Entry: PS00691

Forthcoming changes to the profile format
General information about the entry

Entry name [info] DNA_PHOTOLYASES_1_2
Accession [info] PS00691
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00331

Name and characterization of the entry

Description [info] DNA photolyases class 1 signature 2.
Pattern [info]
[DN]-R-x-R-[LIVM]-[LIVMN]-x-[STA]-[STAQ]-F-[LIVMFA]-x-K-x-L-x(2,3)-W-
[KRQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 16 in 16 different sequences
Number of true positive hits 16 in 16 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 84.21 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
16 sequences

CRY1_ARATH  (Q43125), CRY1_SINAL  (P40115), CRY2_ARATH  (Q96524), 
PHR_BACPE   (Q04449), PHR_BUCAI   (P57386), PHR_BUCBP   (Q89AJ9), 
PHR_ECOLI   (P00914), PHR_HALSA   (Q9HQ46), PHR_NEUCR   (P27526), 
PHR_SALTY   (P25078), PHR_STRGR   (P12768), PHR_SYNY3   (Q55081), 
PHR_THET2   (P61496), PHR_THET8   (P61497), PHR_VIBCH   (Q9KNA8), 
PHR_YEAST   (P05066)
» More

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

PHR_SYNP6   (P05327), UVR3_ARATH  (O48652), UVR3_ORYSJ  (Q0E2Y1)

		
PDB
[Detailed view]
15 PDB

1DNP; 1IQR; 1IQU; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission