Entry: PS00690

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General information about the entry

Entry name [info] DEAH_ATP_HELICASE
Accession [info] PS00690
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); JUN-1994 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00039

Name and characterization of the entry

Description [info] DEAH-box subfamily ATP-dependent helicases signature.
Pattern [info]
[GSAH]-x-[LIVMF](3)-D-E-[ALIV]-H-[NECR].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 186 in 186 different sequences
Number of true positive hits 173 in 173 different sequences
Number of 'unknown' hits 1
Number of false positive hits 12 in 12 different sequences
Number of false negative sequences 298
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 93.51 %
Recall (true positives / (true positives + false negatives)) 36.73 %

Comments [info]

Taxonomic range [info] Archaea, Bacteriophages, Eukaryotes, Prokaryotes (Bacteria), Eukaryotic viruses
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
173 sequences

BLM_CAEEL   (O18017), BLM_CHICK   (Q9I920), BLM_DROME   (Q9VGI8), 
BLM_HUMAN   (P54132), BLM_MOUSE   (O88700), BLM_XENLA   (Q9DEY9), 
CDC28_SCHPO (Q10752), CHD1L_BOVIN (Q3B7N1), CHD1L_HUMAN (Q86WJ1), 
CHD1_BOMMO  (A9X4T1), CHD1_DROME  (Q7KU24), CHD3_CAEEL  (Q22516), 
CHD3_DROME  (O16102), CHD3_HUMAN  (Q12873), CHD4_HUMAN  (Q14839), 
CHD4_MOUSE  (Q6PDQ2), CHD5_HUMAN  (Q8TDI0), CHD5_MOUSE  (A2A8L1), 
CHD5_RAT    (D3ZD32), CHD6_HUMAN  (Q8TD26), CHD6_MOUSE  (A3KFM7), 
CHD6_RAT    (D3ZA12), CHDM_DROME  (O97159), CHL1_ASHGO  (Q750G3), 
CHL1_ASPCL  (A1CJ34), CHL1_ASPFU  (Q4WWE9), CHL1_ASPNC  (A2QY22), 
CHL1_ASPOR  (Q2U587), CHL1_CANAL  (Q5AD67), CHL1_CANGA  (Q6FKT4), 
CHL1_COCIM  (Q1E5T3), CHL1_DEBHA  (Q6BZD9), CHL1_KLULA  (Q6CIF0), 
CHL1_LODEL  (A5DUW8), CHL1_NEOFI  (A1D8E4), CHL1_PICGU  (A5DNW6), 
CHL1_PICST  (A3LN13), CHL1_SCLS1  (A7ERG1), CHL1_VANPO  (A7TTL0), 
CHL1_YARLI  (Q6CAX3), CHL1_YEAS7  (A6ZWN8), CHL1_YEAST  (P22516), 
DCL2_MAGO7  (A4RHU9), DCL2_NEUCR  (Q7SCC1), DHR1_YEAST  (Q04217), 
DHR2_YEAST  (P36009), DHX15_HUMAN (O43143), DHX15_MOUSE (O35286), 
DHX15_PONAB (Q5RAZ4), DHX15_SCHPO (O42945), DHX15_STRPU (O17438), 
DHX16_CAEEL (O45244), DHX16_DICDI (Q54MH3), DHX16_HUMAN (O60231), 
DHX16_PANTR (Q7YR39), DHX16_PIG   (Q767K6), DHX29_HUMAN (Q7Z478), 
DHX29_MOUSE (Q6PGC1), DHX29_XENLA (A3KMI0), DHX30_CHICK (Q5ZI74), 
DHX30_HUMAN (Q7L2E3), DHX30_MOUSE (Q99PU8), DHX30_PONAB (Q5R607), 
