Entry: PS00676

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General information about the entry

Entry name [info] SIGMA54_INTERACT_2
Accession [info] PS00676
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00579

Name and characterization of the entry

Description [info] Sigma-54 interaction domain ATP-binding region B signature.
Pattern [info]
[GS]-x-[LIVMFA]-x(2)-[AS]-[DNEQASH]-[GNEKT]-G-[STIM]-[LIVMFY](3)-[DE]-
[EK]-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_09 which contains 546'439 sequence entries.


Total number of hits 135 in 135 different sequences
Number of true positive hits 130 in 130 different sequences
Number of 'unknown' hits
Number of false positive hits 5 in 5 different sequences
Number of false negative sequences 16
Number of 'partial' sequences 3
Precision (true positives / (true positives + false positives)) 96.30 %
Recall (true positives / (true positives + false negatives)) 89.04 %

Comments [info]

Taxonomic range [info] Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
130 sequences

ACOR_CUPNH  (P28614), ALGB_PSEAE  (P23747), ALGB_PSEPK  (Q88RJ6), 
ALGB_PSESM  (Q88AQ2), ANFA_AZOVI  (P12626), ATOC_ECOLI  (Q06065), 
DCTD_RHILE  (P10046), DCTD_RHIME  (P13632), DHAR_CITFR  (P45512), 
DHAR_ECOLI  (P76016), FLBD_CAUCR  (P17899), GLRR_ECOLI  (P0AFU4), 
HOXA_BRADU  (P31908), HOXA_CUPNH  (P29267), HRPR_PSESY  (P37930), 
HRPS_PSESH  (P26316), HRPS_PSESY  (P37931), HYFR_ECOLI  (P71229), 
LEVR_BACSU  (P23914), LIHY_GEOSE  (O85057), LUXO_VIBC3  (O87455), 
LUXO_VIBCB  (A7MVC2), LUXO_VIBCH  (Q9KT84), LUXO_VIBHA  (P0C5S5), 
LUXO_VIBPA  (Q87MX7), LUXO_VIBVU  (Q8CWJ5), LUXO_VIBVY  (Q7MM78), 
NIFA_AZOBR  (P30667), NIFA_AZOC5  (P09133), NIFA_AZOLI  (P54929), 
NIFA_AZOVI  (P09570), NIFA_BRADU  (P05407), NIFA_ENTAG  (P54930), 
NIFA_HERSE  (P27713), NIFA_KLEOX  (P56266), NIFA_KLEPN  (P03027), 
NIFA_RHIEC  (P54931), NIFA_RHILE  (P09828), NIFA_RHILT  (P24426), 
NIFA_RHIME  (P03028), NIFA_RHISN  (Q53206), NIFA_RHOCA  (P0CY94), 
NIFA_RHOCB  (D5ARW9), NORR1_CUPNH (Q9K4V0), NORR2_CUPNH (Q9K4U8), 
NORR_AERS4  (A4STH5), NORR_CITK8  (A8ANR6), NORR_ECO24  (A7ZQD8), 
NORR_ECO27  (B7UHC1), NORR_ECO45  (B7MKH8), NORR_ECO55  (B7LEC0), 
NORR_ECO57  (Q8X854), NORR_ECO5E  (B5Z370), NORR_ECO7I  (B7NSI9), 
NORR_ECO81  (B7MZ04), NORR_ECO8A  (B7M9E6), NORR_ECOBW  (C4ZYV4), 
NORR_ECODH  (B1XCN6), NORR_ECOHS  (A8A3I6), NORR_ECOK1  (A1AEP9), 
NORR_ECOL5  (Q0TEH1), NORR_ECOL6  (Q8FEN6), NORR_ECOLC  (B1IUX0), 
NORR_ECOLI  (P37013), NORR_ECOLU  (B7N6T9), NORR_ECOSE  (B6I695), 
NORR_ECOSM  (B1LQ27), NORR_ECOUT  (Q1R7Z1), NORR_ENT38  (A4WDR5), 
NORR_ESCF3  (B7LW25), NORR_KLEP3  (B5XVA2), NORR_KLEP7  (A6TCX4), 
NORR_PECAS  (Q6D8R9), NORR_SALA4  (B5F363), NORR_SALAR  (A9MFX7), 
NORR_SALCH  (Q57KT4), NORR_SALDC  (B5FSZ0), NORR_SALEP  (B5QV88), 
NORR_SALG2  (B5RDG4), NORR_SALHS  (B4TF23), NORR_SALNS  (B4T3B0), 
NORR_SALPA  (Q5PF20), NORR_SALPB  (A9N0D7), NORR_SALPC  (C0PWN2), 
NORR_SALSV  (B4TT16), NORR_SALTI  (Q8Z4C6), NORR_SALTY  (Q8ZMJ8), 
NORR_SERP5  (A8GG93), NORR_SHIBS  (Q31X73), NORR_SHIDS  (Q32CL9), 
NORR_SHIF8  (Q0T1D4), NORR_SHIFL  (P59402), NORR_SHISS  (Q3YYF5), 
NORR_VIBF1  (Q5E3W8), NORR_VIBVU  (Q8D4F9), NORR_VIBVY  (Q7MFY9), 
NTRC_AZOBR  (P45671), NTRC_AZOC5  (Q04848), NTRC_BRASR  (P10576), 
NTRC_ECO57  (P0AFB9), NTRC_ECOLI  (P0AFB8), NTRC_KLEPN  (P03029), 
NTRC_PROHU  (P28787), NTRC_RHIME  (P10577), NTRC_SALTY  (P41789), 
NTRX_AZOC5  (Q04849), PILR_PSEAE  (Q00934), PRPR_ECOLI  (P77743), 
PRPR_SALTY  (P74839), PSPF_ECOLI  (P37344), QSEF_ECO57  (P0AFU5), 
ROCR_BACSU  (P38022), RTCR_ECOLI  (P38035), STC_CLOBE   (P26047), 
TYRR_CITBR  (O54426), TYRR_ECOLI  (P07604), TYRR_ENTAG  (Q9ZIB7), 
TYRR_SALTI  (P0A2D8), TYRR_SALTY  (P0A2D7), VNFA_AZOVI  (P12627), 
WTSA_PANSE  (P36219), XYLR_PSEPU  (P06519), YGEV_ECOLI  (Q46802), 
YHYA_PSESN  (Q01265), YQIR_BACSU  (P54529), ZRAR_ECO57  (Q8X613), 
ZRAR_ECOLI  (P14375), ZRAR_KLEOX  (Q9APD9), ZRAR_SALTI  (Q8Z333), 
ZRAR_SALTY  (P25852)
» More

