VCD1), GHRB_ESCF3  (B7LTG7), GHRB_KLEP3  (B5XMZ4), 
GHRB_KLEP7  (A6TFG7), GHRB_PECAS  (Q6DB24), GHRB_PECCP  (C6DJ88), 
GHRB_SALA4  (B5EX58), GHRB_SALCH  (Q57IH8), GHRB_SALDC  (B5FLC2), 
GHRB_SALEP  (B5R4N3), GHRB_SALHS  (B4T938), GHRB_SALNS  (B4SWJ5), 
GHRB_SALPA  (Q5PLL9), GHRB_SALPB  (A9MUT4), GHRB_SALPC  (C0Q1A7), 
GHRB_SALPK  (B5BHT3), GHRB_SALSV  (B4TZ41), GHRB_SALTI  (Q8Z2A8), 
GHRB_SALTY  (Q8ZLA1), GHRB_SERP5  (A8G7S7), GHRB_SHIB3  (B2U573), 
GHRB_SHIBS  (Q31V71), GHRB_SHIDS  (Q328L4), GHRB_SHIF8  (Q0SZE5), 
GHRB_SHIFL  (Q83PR3), GHRB_SHISS  (Q3YVT5), GHRB_YERE8  (A1JT62), 
GHRB_YERP3  (A7FPA2), GHRB_YERPA  (Q1C3K4), GHRB_YERPB  (B2K7F1), 
GHRB_YERPE  (Q0W9V5), GHRB_YERPG  (A9R4G6), GHRB_YERPN  (Q1CD80), 
GHRB_YERPP  (A4TGN1), GHRB_YERPS  (Q663W4), GOR1_YEAST  (P53839), 
GRHPR_HUMAN (Q9UBQ7), GRHPR_MOUSE (Q91Z53), GYAR_AERPE  (Q9YAW4), 
GYAR_KORCO  (B1L765), GYAR_PYRAB  (Q9UYR1), GYAR_PYRFU  (Q8U3Y2), 
GYAR_PYRHO  (O58320), GYAR_THEGJ  (C5A1V0), GYAR_THEKO  (Q5JEZ2), 
GYAR_THELI  (Q9C4M5), GYAR_THEON  (B6YWH0), GYAR_THEPD  (A1RYE4), 
LDHD_DICDI  (Q54UF7), LDHD_ECOLI  (P52643), LDHD_LACDA  (P26297), 
LDHD_LACHE  (P30901), LDHD_LACPE  (P26298), LDHD_LACPL  (Q88VJ2), 
LDHD_LEUMC  (P51011), LDHD_PEDAC  (Q59642), LDHD_STAAC  (Q5HD29), 
LDHD_STAAM  (P63940), LDHD_STAAN  (P99116), LDHD_STAAR  (Q6GDS2), 
LDHD_STAAS  (Q6G6F1), LDHD_STAAU  (P72357), LDHD_STAAW  (Q8NUT2), 
LDHD_STAEQ  (Q5HLA0), LDHD_STAES  (Q8CN22), LDHD_STRA3  (Q8E6A9), 
LDHD_STRA5  (Q8E0N5), LDHD_STRP1  (Q99ZM2), LDHD_TREPA  (O83080), 
PDXB_ACIAD  (Q6F943), PDXB_ALISL  (B6EIW3), PDXB_AZOVD  (C1DM66), 
PDXB_BACFN  (Q5LIR8), PDXB_BACFR  (Q64ZV5), PDXB_BACTN  (Q8A2E4), 
PDXB_BLOFL  (Q7VRU9), PDXB_BLOPB  (Q492H2), PDXB_CELJU  (B3PK14), 
PDXB_CITK8  (A8ADQ9), PDXB_COXBN  (A9KEY5), PDXB_COXBR  (A9NAQ7), 
PDXB_COXBU  (Q83AR8), PDXB_CROS8  (A7MH63), PDXB_ECO24  (A7ZPD6), 
PDXB_ECO27  (B7UFX8), PDXB_ECO45  (B7MG84), PDXB_ECO55  (B7LBH4), 
PDXB_ECO57  (Q8XCR0), PDXB_ECO5E  (B5YXW1), PDXB_ECO7I  (B7NP01), 
PDXB_ECO81  (B7MXZ7), PDXB_ECO8A  (B7M6K1), PDXB_ECOBW  (C4ZVL3), 
PDXB_ECODH  (B1X931), PDXB_ECOHS  (A8A2I9), PDXB_ECOK1  (A1ADG9), 
PDXB_ECOL5  (Q0TFC6), PDXB_ECOL6  (Q8FFH2), PDXB_ECOLC  (B1IXM2), 
PDXB_ECOLI  (P05459), PDXB_ECOLU  (B7N5T2), PDXB_ECOSE  (B6I4U8), 
PDXB_ECOSM  (B1LLS6), PDXB_ECOUT  (Q1R992), PDXB_EDWI9  (C5B8N0), 
PDXB_ENT38  (A4WCV4), PDXB_ESCF3  (B7LLF0), PDXB_HAHCH  (Q2SJQ9), 
PDXB_KLEP3  (B5XNR7), PDXB_LEGPA  (Q5X6I6), PDXB_LEGPH  (Q5ZX15), 
PDXB_LEGPL  (Q5WXZ0), PDXB_PECAS  (Q6D2N5), PDXB_PECCP  (C6DA76), 
PDXB_PHOLL  (Q7N2B2), PDXB_PHOPR  (Q6LNU2), PDXB_PROMH  (B4EZF9), 