DHX30_RAT   (Q5BJS0), DHX33_HUMAN (Q9H6R0), DHX33_MOUSE (Q80VY9), 
DHX35_CAEEL (Q9BKQ8), DHX35_HUMAN (Q9H5Z1), DHX35_PONAB (Q5RBD4), 
DHX36_HUMAN (Q9H2U1), DHX36_MOUSE (Q8VHK9), DHX40_HUMAN (Q8IX18), 
DHX40_MOUSE (Q6PE54), DHX40_PONAB (Q5R864), DHX40_RAT   (Q5XI69), 
DHX57_HUMAN (Q6P158), DHX8_ARATH  (Q38953), DHX8_DICDI  (Q54F05), 
DHX8_HUMAN  (Q14562), DHX8_MOUSE  (A2A4P0), DHX9_BOVIN  (Q28141), 
DHX9_CAEEL  (Q22307), DHX9_HUMAN  (Q08211), DHX9_MOUSE  (O70133), 
DHX9_PONAB  (Q5R874), DHX9_XENLA  (Q68FK8), ER6L2_BOVIN (A3KMX0), 
ER6L2_HUMAN (Q5T890), ER6L2_MOUSE (Q9JIM3), ERCC2_ARATH (Q8W4M7), 
ERCC2_BOVIN (A6QLJ0), ERCC2_CRIGR (Q60452), ERCC2_DICDI (Q55G81), 
ERCC2_HUMAN (P18074), ERCC2_MOUSE (O08811), ETF1_FOWPN  (P21966), 
ETF1_MCV1   (Q98262), ETF1_MYXVL  (Q9Q8L9), ETF1_RFVKA  (P32096), 
ETF1_VACCA  (O93120), ETF1_VACCC  (P20634), ETF1_VACCT  (Q9JFA3), 
ETF1_VACCW  (P04308), ETF1_VAR67  (P33056), ETF1_YMTV5  (Q9QB97), 
G1P_BPPHL   (O55247), H962L_ASFB7 (Q89443), H962L_ASFK5 (P0C9A4), 
H962L_ASFM2 (Q8V9U2), H962L_ASFP4 (P0C9A2), H962L_ASFWA (P0C9A3), 
HRPA_HAEIN  (P45018), HUS2_SCHPO  (Q09811), KZ_DROME    (O46072), 
LE418_CAEEL (G5EBZ4), MFH1_SCHPO  (Q9UT23), MLE_DROME   (P24785), 
MOG1_CAEEL  (P34498), MOG5_CAEEL  (Q09530), MPH1_BOTFB  (A6RIS1), 
MPH1_CANAL  (Q5A1A0), MPH1_PICST  (A3GH78), MPH1_SCLS1  (A7EFH4), 
NPH2_MCV1   (Q98218), NPH2_MYXVL  (Q9Q8Q2), NPH2_RFVKA  (Q9Q927), 
NPH2_VACCA  (O57193), NPH2_VACCC  (P20502), NPH2_VACCT  (Q9JFC3), 
NPH2_VACCW  (P12927), NPH2_VAR67  (P33051), PRH1_SCHPO  (Q03319), 
PRP16_BOVIN (Q17R09), PRP16_HUMAN (Q92620), PRP16_SCHPO (Q9P774), 
PRP16_YEAST (P15938), PRP22_SCHPO (O42643), PRP22_YEAST (P24384), 
PRP2_YEAST  (P20095), PRP43_YEAST (P53131), RAD3_YEAST  (P06839), 
RECQ5_HUMAN (O94762), RECQ5_MOUSE (Q8VID5), RECQ5_RAT   (D4ACP5), 
RECS_BACSU  (P50729), RHA2_CAEEL  (P34305), RQL1_ARATH  (Q9FT74), 
RQL4A_ARATH (Q8L840), RQL4B_ARATH (Q9FT70), RQL5_ARATH  (Q0WVW7), 
RTEL1_CAEBR (A8WS58), RTEL1_CAEEL (Q93575), RTEL1_DANRE (P0C928), 
SGS1_YEAST  (P35187), SWR1_ASPFU  (Q4WAS9), SWR1_EMENI  (Q5ARK3), 
SWR1_GIBZE  (Q4IAK7), SWR1_NEUCR  (Q7S133), SWR1_YARLI  (Q6CA87), 
TDRD9_DANRE (B8A4F4), TTF2_HUMAN  (Q9UNY4), TTF2_MOUSE  (Q5NC05), 
UCP12_SCHPO (O94536), VF022_IIV3  (Q196X3), VF509_ASFB7 (Q65191), 
VF509_ASFK5 (P0C9B0), VF509_ASFM2 (Q89576), VF509_ASFP4 (P0C9A8), 
VF509_ASFWA (P0C9A9), Y4102_ARATH (P0CE10), YK16_SCHPO  (Q9HDY4), 
YK99_SCHPO  (Q9HE06), YUM14_USTMA (P0C7L7)
» More

