Entry: PS00692

General information about the entry
Entry name NIFH_FRXC_2
Accession number PS00692
Entry type PATTERN
Date JUN-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00580
Name and characterization of the entry
DescriptionNifH/frxC family signature 2.
Pattern D-x-L-G-D-V-V-C-G-G-F-[AGSP]-x-P.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 226 hits in 226 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 226 hits in 226 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 0 hits in 0 different sequences
  • Number of known missed hits: 4
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 3
  • Precision (true hits / (true hits + false positives)): 100.00 %
  • Recall (true hits / (true hits + false negatives)): 98.26 %
Comments
  • Taxonomic range: Archaea, Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 8,iron_sulfur
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
BCHL_BRASB  (A5EQ80), BCHL_BRASO  (A4YNP4), BCHL_CHLAA  (Q9F6X3), 
BCHL_CHLAD  (B8G943), BCHL_CHLCH  (Q3APL1), BCHL_CHLL2  (B3EGV3), 
BCHL_CHLP8  (B3QQZ4), BCHL_CHLPB  (B3ENS3), BCHL_CHLPD  (A1BIZ7), 
BCHL_CHLSY  (B9LKM2), BCHL_CHLT3  (B3QZE1), BCHL_CHLTE  (Q9F714), 
BCHL_DINSH  (A8LQ30), BCHL_HALHL  (A1WXI6), BCHL_HELMI  (B0TBM6), 
BCHL_HELMO  (Q9ZGF0), BCHL_JANSC  (Q28W37), BCHL_METC4  (B7KVV7), 
BCHL_METEP  (A9W9E2), BCHL_METPB  (B1ZBP2), BCHL_METRJ  (B1LSF9), 
BCHL_METS4  (B0UDK8), BCHL_METSB  (B8EPX5), BCHL_PELLD  (Q3B6C6), 
BCHL_PELPB  (B4SC79), BCHL_PROA2  (B4S591), BCHL_PROVI  (A4SCU6), 
BCHL_RHOCA  (P0CY53), BCHL_RHOCB  (D5ANS3), BCHL_RHOCS  (B6ITW5), 
BCHL_RHOP2  (Q2ISY9), BCHL_RHOP5  (Q07RY2), BCHL_RHOPA  (Q6N9K0), 
BCHL_RHOPB  (Q219Q8), BCHL_RHOPS  (Q132N5), BCHL_RHORT  (Q2RWS1), 
BCHL_RHORU  (Q9L8J5), BCHL_RHOS1  (A3PL19), BCHL_RHOS4  (Q9RFD6), 
BCHL_RHOS5  (A4WR94), BCHL_RHOSK  (B9KK27), BCHL_ROSCS  (A7NJG1), 
BCHL_ROSDO  (Q16DS2), BCHL_ROSS1  (A5UUJ4), BCHL_RUBGI  (Q9JPA5), 
BCHX_RHOCB  (P26177), BCHX_RHOS4  (Q02431), CHLL_ACAM1  (B0C7T2), 
CHLL_ADICA  (Q85FG5), CHLL_ANAVT  (Q3MAN6), CHLL_ANGEV  (A2T392), 
CHLL_CHAGL  (Q8LU58), CHLL_CHAVU  (Q1ACE0), CHLL_CHLAT  (Q19V52), 
