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Entry: PS00676
General information about the entry
Entry nameSIGMA54_INTERACT_2
Accession numberPS00676
Entry typePATTERN
DateJUN-1992 (CREATED); APR-2006 (DATA UPDATE); DEC-2011 (INFO UPDATE).
PROSITE DocumentationPDOC00579
Name and characterization of the entry
DescriptionSigma-54 interaction domain ATP-binding region B signature.
Pattern[GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]- [EK]-[LIVM].
Numerical results
  • UniProtKB/Swiss-Prot release number: 01, total number of sequence entries in that release: 534242.
  • Total number of hits in UniProtKB/Swiss-Prot: 135 hits in 135 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 130 hits in 130 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 5 hits in 5 different sequences
  • Number of known missed hits: 16
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 3
  • Precision (true hits / (true hits + false positives)): 96.30 %
  • Recall (true hits / (true hits + false negatives)): 89.04 %
Comments
  • Taxonomic range: Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 2
Cross-references
UniProtKB/Swiss-ProtTrue positive hits:
ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), ALGB_PSEPK  (Q88RJ6), 
ALGB_PSESM  (Q88AQ2), ANFA_AZOVI  (P12626), ATOC_ECOLI  (Q06065), 
DCTD_RHILE  (P10046), DCTD_RHIME  (P13632), DHAR_CITFR  (P45512), 
DHAR_ECOLI  (P76016), FLBD_CAUCR  (P17899), GLRR_ECOLI  (P0AFU4), 
HOXA_BRAJA  (P31908), HOXA_CUPNH  (P29267), HRPR_PSESY  (P37930), 
HRPS_PSESH  (P26316), HRPS_PSESY  (P37931), HYFR_ECOLI  (P71229), 
LEVR_BACSU  (P23914), LIHY_GEOSE  (O85057), LUXO_VIBC3  (O87455), 
LUXO_VIBCH  (Q9KT84), LUXO_VIBHA  (P0C5S5), LUXO_VIBHB  (A7MVC2), 
LUXO_VIBPA  (Q87MX7), LUXO_VIBVU  (Q8CWJ5), LUXO_VIBVY  (Q7MM78), 
NIFA_AZOBR  (P30667), NIFA_AZOC5  (P09133), NIFA_AZOLI  (P54929), 
NIFA_AZOVI  (P09570), NIFA_BRAJA  (P05407), NIFA_ENTAG  (P54930), 
NIFA_HERSE  (P27713), NIFA_KLEOX  (P56266), NIFA_KLEPN  (P03027), 
NIFA_RHIEC  (P54931), NIFA_RHILE  (P09828), NIFA_RHILT  (P24426), 
NIFA_RHIME  (P03028), NIFA_RHISN  (Q53206), NIFA_RHOCA  (P0CY94), 
NIFA_RHOCB  (D5ARW9), NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), 
NORR_AERS4  (A4STH5), NORR_CITK8  (A8ANR6), NORR_ECO24  (A7ZQD8), 
NORR_ECO27  (B7UHC1), NORR_ECO45  (B7MKH8), NORR_ECO55  (B7LEC0), 
NORR_ECO57  (Q8X854), NORR_ECO5E  (B5Z370), NORR_ECO7I  (B7NSI9), 
NORR_ECO81  (B7MZ04), NORR_ECO8A  (B7M9E6), NORR_ECOBW  (C4ZYV4), 
NORR_ECODH  (B1XCN6), NORR_ECOHS  (A8A3I6), NORR_ECOK1  (A1AEP9), 
NORR_ECOL5  (Q0TEH1), NORR_ECOL6  (Q8FEN6), NORR_ECOLC  (B1IUX0), 
NORR_ECOLI  (P37013), NORR_ECOLU  (B7N6T9), NORR_ECOSE  (B6I695), 
NORR_ECOSM  (B1LQ27), NORR_ECOUT  (Q1R7Z1), NORR_ENT38  (A4WDR5), 
NORR_ERWCT  (Q6D8R9), NORR_ESCF3  (B7LW25), NORR_KLEP3  (B5XVA2), 
NORR_KLEP7  (A6TCX4), NORR_SALA4  (B5F363), NORR_SALAR  (A9MFX7), 
NORR_SALCH  (Q57KT4), NORR_SALDC  (B5FSZ0), NORR_SALEP  (B5QV88), 
NORR_SALG2  (B5RDG4), NORR_SALHS  (B4TF23), NORR_SALNS  (B4T3B0), 
NORR_SALPA  (Q5PF20), NORR_SALPB  (A9N0D7), NORR_SALPC  (C0PWN2), 
NORR_SALSV  (B4TT16), NORR_SALTI  (Q8Z4C6), NORR_SALTY  (Q8ZMJ8), 
NORR_SERP5  (A8GG93), NORR_SHIBS  (Q31X73), NORR_SHIDS  (Q32CL9), 
NORR_SHIF8  (Q0T1D4), NORR_SHIFL  (P59402), NORR_SHISS  (Q3YYF5), 
NORR_VIBF1  (Q5E3W8), NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), 
NTRC_AZOBR  (P45671), NTRC_AZOC5  (Q04848), NTRC_BRASR  (P10576), 
NTRC_ECO57  (P0AFB9), NTRC_ECOLI  (P0AFB8), NTRC_KLEPN  (P03029), 
NTRC_PROHU  (P28787), NTRC_RHIME  (P10577), NTRC_SALTY  (P41789), 
NTRX_AZOC5  (Q04849), PILR_PSEAE  (Q00934), PRPR_ECOLI  (P77743), 
PRPR_SALTY  (P74839), PSPF_ECOLI  (P37344), QSEF_ECO57  (P0AFU5), 
ROCR_BACSU  (P38022), RTCR_ECOLI  (P38035), STC_CLOBE   (P26047), 
TYRR_CITBR  (O54426), TYRR_ECOLI  (P07604), TYRR_ENTAG  (Q9ZIB7), 
TYRR_SALTI  (P0A2D8), TYRR_SALTY  (P0A2D7), VNFA_AZOVI  (P12627), 
WTSA_ERWST  (P36219), XYLR_PSEPU  (P06519), YGEV_ECOLI  (Q46802), 
YHYA_PSESN  (Q01265), YQIR_BACSU  (P54529), ZRAR_ECO57  (Q8X613), 
ZRAR_ECOLI  (P14375), ZRAR_KLEOX  (Q9APD9), ZRAR_SALTI  (Q8Z333), 
ZRAR_SALTY  (P25852)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ACOR_BACSU  (O31551), FHLA_ECOLI  (P19323), FHLA_SALTS  (E1WAA4), 
FHLA_SALTY  (P0CL46), HUPR_RHOCA  (P26408), NORR_AERHH  (A0KEJ0), 
NTRC_RHOCB  (P09432), NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), 
NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), 
PGTA_SALTY  (P06184), TYRR_HAEIN  (P44694), Y4PA_RHISN  (P55610), 
YPLP_BACSU  (P54156)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710)
False positive hits (sequences which do not belong to the set under consideration):
CLPX_BORBU  (O51557), CLPX_BORGA  (Q660R1), CLPX_CAMJE  (Q9PIM0), 
CLPX_HELHP  (Q7VGY5), YIFB_SALTY  (P57015)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2C9C; 2VII;

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