UniProtKB/Swiss-Prot
False negative sequences
298 sequences

A18_FOWPN   (Q9J550), ATRX_CAEEL  (Q9U7E0), CHD1L_DANRE (Q7ZU90), 
CHD1_HUMAN  (O14646), CHD1_MOUSE  (P40201), CHD1_YEAST  (P32657), 
CHD2_HUMAN  (O14647), CHD7_CHICK  (Q06A37), CHD7_HUMAN  (Q9P2D1), 
CHD7_MOUSE  (A2AJK6), CHD8_DANRE  (B0R0I6), CHD8_HUMAN  (Q9HCK8), 
CHD8_MOUSE  (Q09XV5), CHD8_RAT    (Q9JIX5), CHD8_XENTR  (B5DE69), 
DDX11_HUMAN (Q96FC9), DDX11_MOUSE (Q6AXC6), DDX12_HUMAN (Q92771), 
DHX15_ARATH (O22899), DHX15_CAEEL (Q20875), DHX15_DICDI (Q54NJ4), 
DHX34_HUMAN (Q14147), DHX34_MOUSE (Q9DBV3), DHX37_HUMAN (Q8IY37), 
DHX57_MOUSE (Q6P5D3), DING_BACSU  (P54394), DING_MYCBO  (P64315), 
DING_MYCTO  (P9WMR4), DING_MYCTU  (P9WMR5), DING_PHOPR  (P29741), 
DING_STAA3  (Q2FGY5), DING_STAA8  (Q2FYH5), DING_STAAB  (Q2YY51), 
DING_STAAC  (Q5HFW8), DING_STAAM  (Q99U34), DING_STAAN  (Q7A5K4), 
DING_STAAR  (Q6GGV4), DING_STAAS  (Q6G9A7), DING_STAAW  (Q8NWP2), 
DING_STAEQ  (Q5HP88), DING_STAES  (Q8CP71), DING_STAHJ  (Q4L6F9), 
DING_STAS1  (Q49XR1), EP400_HUMAN (Q96L91), ETF1_MSEPV  (Q9YVX9), 
FANCJ_CHICK (Q3YK19), FANCJ_HUMAN (Q9BX63), FANCJ_MOUSE (Q5SXJ3), 
FANCM_HUMAN (Q8IYD8), FANCM_MOUSE (Q8BGE5), GTA_NPVAC   (P41447), 
GTA_NPVOP   (O10302), HRP1_SCHPO  (Q9US25), HRP3_SCHPO  (O14139), 
HRPA_ECOLI  (P43329), ISW1_CAEEL  (P41877), ISW1_YEAST  (P38144), 
ISW2_ARATH  (Q8RWY3), ISW2_ORYSJ  (Q7G8Y3), ISWI_DROME  (Q24368), 
MED34_ARATH (Q9FT73), MFH2_SCHPO  (Q9HE09), MPH1_ASHGO  (Q75AA7), 
MPH1_ASPCL  (A1CS00), MPH1_ASPFC  (B0XMV6), MPH1_ASPFU  (Q4WKB5), 
MPH1_ASPNC  (A2Q8R2), MPH1_ASPOR  (Q2URJ5), MPH1_ASPTN  (Q0CWI2), 
MPH1_CANGA  (Q6FPQ3), MPH1_CHAGB  (Q2HG76), MPH1_COCIM  (Q1DY43), 
MPH1_DEBHA  (Q6BRF0), MPH1_KLULA  (Q6CQX2), MPH1_MAGO7  (A4RN08), 
MPH1_NEOFI  (A1D4V5), MPH1_NEUCR  (Q7SDF3), MPH1_VANPO  (A7TSV4), 
