Entry: PS00676

General information about the entry

Entry name [info] SIGMA54_INTERACT_2
Accession [info] PS00676
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); MAY-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain ATP-binding region B signature.
Pattern [info]
[GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]-
[EK]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_06 which contains 551'385 sequence entries.


Total number of hits 136 in 136 different sequences
Number of true positive hits 131 in 131 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 17
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 96.32 %
Recall (true positives / (true positives + false negatives)) 88.51 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
131 sequences

ACOR_CUPNH  (P28614    ), ALGB_PSEAE  (P23747    ), ALGB_PSEPK  (Q88RJ6    ), 
ALGB_PSESM  (Q88AQ2    ), ANFA_AZOVI  (P12626    ), ATOC_ECOLI  (Q06065    ), 
DCTD_PSEAE  (Q9HU19    ), DCTD_RHILE  (P10046    ), DCTD_RHIME  (P13632    ), 
DHAR_CITFR  (P45512    ), DHAR_ECOLI  (P76016    ), FLBD_CAUCR  (P17899    ), 
GLRR_ECOLI  (P0AFU4    ), HOXA_BRADU  (P31908    ), HOXA_CUPNH  (P29267    ), 
HRPR_PSESY  (P37930    ), HRPS_PSESH  (P26316    ), HRPS_PSESY  (P37931    ), 
HYFR_ECOLI  (P71229    ), LEVR_BACSU  (P23914    ), LIHY_GEOSE  (O85057    ), 
LUXO_VIBC3  (O87455    ), LUXO_VIBCB  (A7MVC2    ), LUXO_VIBCH  (Q9KT84    ), 
LUXO_VIBHA  (P0C5S5    ), LUXO_VIBPA  (Q87MX7    ), LUXO_VIBVU  (Q8CWJ5    ), 
LUXO_VIBVY  (Q7MM78    ), NIFA_AZOBR  (P30667    ), NIFA_AZOC5  (P09133    ), 
NIFA_AZOLI  (P54929    ), NIFA_AZOVI  (P09570    ), NIFA_BRADU  (P05407    ), 
NIFA_ENTAG  (P54930    ), NIFA_HERSE  (P27713    ), NIFA_KLEOX  (P56266    ), 
NIFA_KLEPN  (P03027    ), NIFA_RHIEC  (P54931    ), NIFA_RHILE  (P09828    ), 
NIFA_RHILT  (P24426    ), NIFA_RHIME  (P03028    ), NIFA_RHISN  (Q53206    ), 
NIFA_RHOCA  (P0CY94    ), NIFA_RHOCB  (D5ARW9    ), NORR1_CUPNH (Q9K4V0    ), 
NORR2_CUPNH (Q9K4U8    ), NORR_AERS4  (A4STH5    ), NORR_CITK8  (A8ANR6    ), 
NORR_ECO24  (A7ZQD8    ), NORR_ECO27  (B7UHC1    ), NORR_ECO45  (B7MKH8    ), 
NORR_ECO55  (B7LEC0    ), NORR_ECO57  (Q8X854    ), NORR_ECO5E  (B5Z370    ), 
NORR_ECO7I  (B7NSI9    ), NORR_ECO81  (B7MZ04    ), NORR_ECO8A  (B7M9E6    ), 
NORR_ECOBW  (C4ZYV4    ), NORR_ECODH  (B1XCN6    ), NORR_ECOHS  (A8A3I6    ), 
NORR_ECOK1  (A1AEP9    ), NORR_ECOL5  (Q0TEH1    ), NORR_ECOL6  (Q8FEN6    ), 
NORR_ECOLC  (B1IUX0    ), NORR_ECOLI  (P37013    ), NORR_ECOLU  (B7N6T9    ), 
NORR_ECOSE  (B6I695    ), NORR_ECOSM  (B1LQ27    ), NORR_ECOUT  (Q1R7Z1    ), 
NORR_ENT38  (A4WDR5    ), NORR_ESCF3  (B7LW25    ), NORR_KLEP3  (B5XVA2    ), 
NORR_KLEP7  (A6TCX4    ), NORR_PECAS  (Q6D8R9    ), NORR_SALA4  (B5F363    ), 
NORR_SALAR  (A9MFX7    ), NORR_SALCH  (Q57KT4    ), NORR_SALDC  (B5FSZ0    ), 
NORR_SALEP  (B5QV88    ), NORR_SALG2  (B5RDG4    ), NORR_SALHS  (B4TF23    ), 
NORR_SALNS  (B4T3B0    ), NORR_SALPA  (Q5PF20    ), NORR_SALPB  (A9N0D7    ), 
NORR_SALPC  (C0PWN2    ), NORR_SALSV  (B4TT16    ), NORR_SALTI  (Q8Z4C6    ), 
NORR_SALTY  (Q8ZMJ8    ), NORR_SERP5  (A8GG93    ), NORR_SHIBS  (Q31X73    ), 
NORR_SHIDS  (Q32CL9    ), NORR_SHIF8  (Q0T1D4    ), NORR_SHIFL  (P59402    ), 
NORR_SHISS  (Q3YYF5    ), NORR_VIBF1  (Q5E3W8    ), NORR_VIBVU  (Q8D4F9    ), 
NORR_VIBVY  (Q7MFY9    ), NTRC_AZOBR  (P45671    ), NTRC_AZOC5  (Q04848    ), 
NTRC_BRASR  (P10576    ), NTRC_ECO57  (P0AFB9    ), NTRC_ECOLI  (P0AFB8    ), 
NTRC_KLEPN  (P03029    ), NTRC_PROHU  (P28787    ), NTRC_RHIME  (P10577    ), 
NTRC_SALTY  (P41789    ), NTRX_AZOC5  (Q04849    ), PILR_PSEAE  (Q00934    ), 
PRPR_ECOLI  (P77743    ), PRPR_SALTY  (P74839    ), PSPF_ECOLI  (P37344    ), 
QSEF_ECO57  (P0AFU5    ), ROCR_BACSU  (P38022    ), RTCR_ECOLI  (P38035    ), 
STC_CLOBE   (P26047    ), TYRR_CITBR  (O54426    ), TYRR_ECOLI  (P07604    ), 
TYRR_ENTAG  (Q9ZIB7    ), TYRR_SALTI  (P0A2D8    ), TYRR_SALTY  (P0A2D7    ), 
VNFA_AZOVI  (P12627    ), WTSA_PANSE  (P36219    ), XYLR_PSEPU  (P06519    ), 
YGEV_ECOLI  (Q46802    ), YHYA_PSESN  (Q01265    ), YQIR_BACSU  (P54529    ), 
ZRAR_ECO57  (Q8X613    ), ZRAR_ECOLI  (P14375    ), ZRAR_KLEOX  (Q9APD9    ), 
ZRAR_SALTI  (Q8Z333    ), ZRAR_SALTY  (P25852    )
» more