PDXB_PSE14  (Q48KQ3), PDXB_PSEA6  (Q15QG8), PDXB_PSEA7  (A6V8H9), 
PDXB_PSEA8  (B7UVK4), PDXB_PSEAB  (Q02JM2), PDXB_PSEAE  (Q9I3W9), 
PDXB_PSEE4  (Q1I7B3), PDXB_PSEF5  (Q4KFD1), PDXB_PSEFS  (C3K5G7), 
PDXB_PSEMY  (A4XTK4), PDXB_PSEP1  (A5W6I8), PDXB_PSEPF  (Q3K9D1), 
PDXB_PSEPG  (B0KGD9), PDXB_PSEPK  (Q88L20), PDXB_PSEPW  (B1J5D7), 
PDXB_PSESM  (Q884R9), PDXB_PSEU2  (Q4ZVE7), PDXB_PSEU5  (A4VKJ1), 
PDXB_SALA4  (B5EZQ4), PDXB_SALAR  (A9MJ55), PDXB_SALCH  (Q57LY4), 
PDXB_SALDC  (B5FPL4), PDXB_SALEP  (B5R3Q1), PDXB_SALG2  (B5RCJ5), 
PDXB_SALHS  (B4TBN9), PDXB_SALNS  (B4SZP2), PDXB_SALPA  (Q5PCV8), 
PDXB_SALPB  (A9N474), PDXB_SALPC  (C0PZZ3), PDXB_SALPK  (B5BCH6), 
PDXB_SALSV  (B4TQA6), PDXB_SALTI  (P60801), PDXB_SALTY  (P60802), 
PDXB_SERP5  (A8GH44), PDXB_SHEAM  (A1S7K2), PDXB_SHEB2  (B8EEB4), 
PDXB_SHEB5  (A3D669), PDXB_SHEB8  (A6WQ07), PDXB_SHEB9  (A9KTV0), 
PDXB_SHEFN  (Q084S1), PDXB_SHEHH  (B0TKZ7), PDXB_SHELP  (A3QFC7), 
PDXB_SHEON  (Q8ECR2), PDXB_SHEPC  (A4Y882), PDXB_SHESA  (A0KV91), 
PDXB_SHESH  (A8FTT7), PDXB_SHESM  (Q0HKB6), PDXB_SHESP  (Q56731), 
PDXB_SHESR  (Q0HWL8), PDXB_SHESW  (A1RIA7), PDXB_SHEVD  (Q56733), 
PDXB_SHEWM  (B1KKP1), PDXB_SHIB3  (B2TWA2), PDXB_SHIBS  (Q31YD8), 
PDXB_SHIDS  (Q32DL6), PDXB_SHIF8  (Q0T2G5), PDXB_SHIFL  (Q83QR1), 
PDXB_SHISS  (Q3YZP1), PDXB_SODGM  (Q2NSH9), PDXB_TERTT  (C5BR49), 
PDXB_VIBCH  (Q9KQ92), PDXB_VIBF1  (Q5E452), PDXB_VIBFM  (B5FFP0), 
PDXB_VIBPA  (Q87MN8), PDXB_VIBSL  (B7VL81), PDXB_VIBVU  (Q8DB36), 
PDXB_VIBVY  (Q7MIT6), PDXB_WIGBR  (Q8D2P6), PDXB_YERE8  (A1JL55), 
PDXB_YERP3  (A7FGL9), PDXB_YERPA  (Q1C676), PDXB_YERPB  (B2K8H7), 
PDXB_YERPE  (Q8D0U3), PDXB_YERPG  (A9R7V0), PDXB_YERPN  (Q1CHL8), 
PDXB_YERPP  (A4TM66), PDXB_YERPS  (Q668W7), PDXB_YERPY  (B1JGI0), 
PTXD_PSEST  (O69054), SER33_YEAST (P40510), SERA_ARATH  (O04130), 
SERA_ARCFU  (O29445), SERA_BACSU  (P35136), SERA_BOVIN  (Q5EAD2), 
SERA_ECO57  (P0A9T2), SERA_ECOL6  (P0A9T1), SERA_ECOLI  (P0A9T0), 
SERA_HAEIN  (P43885), SERA_HUMAN  (O43175), SERA_MACFA  (Q60HD7), 
SERA_METJA  (Q58424), SERA_METTH  (O27051), SERA_MOUSE  (Q61753), 
SERA_MYCBO  (P0A545), SERA_MYCLE  (O33116), SERA_MYCTO  (P9WNX2), 
SERA_MYCTU  (P9WNX3), SERA_PANTR  (A5A6P1), SERA_PIG    (A5GFY8), 
SERA_PONAB  (Q5R7M2), SERA_RAT    (O08651), SERA_SCHPO  (P87228), 
SERA_SHIFL  (P0A9T3), SERA_SYNY3  (P73821), SERA_YEAST  (P40054), 
SLCC_CHRSD  (Q1QWN6), VANH_ENTFA  (Q47748), VANH_ENTFC  (Q05709), 
Y1556_HAEIN (P45250), Y1879_STAES (Q8CNB8), Y1888_STAEQ (Q5HLU4), 
Y2355_CORGL (P0C1E8), Y752_STAHJ  (Q4L8G4), YEAA_SCHPO  (O14075), 
YGDH_SCHPO  (O94574), YGT5_YEAST  (P53100), YPRB2_CORML (P0C1E9)
» More

