Entry: PS00676

General information about the entry

Entry name [info] SIGMA54_INTERACT_2
Accession [info] PS00676
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); MAR-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain ATP-binding region B signature.
Pattern [info]
[GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]-
[EK]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_04 which contains 550'960 sequence entries.


Total number of hits 136 in 136 different sequences
Number of true positive hits 131 in 131 different sequences
Number of 'unknown' hits 0
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 17
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 96.32 %
Recall (true positives / (true positives + false negatives)) 88.51 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
131 sequences

ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), ALGB_PSEPK  (Q88RJ6), 
ALGB_PSESM  (Q88AQ2), ANFA_AZOVI  (P12626), ATOC_ECOLI  (Q06065), 
DCTD_PSEAE  (Q9HU19), DCTD_RHILE  (P10046), DCTD_RHIME  (P13632), 
DHAR_CITFR  (P45512), DHAR_ECOLI  (P76016), FLBD_CAUCR  (P17899), 
GLRR_ECOLI  (P0AFU4), HOXA_BRADU  (P31908), HOXA_CUPNH  (P29267), 
HRPR_PSESY  (P37930), HRPS_PSESH  (P26316), HRPS_PSESY  (P37931), 
HYFR_ECOLI  (P71229), LEVR_BACSU  (P23914), LIHY_GEOSE  (O85057), 
LUXO_VIBC3  (O87455), LUXO_VIBCB  (A7MVC2), LUXO_VIBCH  (Q9KT84), 
LUXO_VIBHA  (P0C5S5), LUXO_VIBPA  (Q87MX7), LUXO_VIBVU  (Q8CWJ5), 
LUXO_VIBVY  (Q7MM78), NIFA_AZOBR  (P30667), NIFA_AZOC5  (P09133), 
NIFA_AZOLI  (P54929), NIFA_AZOVI  (P09570), NIFA_BRADU  (P05407), 
NIFA_ENTAG  (P54930), NIFA_HERSE  (P27713), NIFA_KLEOX  (P56266), 
NIFA_KLEPN  (P03027), NIFA_RHIEC  (P54931), NIFA_RHILE  (P09828), 
NIFA_RHILT  (P24426), NIFA_RHIME  (P03028), NIFA_RHISN  (Q53206), 
NIFA_RHOCA  (P0CY94), NIFA_RHOCB  (D5ARW9), NORR1_CUPNH (Q9K4V0), 
NORR2_CUPNH (Q9K4U8), NORR_AERS4  (A4STH5), NORR_CITK8  (A8ANR6), 
NORR_ECO24  (A7ZQD8), NORR_ECO27  (B7UHC1), NORR_ECO45  (B7MKH8), 
NORR_ECO55  (B7LEC0), NORR_ECO57  (Q8X854), NORR_ECO5E  (B5Z370), 
NORR_ECO7I  (B7NSI9), NORR_ECO81  (B7MZ04), NORR_ECO8A  (B7M9E6), 
NORR_ECOBW  (C4ZYV4), NORR_ECODH  (B1XCN6), NORR_ECOHS  (A8A3I6), 
NORR_ECOK1  (A1AEP9), NORR_ECOL5  (Q0TEH1), NORR_ECOL6  (Q8FEN6), 
NORR_ECOLC  (B1IUX0), NORR_ECOLI  (P37013), NORR_ECOLU  (B7N6T9), 
NORR_ECOSE  (B6I695), NORR_ECOSM  (B1LQ27), NORR_ECOUT  (Q1R7Z1), 
NORR_ENT38  (A4WDR5), NORR_ESCF3  (B7LW25), NORR_KLEP3  (B5XVA2), 
NORR_KLEP7  (A6TCX4), NORR_PECAS  (Q6D8R9), NORR_SALA4  (B5F363), 
NORR_SALAR  (A9MFX7), NORR_SALCH  (Q57KT4), NORR_SALDC  (B5FSZ0), 
NORR_SALEP  (B5QV88), NORR_SALG2  (B5RDG4), NORR_SALHS  (B4TF23), 
NORR_SALNS  (B4T3B0), NORR_SALPA  (Q5PF20), NORR_SALPB  (A9N0D7), 
NORR_SALPC  (C0PWN2), NORR_SALSV  (B4TT16), NORR_SALTI  (Q8Z4C6), 
NORR_SALTY  (Q8ZMJ8), NORR_SERP5  (A8GG93), NORR_SHIBS  (Q31X73), 
NORR_SHIDS  (Q32CL9), NORR_SHIF8  (Q0T1D4), NORR_SHIFL  (P59402), 
NORR_SHISS  (Q3YYF5), NORR_VIBF1  (Q5E3W8), NORR_VIBVU  (Q8D4F9), 
NORR_VIBVY  (Q7MFY9), NTRC_AZOBR  (P45671), NTRC_AZOC5  (Q04848), 
NTRC_BRASR  (P10576), NTRC_ECO57  (P0AFB9), NTRC_ECOLI  (P0AFB8), 
NTRC_KLEPN  (P03029), NTRC_PROHU  (P28787), NTRC_RHIME  (P10577), 
NTRC_SALTY  (P41789), NTRX_AZOC5  (Q04849), PILR_PSEAE  (Q00934), 
PRPR_ECOLI  (P77743), PRPR_SALTY  (P74839), PSPF_ECOLI  (P37344), 
QSEF_ECO57  (P0AFU5), ROCR_BACSU  (P38022), RTCR_ECOLI  (P38035), 
STC_CLOBE   (P26047), TYRR_CITBR  (O54426), TYRR_ECOLI  (P07604), 
TYRR_ENTAG  (Q9ZIB7), TYRR_SALTI  (P0A2D8), TYRR_SALTY  (P0A2D7), 
VNFA_AZOVI  (P12627), WTSA_PANSE  (P36219), XYLR_PSEPU  (P06519), 
YGEV_ECOLI  (Q46802), YHYA_PSESN  (Q01265), YQIR_BACSU  (P54529), 
ZRAR_ECO57  (Q8X613), ZRAR_ECOLI  (P14375), ZRAR_KLEOX  (Q9APD9), 
ZRAR_SALTI  (Q8Z333), ZRAR_SALTY  (P25852)
» more

UniProtKB/Swiss-Prot
False negative sequences
17 sequences

ACOR_BACSU  (O31551), DGAR_SALT1  (D0ZLR9), FHLA_ECOLI  (P19323), 
FHLA_SALTS  (E1WAA4), FHLA_SALTY  (P0CL46), HUPR_RHOCA  (P26408), 
NORR_AERHH  (A0KEJ0), NTRC_RHOCB  (P09432), NTRXL_RICBR (Q1RJS1), 
NTRXL_RICCN (Q92HC2), NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), 
NTRXL_RICTY (Q68WH4), PGTA_SALTY  (P06184), TYRR_HAEIN  (P44694), 
Y4PA_RHISN  (P55610), YPLP_BACSU  (P54156)
» more

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710)

		
UniProtKB/Swiss-Prot
False positive sequences
5 sequences

CLPX_BORBP  (Q660R1), CLPX_BORBU  (O51557), CLPX_CAMJE  (Q9PIM0), 
CLPX_HELHP  (Q7VGY5), YIFB_SALTY  (P57015)
» more

PDB
[Detailed view]
8 PDB

1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2C9C; 2VII

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