MPH1_YEAS7  (A6ZVS0), MPH1_YEAST  (P40562), NPH2_FOWPN  (O72904), 
NPH2_MSEPV  (Q9YW06), POLG_DEN1S  (P33478), POLG_DEN26  (P29990), 
POLG_DEN27  (P29991), POLG_DEN2J  (P07564), POLG_DEN2P  (P12823), 
POLG_DEN2T  (P27914), POLG_DEN3P  (P27915), POLG_DEN4D  (P09866), 
POLG_JAEV1  (P27395), POLG_JAEV5  (P19110), POLG_JAEVJ  (P32886), 
POLG_KUNJM  (P14335), POLG_LANVT  (P29837), POLG_MVEV5  (P05769), 
POLG_POWVL  (Q04538), POLG_TBEVH  (Q01299), POLG_TBEVS  (P07720), 
POLG_TBEVW  (P14336), POLG_WNV    (P06935), RAD15_SCHPO (P26659), 
RAD16_YEAST (P31244), RAPA_ACTP2  (A3MZ32), RAPA_ACTP7  (B3H0F9), 
RAPA_ACTPJ  (B0BT63), RAPA_ACTSZ  (A6VQU2), RAPA_AERHH  (A0KGL5), 
RAPA_AERS4  (A4SR75), RAPA_ALISL  (B6EPV7), RAPA_CITK8  (A8ALP3), 
RAPA_CROS8  (A7MIC1), RAPA_ECO24  (A7ZHF0), RAPA_ECO27  (B7UIA5), 
RAPA_ECO45  (B7MAI2), RAPA_ECO55  (B7L4I0), RAPA_ECO57  (P60241), 
RAPA_ECO7I  (B7NHG5), RAPA_ECO81  (B7MNR6), RAPA_ECO8A  (B7M0F4), 
RAPA_ECOBW  (C4ZPY3), RAPA_ECOHS  (A7ZW09), RAPA_ECOK1  (A1A7A6), 
RAPA_ECOL5  (Q0TLT1), RAPA_ECOL6  (Q8FL92), RAPA_ECOLC  (B1IRB9), 
RAPA_ECOLI  (P60240), RAPA_ECOLU  (B7N7T3), RAPA_ECOSE  (B6HZ39), 
RAPA_ECOSM  (B1LFZ3), RAPA_ECOUT  (Q1RGE0), RAPA_ENT38  (A4W6G3), 
RAPA_ERWT9  (B2VGQ6), RAPA_ESCF3  (B7LVT0), RAPA_HAEDU  (Q7VKV0), 
RAPA_HAEI8  (Q4QMI0), RAPA_HAEIE  (A5UAT0), RAPA_HAEIN  (P44781), 
RAPA_HISS1  (Q0I5G1), RAPA_HISS2  (B0URM0), RAPA_KLEP3  (B5Y1Y4), 
RAPA_KLEP7  (A6T4J7), RAPA_PASMU  (Q9CK01), RAPA_PECAS  (Q6D0E6), 
RAPA_PECCP  (C6DEY0), RAPA_PHOLL  (Q7N8V1), RAPA_PHOPR  (Q6LV34), 
RAPA_PROMH  (B4F2H6), RAPA_PSE14  (Q48LP5), RAPA_PSEA8  (B7V6T4), 
RAPA_PSEAE  (Q9HYT6), RAPA_PSEE4  (Q1IDS5), RAPA_PSEF5  (Q4KH47), 
RAPA_PSEFS  (C3K902), RAPA_PSEP1  (A5VZN0), RAPA_PSEPF  (Q3KGV8), 
RAPA_PSEPG  (B0KU95), RAPA_PSEPK  (Q88NR0), RAPA_PSEPW  (B1J1F5), 
RAPA_PSESM  (Q87XS2), RAPA_PSEU2  (Q4ZPQ0), RAPA_PSEU5  (A4VNR4), 