UniProtKB/Swiss-Prot
False negative sequences
66 sequences

CTBP1_CAEEL (Q20595), CTBP_ARATH  (O23702), DDH_HALMT   (Q2VEQ7), 
GHRA_ENT38  (A4W948), GHRA_KLEP3  (B5XXL3), GHRA_KLEP7  (A6T7B8), 
GHRA_SALA4  (B5F974), GHRA_SALCH  (Q57QM2), GHRA_SALDC  (B5FL30), 
GHRA_SALEP  (B5QY30), GHRA_SALG2  (B5RBG3), GHRA_SALHS  (B4TEQ6), 
GHRA_SALNS  (B4T2W6), GHRA_SALPA  (Q5PGZ3), GHRA_SALPB  (A9N5T3), 
GHRA_SALPC  (C0Q872), GHRA_SALPK  (B5BBF3), GHRA_SALSV  (B4TSP5), 
GHRA_SALTI  (Q8Z7M6), GHRA_SALTY  (Q8ZQ30), GHRA_YERE8  (A1JRR3), 
GHRB_SALG2  (B5RGN1), GHRB_YERPY  (B1JH01), PDXB_ACIB3  (B7GY62), 
PDXB_ACIB5  (B7I5Z2), PDXB_ACIBC  (B2HX89), PDXB_ACIBS  (B0VT23), 
PDXB_ACIBT  (A3M810), PDXB_ACIBY  (B0VDM7), PDXB_AERHH  (A0KLP0), 
PDXB_AERS4  (A4SNU1), PDXB_ALCBS  (Q0VQC3), PDXB_BAUCH  (Q1LTA7), 
PDXB_CHRSD  (Q1QXV7), PDXB_COLP3  (Q47XK1), PDXB_IDILO  (Q5QUE2), 
PDXB_MARAV  (A1U1I8), PDXB_MARMS  (A6VXM3), PDXB_PORGI  (Q7MV70), 
PDXB_PSEHT  (Q3IF36), PDXB_PSYA2  (Q4FV16), PDXB_PSYCK  (Q1QE21), 
PDXB_PSYIN  (A1SW94), PDXB_PSYWF  (A5WHK7), PDXB_RUTMC  (A1AWW7), 
PDXB_SACD2  (Q21LK8), PDXB_SALRD  (Q2S0U3), PDXB_SHEDO  (Q12P58), 
PDXB_THICR  (Q31IH6), PDXB_TOLAT  (C4LF16), PDXB_VESOH  (A5CWD1), 
SERA_DICDI  (Q54UH8), TKRA_BACSU  (O32264), TKRA_DICDI  (Q54DP1), 
Y2098_STAAN (Q7A417), Y2178_STAAB (Q2YYT9), Y2196_STAAS (Q6G716), 
Y2224_STAAW (Q8NV80), Y2254_STAA3 (Q2FEI9), Y2296_STAAC (Q5HDQ4), 
Y2305_STAAM (Q99RW8), Y2389_STAAR (Q6GEC9), Y2577_STAA8 (Q2FVW4), 
Y606_STAS1  (Q49ZM5), YOAD_BACSU  (O34815), YP113_YEAST (Q02961)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

YMP5_STRCH  (P43169)

		
UniProtKB/Swiss-Prot
False positive sequences
1 sequence

VF030_IIV3  (Q196V4)

		
PDB
[Detailed view]
40 PDB

1DXY; 1GDH; 1HKU; 1HL3; 1J49; 1J4A; 1MX3; 1PSD; 1YGY; 2DBR; 2DBZ; 2DLD; 2FSS; 2G76; 2GCG; 2GO1; 2GUG; 2HU2; 2J6I; 2NAC; 2NAD; 2O4C; 2OME; 2P9C; 2P9E; 2P9G; 2PA3; 2WWR; 3DC2; 3DDN; 3GA0; 3JTM; 3N7U; 3NAQ; 3OET; 4E5K; 4E5M; 4E5N; 4E5P; 4EBF
» More

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