Entry: PS00715

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General information about the entry

Entry name [info] SIGMA70_1
Accession [info] PS00715
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); NOV-1997 (DATA UPDATE); JUL-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00592

Name and characterization of the entry

Description [info] Sigma-70 factors family signature 1.
Pattern [info]
[DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_08 which contains 546'238 sequence entries.


Total number of hits 150 in 150 different sequences
Number of true positive hits 149 in 149 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 8
Number of 'partial' sequences 0
Precision (true positives / (true positives + false positives)) 99.33 %
Recall (true positives / (true positives + false negatives)) 94.90 %

Comments [info]

Taxonomic range [info] Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
149 sequences

FLIA_ECO57  (P0AEM8), FLIA_ECOL6  (P0AEM7), FLIA_ECOLI  (P0AEM6), 
FLIA_PSEAE  (P29248), FLIA_SALTI  (P0A2E9), FLIA_SALTY  (P0A2E8), 
FLIA_YEREN  (P52621), HRDA_STRCO  (P18182), HRDC_STRCO  (P18184), 
HRDD_STRCO  (P18249), HRDD_STRGR  (Q59914), HRDD_STRVF  (Q60012), 
RP28_BACAN  (P62182), RP28_BACCR  (P62180), RP28_BACTK  (P62181), 
RP35_BACAN  (P62177), RP35_BACCR  (P62178), RP35_BACTK  (P62179), 
RPOD_AGRT5  (P33452), RPOD_BORBU  (P52323), RPOD_BUCAI  (P57163), 
RPOD_BUCAP  (P32001), RPOD_BUCBP  (Q89B10), RPOD_CAUCR  (P52324), 
RPOD_COXBU  (Q83BB6), RPOD_ECOLI  (P00579), RPOD_HAEIN  (P43766), 
RPOD_HELPJ  (Q9ZMY3), RPOD_HELPY  (P55993), RPOD_LEPIC  (P61540), 
RPOD_LEPIN  (P59117), RPOD_MYXXA  (P17531), RPOD_NEIGO  (P52325), 
RPOD_PSEAE  (P26480), RPOD_PSEPH  (P52326), RPOD_PSEPU  (P52327), 
RPOD_RHIEC  (Q2K619), RPOD_RHIME  (Q59753), RPOD_RHOCA  (P0CZ15), 
RPOD_RHOCB  (D5AQI9), RPOD_RICBR  (Q1RKH7), RPOD_RICCN  (Q92FZ8), 
RPOD_RICFE  (Q4UJT1), RPOD_RICPR  (P33451), RPOD_RICTY  (Q68VQ5), 
RPOD_SALTI  (P0A2E4), RPOD_SALTY  (P0A2E3), RPOD_SERMA  (P43344), 
RPOD_SHEVD  (O24744), RPOD_TREPA  (O83506), RPOD_XANAC  (Q8PG33), 
RPOD_XANCP  (Q8P4H2), RPOD_XYLFA  (Q9PDM9), RPOD_XYLFT  (Q87DT7), 
RPOF_STRAU  (P37970), RPOF_STRCO  (P37971), RPOH_BUCAI  (O05385), 
RPOH_BUCAP  (Q8KA76), RPOH_BUCBP  (Q89B27), RPOH_CAUCN  (B8H3C3), 
RPOH_CAUCR  (P0CAW9), RPOH_CITFR  (P11539), RPOH_ECO57  (P0AGB5), 
RPOH_ECOL6  (P0AGB4), RPOH_ECOLI  (P0AGB3), RPOH_ENTCL  (P50508), 