CHLL_CHLPR  (Q6VQA9), CHLL_CHLRE  (Q00469), CHLL_CHLVU  (P56291), 
CHLL_CYAP4  (B8HUQ3), CHLL_CYAP8  (B7JYK3), CHLL_CYAPA  (P48110), 
CHLL_GLOVI  (Q7NI14), CHLL_LARDC  (Q695L6), CHLL_LEPTE  (A6YGA4), 
CHLL_MARPO  (P06267), CHLL_MESVI  (Q9MUM2), CHLL_MICAN  (B0JVB1), 
CHLL_NEPOL  (Q9T399), CHLL_NOSP7  (B2IUL7), CHLL_NOSS1  (Q8YM62), 
CHLL_OLTVI  (Q20EX9), CHLL_PHYPA  (Q6YXQ7), CHLL_PICAB  (O47041), 
CHLL_PINCO  (P26181), CHLL_PINKO  (Q85WT6), CHLL_PINTH  (P41645), 
CHLL_PLEBO  (Q00237), CHLL_POLAC  (P36439), CHLL_PORPU  (P51187), 
CHLL_PORYE  (Q1XDV0), CHLL_PROM0  (A3PBR7), CHLL_PROM1  (A2C0Z9), 
CHLL_PROM2  (A8G3Q8), CHLL_PROM3  (A2C7T4), CHLL_PROM4  (A9BEG6), 
CHLL_PROM5  (A2BVK5), CHLL_PROM9  (Q31BZ1), CHLL_PROMA  (Q7VD39), 
CHLL_PROMM  (Q7V6E7), CHLL_PROMP  (Q7V2D7), CHLL_PROMS  (A2BQ24), 
CHLL_PROMT  (Q46GN6), CHLL_SCEOB  (Q1KVR9), CHLL_STAPU  (Q32RZ7), 
CHLL_STIHE  (Q06SC7), CHLL_SYNE7  (P54207), CHLL_SYNJA  (Q2JS74), 
CHLL_SYNJB  (Q2JMP3), CHLL_SYNP2  (Q53450), CHLL_SYNP6  (Q5N5U1), 
CHLL_SYNPW  (A5GJI1), CHLL_SYNPX  (Q7U5I2), CHLL_SYNR3  (A5GUB0), 
CHLL_SYNS3  (Q0I8P4), CHLL_SYNS9  (Q3AWT4), CHLL_SYNSC  (Q3ALL9), 
CHLL_SYNY3  (P28373), CHLL_THEEB  (Q8DGH0), CHLL_TRIEI  (Q115L1), 
CHLL_ZYGCR  (Q32RK7), NIFH1_ANAVT (P0A3S1), NIFH1_AZOC5 (P26251), 
NIFH1_AZOCH (P26248), NIFH1_AZOVI (P00459), NIFH1_CLOPA (P00456), 
NIFH1_MASLA (Q47917), NIFH1_METBA (P54799), NIFH1_METIV (P51602), 
NIFH1_METTH (O27602), NIFH1_METTL (P25767), NIFH1_METTM (Q50785), 
NIFH1_NOSS1 (P00457), NIFH1_PAEDU (Q9AKT8), NIFH1_RHOCA (P0CY95), 
NIFH1_RHOCB (D5ANI3), NIFH2_ANAVT (Q44484), NIFH2_AZOC5 (P26252), 
NIFH2_AZOCH (P06118), NIFH2_AZOVI (P15335), NIFH2_CLOPA (P09552), 
NIFH2_MASLA (Q47921), NIFH2_METBA (P54800), NIFH2_METIV (P08624), 
NIFH2_METTH (O26739), NIFH2_METTL (P08625), NIFH2_NOSS1 (O30577), 
NIFH2_PAEDU (Q9AKT4), NIFH2_RHOCA (Q07942), NIFH3_AZOVI (P16269), 
NIFH3_CLOPA (P09553), NIFH4_CLOPA (P22548), NIFH5_CLOPA (P09554), 
NIFH6_CLOPA (P09555), NIFH_ACIF2  (B7JA99), NIFH_ACIF5  (B5ER76), 
NIFH_ALCFA  (Q44044), NIFH_ALKMQ  (A6TTY3), NIFH_ANASL  (P33178), 
NIFH_AZOBR  (P17303), NIFH_AZOPC  (B6YRI6), NIFH_BRAJA  (P06117), 
