Entry: PS00691

General information about the entry

Entry name [info] DNA_PHOTOLYASES_1_2
Accession [info] PS00691
Entry type [info] PATTERN
Date [info] JUN-1992 (CREATED); DEC-2004 (DATA UPDATE); JUN-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00331

Name and characterization of the entry

Description [info] DNA photolyases class 1 signature 2.
Pattern [info]
[DN]-R-x-R-[LIVM]-[LIVMN]-x-[STA]-[STAQ]-F-[LIVMFA]-x-K-x-L-x(2,3)-W-
[KRQ].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_07 which contains 551'705 sequence entries.


Total number of hits 17 in 17 different sequences
Number of true positive hits 17 in 17 different sequences
Number of 'unknown' hits 0
Number of false positive hits 0
Number of false negative sequences 3
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 85.00 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
17 sequences

CRY1_ARATH  (Q43125    ), CRY1_SINAL  (P40115    ), CRY2_ARATH  (Q96524    ), 
PHRA_AGRFC  (A9CJC9    ), PHR_BACPE   (Q04449    ), PHR_BUCAI   (P57386    ), 
PHR_BUCBP   (Q89AJ9    ), PHR_ECOLI   (P00914    ), PHR_HALSA   (Q9HQ46    ), 
PHR_NEUCR   (P27526    ), PHR_SALTY   (P25078    ), PHR_STRGR   (P12768    ), 
PHR_SYNY3   (Q55081    ), PHR_THET2   (P61496    ), PHR_THET8   (P61497    ), 
PHR_VIBCH   (Q9KNA8    ), PHR_YEAST   (P05066    )
» more

UniProtKB/Swiss-Prot
False negative sequences
3 sequences

PHR_SYNP6   (P05327    ), UVR3_ARATH  (O48652    ), UVR3_ORYSJ  (Q0E2Y1    )

		
PDB
[Detailed view]
16 PDB

1DNP; 1IQR; 1IQU; 1OWL; 1OWM; 1OWN; 1OWO; 1OWP; 1QNF; 1TEZ; 1U3C; 1U3D; 2J07; 2J08; 2J09; 4U63
» more

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