Entry: PS00689

Forthcoming changes to the profile format
General information about the entry

Entry name [info] GLYCO_HORMONE_BETA_2
Accession [info] PS00689
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); APR-2006 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00234

Name and characterization of the entry

Description [info] Glycoprotein hormones beta chain signature 2.
Pattern [info]
[PA]-V-A-x(2)-C-x-C-x(2)-C-x(4)-[STDAI]-[DEY]-C-x(6,8)-[PGSTAVMI]-x(2)-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 107 in 107 different sequences
Number of true positive hits 107 in 107 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 3
Number of 'partial' sequences 1
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 97.27 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] disulfide at position 5
Site [info] disulfide at position 7
Site [info] disulfide at position 9
Site [info] disulfide at position 13
Site [info] disulfide at position 17
Version [info] 2

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
107 sequences

CGB1_HUMAN  (A6NKQ9), CGB2_HUMAN  (Q6NT52), CGHB_AOTNA  (Q3HRV3), 
CGHB_CALJA  (P51500), CGHB_HUMAN  (P01233), CGHB_PAPAN  (P07434), 
FSHB_AILME  (Q8WN19), FSHB_AOTNA  (Q3HRV4), FSHB_BOVIN  (P04837), 
FSHB_BUBBU  (Q6SV86), FSHB_CAPHI  (Q8HY83), FSHB_CAVPO  (Q9JK69), 
FSHB_CERNI  (Q8HY84), FSHB_GORGO  (A1BN60), FSHB_HORSE  (P01226), 
FSHB_HUMAN  (P01225), FSHB_LITCT  (Q9PS36), FSHB_MACFA  (Q6EV79), 
FSHB_MASCO  (Q6SI68), FSHB_MERUN  (Q6U830), FSHB_MONDO  (Q95J82), 
FSHB_MOUSE  (Q60687), FSHB_PANTA  (Q9BDJ0), FSHB_PANTR  (Q2PUH2), 
FSHB_PHOSU  (Q9QYB0), FSHB_PIG    (P01228), FSHB_PONPY  (A1BN61), 
FSHB_RABIT  (Q6IY73), FSHB_RAT    (P18427), FSHB_SAIBB  (Q3YC02), 
FSHB_SHEEP  (P01227), FSHB_STRCA  (P80663), FSHB_TRIVU  (O46430), 
GTHB1_ANGJA (Q9YGK3), GTHB1_CARAU (Q98848), GTHB1_CORAU (P48250), 
GTHB1_CYPCA (O13050), GTHB1_FUNHE (P30971), GTHB1_ICTPU (Q9DG81), 
GTHB1_MORSA (Q91120), GTHB1_ONCKE (P10257), GTHB1_ONCMA (P48252), 
GTHB1_THUOB (P37205), GTHB1_TRITC (Q9PW99), GTHB2_ACALA (Q90225), 
GTHB2_ANGAN (P27767), GTHB2_CARAU (Q98849), GTHB2_CLAGA (P53543), 
GTHB2_CLUPA (Q9YGH2), GTHB2_CORAU (P48251), GTHB2_CTEID (P30984), 
GTHB2_CYPCA (P01235), GTHB2_FUNHE (P30972), GTHB2_HYPMO (P37038), 
GTHB2_ICTPU (Q9DG80), GTHB2_MORSA (Q91121), GTHB2_ONCKE (P10256), 
GTHB2_ONCMA (P48253), GTHB2_ONCTS (P07732), GTHB2_THUOB (P37206), 
GTHB2_TRITC (Q9PW98), GTHB_MURCI  (P12837), LSHB_AILFU  (Q8HZR9), 
LSHB_AILME  (Q8WN18), LSHB_BALAC  (P33088), LSHB_BOVIN  (P04651), 
LSHB_CANFA  (P18842), LSHB_CERSI  (O77835), LSHB_COTJA  (P45657), 
LSHB_EQUAS  (P19794), LSHB_EQUBU  (O46641), LSHB_FELCA  (O77805), 
LSHB_GORGO  (Q2Q1P1), LSHB_HORSE  (P08751), LSHB_HUMAN  (P01229), 
LSHB_LITCT  (P80071), LSHB_MACFA  (Q6EV78), LSHB_MACRU  (O46483), 
LSHB_MELGA  (P45646), LSHB_MONDO  (Q95J85), LSHB_MOUSE  (O09108), 
LSHB_PANTA  (Q9BDI9), LSHB_PANTR  (Q2Q1P2), LSHB_PHYCD  (P25330), 
LSHB_PIG    (P01232), LSHB_PONPY  (Q2Q1P0), LSHB_RABIT  (Q6IY74), 
LSHB_RAT    (P01230), LSHB_SHEEP  (P01231), LSHB_STRCA  (P80664), 
LSHB_TRIVU  (O46482), TSHB_ANGAN  (Q08127), TSHB_ANGJA  (Q7ZZV4), 
TSHB_BOVIN  (P01223), TSHB_CANFA  (P54828), TSHB_CHICK  (O57340), 
TSHB_FELCA  (Q52R90), TSHB_HORSE  (Q28376), TSHB_HUMAN  (P01222), 
TSHB_LAMGL  (P79357), TSHB_MONDO  (Q95J88), TSHB_MOUSE  (P12656), 
TSHB_ONCMY  (P37240), TSHB_PHOSU  (Q62590), TSHB_PIG    (P01224), 
TSHB_RAT    (P04652), TSHB_SALSA  (O73824)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

CGHB_SAIBB  (Q3S2X5), GPHB5_HUMAN (Q86YW7), GPHB5_MOUSE (Q812B2)

		
UniProtKB/Swiss-Prot
'Partial' sequences
1 sequence

LSHB_PHOSU  (Q9QYA9)

		
PDB
[Detailed view]
6 PDB

1FL7; 1HCN; 1HRP; 1QFW; 1XWD; 4AY9

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission