Entry: PS00699

General information about the entry
Entry name NITROGENASE_1_1
Accession number PS00699
Entry type PATTERN
Date DEC-1992 (CREATED); NOV-1995 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00085
Name and characterization of the entry
DescriptionNitrogenases component 1 alpha and beta subunits signature 1.
Pattern [LIVMFYH]-[LIVMFST]-H-[AG]-[AGSP]-[LIVMNQA]-[AG]-C.
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 87 hits in 87 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 79 hits in 79 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 1 hits in 1 different sequences
  • Number of false hits (on unrelated proteins): 7 hits in 7 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 2
  • Precision (true hits / (true hits + false positives)): 91.86 %
  • Recall (true hits / (true hits + false negatives)): 92.94 %
Comments
  • Taxonomic range: Archaea, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • `Interesting' site in the pattern: 8,iron_sulfur(?)
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
ANFD_AZOVI  (P16266), ANFD_CLOHU  (Q46082), ANFD_HELGE  (O68955), 
ANFD_RHOCA  (Q07933), ANFK_AZOVI  (P16267), ANFK_CLOHU  (Q46084), 
ANFK_RHOCA  (Q07935), NIFD_ALCFA  (Q44045), NIFD_AZOBR  (P25313), 
NIFD_AZOVI  (P07328), NIFD_BRAJA  (P06121), NIFD_BRASP  (P06120), 
NIFD_CLOPA  (P00467), NIFD_CYAA5  (O07642), NIFD_CYAP8  (Q55029), 
NIFD_FRAAL  (Q02452), NIFD_HERSE  (P77874), NIFD_KLEPN  (P00466), 
NIFD_METBA  (P55170), NIFD_METTL  (P20620), NIFD_NOSCO  (P52337), 
NIFD_NOSS1  (P00464), NIFD_PLEBO  (Q00239), NIFD_RHICP  (P06769), 
NIFD_RHILT  (P00465), NIFD_RHISN  (P19066), NIFD_RHOCA  (P08717), 
NIFD_THIFE  (P06662), NIFE_AZOVI  (P08293), NIFE_BRAJA  (P26506), 
NIFE_CLOPA  (P10996), NIFE_CYAP8  (O07355), NIFE_KLEPN  (P08737), 
NIFE_METBA  (P51755), NIFE_METMI  (P0CW54), NIFE_METMP  (P0CW55), 
NIFE_METTH  (O27607), NIFE_METTM  (P95297), NIFE_NOSS1  (Q44144), 
NIFE_RHILO  (Q98AP4), NIFE_RHIME  (Q92ZL2), NIFE_RHISN  (P55673), 
NIFE_RHOCA  (P19055), NIFK_AZOBR  (P25314), NIFK_AZOVI  (P07329), 
NIFK_BRAJA  (P20621), NIFK_BRASP  (P06122), NIFK_CLOPA  (P11347), 
NIFK_CYAA5  (O07643), NIFK_CYAP8  (Q55030), NIFK_FRAAL  (Q57118), 
NIFK_HERSE  (P77875), NIFK_KLEPN  (P09772), NIFK_METBA  (P51754), 
NIFK_METMI  (P0CW52), NIFK_METMP  (P0CW53), NIFK_METTH  (O27606), 
NIFK_METTM  (P95296), NIFK_RHISN  (P19067), NIFK_THIFE  (P15052), 
NIFN_AZOVI  (P10336), NIFN_BRAJA  (P26507), NIFN_CYAP8  (O07356), 
NIFN_HERSE  (O87627), NIFN_KLEPN  (P08738), NIFN_NOSS1  (Q44145), 
NIFN_RHILO  (Q98AP3), NIFN_RHIME  (P12781), NIFN_RHISN  (P55674), 
NIFN_RHOCA  (P19077), VNFD_AZOCH  (P15332), VNFD_AZOPA  (O68953), 
VNFD_AZOSA  (O68954), VNFD_AZOVI  (P16855), VNFK_ANAVT  (Q57302), 
VNFK_AZOCH  (P15334), VNFK_AZOPA  (O68949), VNFK_AZOSA  (O68952), 
VNFK_AZOVI  (P16856)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
NIFD_METMI  (P0CW50), NIFD_METMP  (P0CW51), NIFD_METTH  (O27605), 
NIFD_METTM  (Q50788), NIFK_METTL  (P20622), NIFK_NOSS1  (P00468)
`Potential' hits (partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences):
NIFD_ANASL  (P33177), NIFD_METIV  (P51605)
Sequences which could potentially belong to the set under consideration:
Y584_MYCTU  (O86365)
False positive hits (sequences which do not belong to the set under consideration):
CETP_CHICK  (Q3V6R6), MDGA1_CHICK (Q0WYX8), MDGA1_HUMAN (Q8NFP4), 
MDGA1_MOUSE (Q0PMG2), MDGA1_RAT   (P85171), NAGA_VIBFU  (P96166), 
Y025_OSHVF  (Q6R7J8)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]
1FP4; 1G20; 1G21; 1H1L; 1L5H; 1LFX; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2AFK; 2MIN; 3K1A; 3MIN; 3U7Q;

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