Entry: PS00683

General information about the entry
Entry name RHODANESE_2
Accession number PS00683
Entry type PATTERN
Date JUN-1992 (CREATED); JUL-1999 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00322
Name and characterization of the entry
DescriptionRhodanese C-terminal signature.
Pattern [AV]-x(2)-[FY]-[DEAP]-G-[GSA]-[WF]-x-E-[FYW].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 32 hits in 32 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 31 hits in 31 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 26
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 96.88 %
  • Recall (true hits / (true hits + false negatives)): 54.39 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
STR1_ARATH  (O64530), STR2_ARATH  (Q24JL3), THT2_MYCBO  (Q7TWT6), 
THT2_MYCLE  (P46700), THT2_MYCTU  (P96888), THT3_MYCTU  (Q59570), 
THTM_ECO57  (P58388), THTM_ECOLI  (P31142), THTM_HUMAN  (P25325), 
THTM_MOUSE  (Q99J99), THTM_RAT    (P97532), THTR1_MYCBO (P59989), 
THTR_AZOVI  (P52197), THTR_BOVIN  (P00586), THTR_CHICK  (P25324), 
THTR_CORGL  (P71121), THTR_CRIGR  (P46635), THTR_DEIRA  (Q9RXT9), 
THTR_HALVD  (D4GYM0), THTR_HUMAN  (Q16762), THTR_METTH  (O26719), 
THTR_MOUSE  (P52196), THTR_MYCLE  (Q50036), THTR_MYCS2  (A0R4C9), 
THTR_MYCTU  (O05793), THTR_RAT    (P24329), THTR_SACER  (P16385), 
THTR_SYNE7  (P27477), THTR_YEAST  (Q08686), TSTD3_MOUSE (Q9D0B5), 
YNJE_ECOLI  (P78067)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
ACR21_ORYSJ (Q336V5), ACR22_ORYSJ (Q10SX6), CAS_ARATH   (Q9FN48), 
CDC25_ARATH (Q8GY31), MOCS3_ARATH (Q9ZNW0), STR10_ARATH (Q9SR92), 
STR11_ARATH (Q0WWT7), STR12_ARATH (Q93WI0), STR14_ARATH (Q94A65), 
STR15_ARATH (Q38853), STR16_ARATH (Q39129), STR17_ARATH (F4IPI4), 
STR18_ARATH (Q9FKW8), STR19_ARATH (Q8RUD6), STR4A_ARATH (Q56XR7), 
STR4_ARATH  (Q9M158), STR6_ARATH  (Q94AC1), STR7_ARATH  (Q1JPN0), 
STR8_ARATH  (F4I933), STR9_ARATH  (O48529), THT1_CAEEL  (P91247), 
THT2_CAEEL  (O17730), THTM_PSEAE  (Q9I452), THTM_SCHPO  (Q9USJ1), 
THTR2_MYCBO (Q7TX80), YTWF_BACSU  (O32072)
False positive hits (sequences which do not belong to the set under consideration):
FGD_MYCTU   (P96253)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1BOH; 1BOI; 1DP2; 1E0C; 1H4K; 1H4M; 1ORB; 1RHD; 1RHS; 1URH; 2ORA; 2WLR; 2WLX; 3AAX; 3AAY; 3HWI; 3HZU; 3IPO; 3IPP; 3OLH; 3UTN;

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