RAPA_SALA4  (B5F778), RAPA_SALAR  (A9MQF6), RAPA_SALCH  (Q57TG4), 
RAPA_SALDC  (B5FI41), RAPA_SALEP  (B5R1T4), RAPA_SALNS  (B4SU17), 
RAPA_SALPA  (Q5PDF0), RAPA_SALPB  (A9MYN1), RAPA_SALPC  (C0Q5F4), 
RAPA_SALPK  (B5BL33), RAPA_SALSV  (B4TWU3), RAPA_SALTI  (Q8Z9J4), 
RAPA_SALTY  (Q8ZRV8), RAPA_SERP5  (A8G9P6), RAPA_SHEAM  (A1SAC7), 
RAPA_SHEB2  (B8ECC6), RAPA_SHEB5  (A3D001), RAPA_SHEB8  (A6WSX5), 
RAPA_SHEB9  (A9L3Y2), RAPA_SHEDO  (Q12RU8), RAPA_SHEFN  (Q07XC8), 
RAPA_SHEHH  (B0TVM8), RAPA_SHELP  (A3QA31), RAPA_SHEON  (Q8EJ93), 
RAPA_SHEPA  (A8H8X8), RAPA_SHEPC  (A4YAN1), RAPA_SHEPW  (B8CIB4), 
RAPA_SHESA  (A0KSP4), RAPA_SHESH  (A8FQW4), RAPA_SHESM  (Q0HMR2), 
RAPA_SHESR  (Q0HR19), RAPA_SHESW  (A1RFP5), RAPA_SHEWM  (B1KJA5), 
RAPA_SHIB3  (B2U265), RAPA_SHIBS  (Q326H6), RAPA_SHIDS  (Q32K36), 
RAPA_SHIF8  (Q0T8D8), RAPA_SHIFL  (Q7UDT5), RAPA_SHISS  (Q3Z5V2), 
RAPA_SODGM  (Q2NVX0), RAPA_VIBC3  (A5F5C5), RAPA_VIBCB  (A7MSB2), 
RAPA_VIBCH  (Q9KP70), RAPA_VIBCM  (C3LR47), RAPA_VIBF1  (Q5E881), 
RAPA_VIBFM  (B5FGE9), RAPA_VIBPA  (Q87LD0), RAPA_VIBSL  (B7VIC2), 
RAPA_VIBVU  (Q8DCG1), RAPA_VIBVY  (Q7MHE6), RAPA_YERE8  (A1JJG0), 
RAPA_YERP3  (A7FM96), RAPA_YERPA  (Q1C1Y2), RAPA_YERPB  (B2K4B3), 
RAPA_YERPE  (Q8ZII0), RAPA_YERPG  (A9R154), RAPA_YERPN  (Q1CMQ6), 
RAPA_YERPP  (A4TQB3), RAPA_YERPS  (Q66EN4), RAPA_YERPY  (B1JKV7), 
RECQ4_HUMAN (O94761), RECQ4_MOUSE (Q75NR7), RECQ_BACSU  (O34748), 
RECQ_ECOLI  (P15043), RECQ_HAEIN  (P71359), RECQ_PASMU  (Q9CL21), 
RECQ_SALTY  (P40724), RECQ_SYNY3  (P73421), RHP16_SCHPO (P79051), 
RQL3_ARATH  (Q9FT72), RTEL1_AEDAE (Q16X92), RTEL1_ANOGA (Q7QEI1), 
RTEL1_BOVIN (A4K436), RTEL1_CULQU (B0W9F4), RTEL1_DROAN (B3MSG8), 
RTEL1_DROER (B3NSW1), RTEL1_DROGR (B4JNS2), RTEL1_DROME (Q9W484), 
RTEL1_DROMO (B4L1Z2), RTEL1_DROPE (B4GU19), RTEL1_DROPS (Q29FS3), 