UniProtKB/Swiss-Prot
False negative sequences
16 sequences

ACOR_BACSU  (O31551), FHLA_ECOLI  (P19323), FHLA_SALTS  (E1WAA4), 
FHLA_SALTY  (P0CL46), HUPR_RHOCA  (P26408), NORR_AERHH  (A0KEJ0), 
NTRC_RHOCB  (P09432), NTRXL_RICBR (Q1RJS1), NTRXL_RICCN (Q92HC2), 
NTRXL_RICFE (Q4UL27), NTRXL_RICPR (Q9ZCY9), NTRXL_RICTY (Q68WH4), 
PGTA_SALTY  (P06184), TYRR_HAEIN  (P44694), Y4PA_RHISN  (P55610), 
YPLP_BACSU  (P54156)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
3 sequences

NIFA_AZOCH  (P56269), NTRC_VIBAL  (P19905), YFHA_KLEOX  (P21710)

		
UniProtKB/Swiss-Prot
False positive sequences
5 sequences

CLPX_BORBU  (O51557), CLPX_BORGA  (Q660R1), CLPX_CAMJE  (Q9PIM0), 
CLPX_HELHP  (Q7VGY5), YIFB_SALTY  (P57015)
» More

PDB
[Detailed view]
8 PDB

1OJL; 2BJV; 2BJW; 2C96; 2C98; 2C99; 2C9C; 2VII

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