UniProtKB/Swiss-Prot
False negative sequences
17 sequences

ACOR_BACSU  (O31551    ), DGAR_SALT1  (D0ZLR9    ), FHLA_ECOLI  (P19323    ), 
FHLA_SALTS  (E1WAA4    ), FHLA_SALTY  (P0CL46    ), HUPR_RHOCA  (P26408    ), 
NORR_AERHH  (A0KEJ0    ), NTRC_RHOCB  (P09432    ), NTRXL_RICBR (Q1RJS1    ), 
NTRXL_RICCN (Q92HC2    ), NTRXL_RICFE (Q4UL27    ), NTRXL_RICPR (Q9ZCY9    ), 
NTRXL_RICTY (Q68WH4    ), PGTA_SALTY  (P06184    ), TYRR_HAEIN  (P44694    ), 
Y4PA_RHISN  (P55610    ), YPLP_BACSU  (P54156    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

NIFA_AZOCH  (P56269    ), NTRC_VIBAL  (P19905    ), YFHA_KLEOX  (P21710    )

		
UniProtKB/Swiss-Prot
False positive sequences
5 sequences

CLPX_BORBP  (Q660R1    ), CLPX_BORBU  (O51557    ), CLPX_CAMJE  (Q9PIM0    ), 
CLPX_HELHP  (Q7VGY5    ), YIFB_SALTY  (P57015    )
» more

PDB
[Detailed view]
8 PDB

1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2C9C; 2VII

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