RTEL1_DROSE (B4I0K4), RTEL1_DROVI (B4M891), RTEL1_DROWI (B4NDG5), 
RTEL1_DROYA (B4PZB4), RTEL1_HUMAN (Q9NZ71), RTEL1_MOUSE (Q0VGM9), 
RTEL1_MUSSP (Q6H1L8), RTEL1_PONAB (Q5RE34), RTEL1_RAT   (Q5RJZ1), 
SM3L1_ARATH (Q9FF61), SM3L2_ARATH (Q9FNI6), SM3L3_ARATH (Q9FIY7), 
SMCA1_HUMAN (P28370), SMCA5_HUMAN (O60264), SMCA5_MOUSE (Q91ZW3), 
SWR1_ASHGO  (Q759G7), SWR1_CANAL  (Q59U81), SWR1_CANGA  (Q6FK48), 
SWR1_CRYNB  (P0CO19), SWR1_CRYNJ  (P0CO18), SWR1_DEBHA  (Q6BKC2), 
SWR1_KLULA  (Q6CJ38), SWR1_SCHPO  (O13682), SWR1_USTMA  (Q4P328), 
SWR1_YEAST  (Q05471), TTF2_DROME  (P34739), VF022_IIV6  (Q9QSK4), 
VF113_ASFB7 (Q89525), VF113_ASFK5 (P0C9A7), VF113_ASFM2 (Q89425), 
VF113_ASFP4 (P0C9A5), VF113_ASFWA (P0C9A6), VF706_ASFB7 (Q89581), 
VF706_ASFK5 (P0C9B3), VF706_ASFM2 (Q89926), VF706_ASFP4 (P0C9B1), 
VF706_ASFWA (P0C9B2), VF859_ASFB7 (Q65143), VF859_ASFK5 (P0C8H0), 
VF859_ASFM2 (P0C8H1), VF859_ASFP4 (P0C8H2), VF859_ASFWA (P0C8H3), 
WRN_CAEEL   (Q19546), WRN_HUMAN   (Q14191), WRN_MOUSE   (O09053), 
WRN_XENLA   (O93530), Y007_SIFVH  (Q914M3), Y022_SIFVH  (Q914K8), 
Y1505_METJA (Q58900), Y387_HAEIN  (P44680), Y942_METJA  (Q58352), 
YBMA_SCHPO  (Q10332), YOAA_ECOLI  (P76257), YTDC2_HUMAN (Q9H6S0), 
YTDC2_MOUSE (B2RR83)
» More

UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

YHF0_YEAST  (P38721)

		
UniProtKB/Swiss-Prot
False positive sequences
12 sequences

EXD1_DANRE  (Q0P3U3), EXOC4_HUMAN (Q96A65), LEVR_BACSU  (P23914), 
RUVB_BDEBA  (P61529), RUVB_BORAP  (Q0SPE2), RUVB_BORBU  (P70828), 
RUVB_BORGA  (Q662Z0), RUVB_RHOBA  (Q7UPG4), RUVB_TREDE  (P61538), 
RUVB_TREPA  (P96115), TRPG_SULSO  (Q06129), YKP4_KLULA  (P05470)
» More

PDB
[Detailed view]
5 PDB

2XAU; 3KX2; 3LLM; 4CDG; 4CGZ

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View entry in raw text format (no links)
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