NIFH_BRASP  (P00463), NIFH_CHLCH  (Q3AR70), NIFH_CHLL2  (B3EH88), 
NIFH_CHLP8  (B3QQ12), NIFH_CHLPB  (B3EL81), NIFH_CHLPD  (A1BEH0), 
NIFH_CHLTE  (Q8KC92), NIFH_CLOAB  (Q97ME5), NIFH_CLOCB  (Q59270), 
NIFH_CYAA5  (O07641), NIFH_CYAP4  (B8HWE3), NIFH_CYAP7  (B7KG76), 
NIFH_CYAP8  (Q55028), NIFH_DECAR  (Q47G67), NIFH_DEHE1  (Q3Z7C7), 
NIFH_DESAA  (B8FAC4), NIFH_DESAD  (C6BX34), NIFH_DESAH  (C0QKK8), 
NIFH_DESAP  (B1I0Y8), NIFH_DESGI  (P71156), NIFH_DESMR  (C4XRK2), 
NIFH_DESRM  (A4J8C2), NIFH_ERWCT  (Q6D2Y8), NIFH_FRAAL  (P08925), 
NIFH_FRASC  (Q2J4F8), NIFH_FRASE  (Q47922), NIFH_FRASN  (A8L2C4), 
NIFH_FRASP  (P46034), NIFH_GLUDA  (Q9ZIE4), NIFH_HERSE  (P77873), 
NIFH_KLEP3  (B5XPH2), NIFH_KLEPN  (P00458), NIFH_MAGSM  (A0L6X0), 
NIFH_METHJ  (Q2FUB7), NIFH_METJA  (Q58289), NIFH_METMA  (Q8PYY0), 
NIFH_METMI  (P0CW56), NIFH_METMJ  (A3CWW3), NIFH_METMP  (P0CW57), 
NIFH_METNO  (B8ITG7), NIFH_METS4  (B0UAK2), NIFH_METVO  (P06119), 
NIFH_NOSCO  (P26250), NIFH_NOSMU  (Q09158), NIFH_NOSS6  (Q51296), 
NIFH_PELLD  (Q3B2P6), NIFH_PELPB  (B4SC59), NIFH_PLEBO  (Q00240), 
NIFH_PROA2  (B4S9H5), NIFH_PROVI  (A4SFU6), NIFH_PSEU5  (A4VJ70), 
NIFH_RHIET  (P00462), NIFH_RHILO  (Q98AP7), NIFH_RHILT  (P00461), 
NIFH_RHIME  (P00460), NIFH_RHISN  (P19068), NIFH_RHOP2  (Q2J1I1), 
NIFH_RHOPS  (Q13C78), NIFH_RHORU  (P22921), NIFH_RHOS1  (A3PLS9), 
NIFH_RHOS4  (Q3J0H1), NIFH_RHOSH  (O31183), NIFH_ROSCS  (A7NR80), 
NIFH_ROSS1  (A5USK5), NIFH_SYNFM  (A0LH11), NIFH_SYNJA  (Q2JTL7), 
NIFH_SYNJB  (Q2JP78), NIFH_TERTT  (C5BTB0), NIFH_THIFE  (P06661), 
NIFH_TOLAT  (C4LAS5), NIFH_TRIAZ  (P0A3S2), NIFH_TRIEI  (O34106), 
NIFH_TRITH  (P26254), NIFH_UNCMA  (Q0W443), NIFH_WOLSU  (Q7M8U8), 
NIFH_ZYMMO  (Q5NLG3)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
BCHL_ACIRU  (Q9WXB7), CHLL_ANTFO  (Q85A82), CHLL_CYCTA  (A6H5Q2), 
CHLL_HUPLU  (Q5SCY9)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
NIFH_ENTAG  (P26249), NIFH_NOSSN  (P52336), NIFH_RHILE  (P20623)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1CP2; 1FP6; 1G1M; 1G5P; 1M1Y; 1M34; 1N2C; 1NIP; 1XD8; 1XD9; 2AFH; 2AFI; 2AFK; 2NIP; 2YNM; 3FWY;

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