Entry: PS00689

General information about the entry
Entry name GLYCO_HORMONE_BETA_2
Accession number PS00689
Entry type PATTERN
Date JUN-1992 (CREATED); APR-2006 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00234
Name and characterization of the entry
DescriptionGlycoprotein hormones beta chain signature 2.
Pattern [PA]-V-A-x(2)-C-x-C-x(2)-C-x(4)-[STDAI]-[DEY]-C-x(6,8)-[PGSTAVMI]-x(2)-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 107 hits in 107 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 107 hits in 107 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 1
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 97.27 %
Comments
  • Taxonomic range: Eukaryotes
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 5,disulfide
  • `Interesting' site in the pattern: 7,disulfide
  • `Interesting' site in the pattern: 9,disulfide
  • `Interesting' site in the pattern: 13,disulfide
  • `Interesting' site in the pattern: 17,disulfide
  • VERSION: 2
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CGB1_HUMAN  (A6NKQ9), CGB2_HUMAN  (Q6NT52), CGHB_AOTNA  (Q3HRV3), 
CGHB_CALJA  (P51500), CGHB_HUMAN  (P01233), CGHB_PAPAN  (P07434), 
FSHB_AILME  (Q8WN19), FSHB_AOTNA  (Q3HRV4), FSHB_BOVIN  (P04837), 
FSHB_BUBBU  (Q6SV86), FSHB_CAPHI  (Q8HY83), FSHB_CAVPO  (Q9JK69), 
FSHB_CERNI  (Q8HY84), FSHB_GORGO  (A1BN60), FSHB_HORSE  (P01226), 
FSHB_HUMAN  (P01225), FSHB_LITCT  (Q9PS36), FSHB_MACFA  (Q6EV79), 
FSHB_MASCO  (Q6SI68), FSHB_MERUN  (Q6U830), FSHB_MONDO  (Q95J82), 
FSHB_MOUSE  (Q60687), FSHB_PANTA  (Q9BDJ0), FSHB_PANTR  (Q2PUH2), 
FSHB_PHOSU  (Q9QYB0), FSHB_PIG    (P01228), FSHB_PONPY  (A1BN61), 
FSHB_RABIT  (Q6IY73), FSHB_RAT    (P18427), FSHB_SAIBB  (Q3YC02), 
FSHB_SHEEP  (P01227), FSHB_STRCA  (P80663), FSHB_TRIVU  (O46430), 
GTHB1_ANGJA (Q9YGK3), GTHB1_CARAU (Q98848), GTHB1_CORAU (P48250), 
GTHB1_CYPCA (O13050), GTHB1_FUNHE (P30971), GTHB1_ICTPU (Q9DG81), 
GTHB1_MORSA (Q91120), GTHB1_ONCKE (P10257), GTHB1_ONCMA (P48252), 
GTHB1_THUOB (P37205), GTHB1_TRITC (Q9PW99), GTHB2_ACALA (Q90225), 
GTHB2_ANGAN (P27767), GTHB2_CARAU (Q98849), GTHB2_CLAGA (P53543), 
GTHB2_CLUPA (Q9YGH2), GTHB2_CORAU (P48251), GTHB2_CTEID (P30984), 
GTHB2_CYPCA (P01235), GTHB2_FUNHE (P30972), GTHB2_HYPMO (P37038), 
GTHB2_ICTPU (Q9DG80), GTHB2_MORSA (Q91121), GTHB2_ONCKE (P10256), 
GTHB2_ONCMA (P48253), GTHB2_ONCTS (P07732), GTHB2_THUOB (P37206), 
GTHB2_TRITC (Q9PW98), GTHB_MURCI  (P12837), LSHB_AILFU  (Q8HZR9), 
LSHB_AILME  (Q8WN18), LSHB_BALAC  (P33088), LSHB_BOVIN  (P04651), 
LSHB_CANFA  (P18842), LSHB_CERSI  (O77835), LSHB_COTJA  (P45657), 
LSHB_EQUAS  (P19794), LSHB_EQUBU  (O46641), LSHB_FELCA  (O77805), 
LSHB_GORGO  (Q2Q1P1), LSHB_HORSE  (P08751), LSHB_HUMAN  (P01229), 
LSHB_LITCT  (P80071), LSHB_MACFA  (Q6EV78), LSHB_MACRU  (O46483), 
LSHB_MELGA  (P45646), LSHB_MONDO  (Q95J85), LSHB_MOUSE  (O09108), 
LSHB_PANTA  (Q9BDI9), LSHB_PANTR  (Q2Q1P2), LSHB_PHYMC  (P25330), 
LSHB_PIG    (P01232), LSHB_PONPY  (Q2Q1P0), LSHB_RABIT  (Q6IY74), 
LSHB_RAT    (P01230), LSHB_SHEEP  (P01231), LSHB_STRCA  (P80664), 
LSHB_TRIVU  (O46482), TSHB_ANGAN  (Q08127), TSHB_ANGJA  (Q7ZZV4), 
TSHB_BOVIN  (P01223), TSHB_CANFA  (P54828), TSHB_CHICK  (O57340), 
TSHB_FELCA  (Q52R90), TSHB_HORSE  (Q28376), TSHB_HUMAN  (P01222), 
TSHB_LAMGL  (P79357), TSHB_MONDO  (Q95J88), TSHB_MOUSE  (P12656), 
TSHB_ONCMY  (P37240), TSHB_PHOSU  (Q62590), TSHB_PIG    (P01224), 
TSHB_RAT    (P04652), TSHB_SALSA  (O73824)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
CGHB_SAIBB  (Q3S2X5), GPHB5_HUMAN (Q86YW7), GPHB5_MOUSE (Q812B2)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
LSHB_PHOSU  (Q9QYA9)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1FL7; 1HCN; 1HRP; 1M92; 1QFW; 1XUL; 1XWD; 4AY9;

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission

If you would like to retrieve all the Swiss-Prot entries referenced in the DR lines of this entry (with the exception of false positive hits) , you can enter a file name. These entries will then be saved to a file under this name. (Please note that this temporary file will only be kept for 1 week.)

File name:

Format: Swiss-Prot Fasta

or