Entry: PS00691

General information about the entry
Entry name DNA_PHOTOLYASES_1_2
Accession number PS00691
Entry type PATTERN
Date JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); APR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00331
Name and characterization of the entry
DescriptionDNA photolyases class 1 signature 2.
Pattern [DN]-R-x-R-[LIVM]-[LIVMN]-x-[STA]-[STAQ]-F-[LIVMFA]-x-K-x-L-x(2,3)-W- [KRQ].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_06, total number of sequence entries in that release: 540261.
  • Total number of hits in UniProtKB/Swiss-Prot: 16 hits in 16 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 16 hits in 16 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 3
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 84.21 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
CRY1_ARATH  (Q43125), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 
PHR_BACPE   (Q04449), PHR_BUCAI   (P57386), PHR_BUCBP   (Q89AJ9), 
PHR_ECOLI   (P00914), PHR_HALSA   (Q9HQ46), PHR_NEUCR   (P27526), 
PHR_SALTY   (P25078), PHR_STRGR   (P12768), PHR_SYNY3   (Q55081), 
PHR_THET2   (P61496), PHR_THET8   (P61497), PHR_VIBCH   (Q9KNA8), 
PHR_YEAST   (P05066)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
PHR_SYNP6   (P05327), UVR3_ARATH  (O48652), UVR3_ORYSJ  (Q0E2Y1)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

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PDB
[Detailed view]		 1DNP; 1IQR; 1IQU; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09;

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