RPOH_HAEIN  (P44404), RPOH_PROMI  (P50509), RPOH_PSEAE  (P42378), 
RPOH_RHIRD  (P50507), RPOH_SERMA  (P50510), RPOH_VIBCH  (P50511), 
RPOH_VIBVU  (Q8DD54), RPOH_ZYMMO  (P50512), RPOS_COXBU  (Q9KI19), 
RPOS_ECOLI  (P13445), RPOS_PSEAE  (P45684), RPOS_SALDU  (P0A2E7), 
RPOS_SALT1  (D0ZVL4), RPOS_SALTI  (P0A2E6), RPOS_SALTU  (F5ZTT9), 
RPOS_SALTY  (P0DM81), RPOS_SHIFL  (P35540), RPOS_VIBCH  (O51804), 
RPOS_YEREN  (P47765), RPSB_BACAN  (Q9K5J6), RPSB_CORDI  (P33118), 
RPSB_MYXXA  (P19433), RPSB_NOSS1  (Q03065), RPSB_STIAD  (Q01624), 
RPSC_NOSS1  (Q03066), RPSC_SYNY3  (Q59996), RPSD_BACSU  (P10726), 
RPSE_BACSU  (P06222), RPSE_CLOAB  (P33657), RPSF_BACLI  (P26764), 
RPSF_BACME  (P35145), RPSF_BACSU  (P07860), RPSG_BACSU  (P19940), 
RPSG_CLOAB  (P33658), RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), 
RPSK_BACSU  (P12254), RPSW_STRCO  (P17211), RPSX_BACTK  (P26768), 
SIGA1_SYNE7 (P38023), SIGA2_SYNE7 (Q31ME3), SIGA4_SYNE7 (Q31QR8), 
SIGA_ARATH  (O24629), SIGA_BACHD  (O66381), SIGA_BACSP  (P52328), 
SIGA_BACSU  (P06224), SIGA_CHLMU  (P56835), SIGA_CHLPN  (Q9Z7F0), 
SIGA_CHLTR  (P18333), SIGA_CLOAB  (P33656), SIGA_ENTFA  (P52329), 
SIGA_LACLA  (Q04506), SIGA_LACLC  (P58290), SIGA_LISIN  (Q92BQ6), 
SIGA_LISMO  (P52331), SIGA_MICAE  (P52322), SIGA_MYCBO  (P0A603), 
SIGA_MYCGE  (P47491), SIGA_MYCPN  (P78022), SIGA_MYCTO  (P9WGI0), 
SIGA_MYCTU  (P9WGI1), SIGA_NOSS1  (P26683), SIGA_STAA8  (P0A0J0), 
SIGA_STAAC  (Q5HFJ9), SIGA_STAAM  (P0A0I8), SIGA_STAAN  (Q99TT5), 
SIGA_STAAR  (Q6GGD8), SIGA_STAAS  (Q6G905), SIGA_STAAW  (P0A0I9), 
SIGA_STAEQ  (Q5HNY7), SIGA_STAES  (Q8CP24), SIGA_STRAU  (P27785), 
SIGA_STRCO  (P18183), SIGA_STRGR  (P77951), SIGA_STRMU  (O33662), 
SIGA_STRPN  (P0A4I9), SIGA_STRR6  (P0A4J0), SIGA_SYNY3  (P74565), 
SIGA_THEMA  (P77994), SIGB_MYCTO  (P9WGI4), SIGB_MYCTU  (P9WGI5), 
SIGD_ARATH  (Q9ZSL6), SIGF_ARATH  (Q9LD95)
» More

UniProtKB/Swiss-Prot
False negative sequences
8 sequences

LAFS_VIBPA  (Q03474), RPSB_BACSU  (P06574), RPSC_MYXXA  (Q07083), 
SIGA3_SYNE7 (Q31QG5), SIGA_THEAQ  (Q9EZJ8), SIGA_THET2  (Q72L95), 
SIGI_BACSU  (O31654), SIGO_BACSU  (O34843)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

HLDE_STRCO  (Q9Z5B5)

		
PDB
[Detailed view]
15 PDB

1SIG; 3IYD; 4IGC; 4JK1; 4JK2; 4JKR; 4KMU; 4KN4; 4KN7; 4LJZ; 4LK0; 4LK1; 4LLG; 4MEX; 4MEY
» More

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