Entry: PS00699

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General information about the entry

Entry name [info] NITROGENASE_1_1
Accession [info] PS00699
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); NOV-1995 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00085

Name and characterization of the entry

Description [info] Nitrogenases component 1 alpha and beta subunits signature 1.
Pattern [info]
[LIVMFYH]-[LIVMFST]-H-[AG]-[AGSP]-[LIVMNQA]-[AG]-C.

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 87 in 87 different sequences
Number of true positive hits 79 in 79 different sequences
Number of 'unknown' hits 1
Number of false positive hits 7 in 7 different sequences
Number of false negative sequences 6
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 91.86 %
Recall (true positives / (true positives + false negatives)) 92.94 %

Comments [info]

Taxonomic range [info] Archaea, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Site [info] iron_sulfur(?) at position 8
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
79 sequences

ANFD_AZOVI  (P16266), ANFD_CLOHU  (Q46082), ANFD_HELGE  (O68955), 
ANFD_RHOCA  (Q07933), ANFK_AZOVI  (P16267), ANFK_CLOHU  (Q46084), 
ANFK_RHOCA  (Q07935), NIFD_ACIFR  (P06662), NIFD_ALCFA  (Q44045), 
NIFD_AZOBR  (P25313), NIFD_AZOVI  (P07328), NIFD_BRADU  (P06121), 
NIFD_BRASP  (P06120), NIFD_CLOPA  (P00467), NIFD_CYAA5  (O07642), 
NIFD_CYAP8  (Q55029), NIFD_FRAAL  (Q02452), NIFD_HERSE  (P77874), 
NIFD_KLEPN  (P00466), NIFD_LEPBY  (Q00239), NIFD_METBA  (P55170), 
NIFD_METTL  (P20620), NIFD_NOSCO  (P52337), NIFD_NOSS1  (P00464), 
NIFD_RHICP  (P06769), NIFD_RHILT  (P00465), NIFD_RHISN  (P19066), 
NIFD_RHOCA  (P08717), NIFE_AZOVI  (P08293), NIFE_BRADU  (P26506), 
NIFE_CLOPA  (P10996), NIFE_CYAP8  (O07355), NIFE_KLEPN  (P08737), 
NIFE_METBA  (P51755), NIFE_METMI  (P0CW54), NIFE_METMP  (P0CW55), 
NIFE_METTH  (O27607), NIFE_METTM  (P95297), NIFE_NOSS1  (Q44144), 
NIFE_RHILO  (Q98AP4), NIFE_RHIME  (Q92ZL2), NIFE_RHISN  (P55673), 
NIFE_RHOCA  (P19055), NIFK_ACIFR  (P15052), NIFK_AZOBR  (P25314), 
NIFK_AZOVI  (P07329), NIFK_BRADU  (P20621), NIFK_BRASP  (P06122), 
NIFK_CLOPA  (P11347), NIFK_CYAA5  (O07643), NIFK_CYAP8  (Q55030), 
NIFK_FRAAL  (Q57118), NIFK_HERSE  (P77875), NIFK_KLEPN  (P09772), 
NIFK_METBA  (P51754), NIFK_METMI  (P0CW52), NIFK_METMP  (P0CW53), 
NIFK_METTH  (O27606), NIFK_METTM  (P95296), NIFK_RHISN  (P19067), 
NIFN_AZOVI  (P10336), NIFN_BRADU  (P26507), NIFN_CYAP8  (O07356), 
NIFN_HERSE  (O87627), NIFN_KLEPN  (P08738), NIFN_NOSS1  (Q44145), 
NIFN_RHILO  (Q98AP3), NIFN_RHIME  (P12781), NIFN_RHISN  (P55674), 
NIFN_RHOCA  (P19077), VNFD_AZOCH  (P15332), VNFD_AZOPA  (O68953), 
VNFD_AZOSA  (O68954), VNFD_AZOVI  (P16855), VNFK_ANAVT  (Q57302), 
VNFK_AZOCH  (P15334), VNFK_AZOPA  (O68949), VNFK_AZOSA  (O68952), 
VNFK_AZOVI  (P16856)
» More

UniProtKB/Swiss-Prot
False negative sequences
6 sequences

NIFD_METMI  (P0CW50), NIFD_METMP  (P0CW51), NIFD_METTH  (O27605), 
NIFD_METTM  (Q50788), NIFK_METTL  (P20622), NIFK_NOSS1  (P00468)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

NIFD_ANASL  (P33177), NIFD_METIV  (P51605)

		
UniProtKB/Swiss-Prot
'Unknown' sequences
1 sequence

Y584_MYCTU  (O86365)

		
UniProtKB/Swiss-Prot
False positive sequences
7 sequences

CETP_CHICK  (Q3V6R6), MDGA1_CHICK (Q0WYX8), MDGA1_HUMAN (Q8NFP4), 
MDGA1_MOUSE (Q0PMG2), MDGA1_RAT   (P85171), NAGA_VIBFU  (P96166), 
Y025_OSHVF  (Q6R7J8)
» More

PDB
[Detailed view]
21 PDB

1FP4; 1G20; 1G21; 1H1L; 1L5H; 1M1N; 1M1Y; 1M34; 1MIO; 1N2C; 1QGU; 1QH1; 1QH8; 2AFH; 2AFI; 2AFK; 2MIN; 3K1A; 3MIN; 3U7Q; 4ND8
» More

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