Entry: PS00715

General information about the entry
Entry name SIGMA70_1
Accession number PS00715
Entry type PATTERN
Date DEC-1992 (CREATED); NOV-1997 (DATA UPDATE); MAR-2013 (INFO UPDATE).
PROSITE Documentation PDOC00592
Name and characterization of the entry
DescriptionSigma-70 factors family signature 1.
Pattern [DE]-[LIVMF](2)-[HEQS]-x-G-x-[LIVMFA]-G-L-[LIVMFYE]-x-[GSAM]-[LIVMAP].
Numerical results
  • UniProtKB/Swiss-Prot release number: 2013_05, total number of sequence entries in that release: 540052.
  • Total number of hits in UniProtKB/Swiss-Prot: 145 hits in 145 different sequences
  • Number of hits on proteins that are known to belong to the set under consideration: 144 hits in 144 different sequences
  • Number of hits on proteins that could potentially belong to the set under consideration: 0 hits in 0 different sequences
  • Number of false hits (on unrelated proteins): 1 hits in 1 different sequences
  • Number of known missed hits: 6
  • Number of partial sequences which belong to the set under consideration, but which are not hit by the pattern or profile because they are partial (fragment) sequences: 0
  • Precision (true hits / (true hits + false positives)): 99.31 %
  • Recall (true hits / (true hits + false negatives)): 96.00 %
Comments
  • Taxonomic range: Eukaryotes, Prokaryotes (Bacteria)
  • Maximum known number of repetitions of the pattern in a single protein: 1
  • VERSION: 1
Cross-references
UniProtKB/Swiss-Prot True positive hits:
FLIA_ECO57  (P0AEM8), FLIA_ECOL6  (P0AEM7), FLIA_ECOLI  (P0AEM6), 
FLIA_PSEAE  (P29248), FLIA_SALTI  (P0A2E9), FLIA_SALTY  (P0A2E8), 
FLIA_YEREN  (P52621), HRDA_STRCO  (P18182), HRDB_STRCO  (P18183), 
HRDB_STRGR  (P77951), HRDC_STRCO  (P18184), HRDD_STRCO  (P18249), 
HRDD_STRGR  (Q59914), HRDD_STRVF  (Q60012), RP28_BACAN  (P62182), 
RP28_BACCR  (P62180), RP28_BACTK  (P62181), RP32_BUCAI  (O05385), 
RP32_BUCAP  (Q8KA76), RP32_BUCBP  (Q89B27), RP32_CAUCN  (B8H3C3), 
RP32_CAUCR  (P0CAW9), RP32_CITFR  (P11539), RP32_ECO57  (P0AGB5), 
RP32_ECOL6  (P0AGB4), RP32_ECOLI  (P0AGB3), RP32_ENTCL  (P50508), 
RP32_HAEIN  (P44404), RP32_PROMI  (P50509), RP32_PSEAE  (P42378), 
RP32_RHIRD  (P50507), RP32_SERMA  (P50510), RP32_VIBCH  (P50511), 
RP32_VIBVU  (Q8DD54), RP32_ZYMMO  (P50512), RP35_BACAN  (P62177), 
RP35_BACCR  (P62178), RP35_BACTK  (P62179), RPOD1_SYNE7 (P38023), 
RPOD2_SYNE7 (Q31ME3), RPOD4_SYNE7 (Q31QR8), RPOD_AGRT5  (P33452), 
RPOD_BACHD  (O66381), RPOD_BACSU  (P06224), RPOD_BORBU  (P52323), 
RPOD_BUCAI  (P57163), RPOD_BUCAP  (P32001), RPOD_BUCBP  (Q89B10), 
RPOD_CAUCR  (P52324), RPOD_CHLMU  (P56835), RPOD_CHLPN  (Q9Z7F0), 
RPOD_CHLTR  (P18333), RPOD_CLOAB  (P33656), RPOD_COXBU  (Q83BB6), 
RPOD_ECOLI  (P00579), RPOD_ENTFA  (P52329), RPOD_HAEIN  (P43766), 
RPOD_HELPJ  (Q9ZMY3), RPOD_HELPY  (P55993), RPOD_LACLA  (Q04506), 
RPOD_LACLC  (P58290), RPOD_LEPIC  (P61540), RPOD_LEPIN  (P59117), 
RPOD_LISIN  (Q92BQ6), RPOD_LISMO  (P52331), RPOD_MICAE  (P52322), 
RPOD_MYCBO  (P0A603), RPOD_MYCGE  (P47491), RPOD_MYCPN  (P78022), 
RPOD_MYCTU  (P0A602), RPOD_MYXXA  (P17531), RPOD_NEIGO  (P52325), 
RPOD_NOSS1  (P26683), RPOD_PSEAE  (P26480), RPOD_PSEFL  (P52326), 
RPOD_PSEPU  (P52327), RPOD_RHIEC  (Q2K619), RPOD_RHIME  (Q59753), 
RPOD_RHOCA  (P0CZ15), RPOD_RHOCB  (D5AQI9), RPOD_RICBR  (Q1RKH7), 
RPOD_RICCN  (Q92FZ8), RPOD_RICFE  (Q4UJT1), RPOD_RICPR  (P33451), 
RPOD_RICTY  (Q68VQ5), RPOD_SALTI  (P0A2E4), RPOD_SALTY  (P0A2E3), 
RPOD_SERMA  (P43344), RPOD_SHEVD  (O24744), RPOD_STAA8  (P0A0J0), 
RPOD_STAAC  (Q5HFJ9), RPOD_STAAM  (P0A0I8), RPOD_STAAN  (Q99TT5), 
RPOD_STAAR  (Q6GGD8), RPOD_STAAS  (Q6G905), RPOD_STAAW  (P0A0I9), 
RPOD_STAEQ  (Q5HNY7), RPOD_STAES  (Q8CP24), RPOD_STRAU  (P27785), 
RPOD_STRMU  (O33662), RPOD_STRPN  (P0A4I9), RPOD_STRR6  (P0A4J0), 
RPOD_SYNY3  (P74565), RPOD_THEMA  (P77994), RPOD_TREPA  (O83506), 
RPOD_XANAC  (Q8PG33), RPOD_XANCP  (Q8P4H2), RPOD_XYLFA  (Q9PDM9), 
RPOD_XYLFT  (Q87DT7), RPOF_STRAU  (P37970), RPOF_STRCO  (P37971), 
RPOS_COXBU  (Q9KI19), RPOS_ECOLI  (P13445), RPOS_PSEAE  (P45684), 
RPOS_SALDU  (P0A2E7), RPOS_SALTI  (P0A2E6), RPOS_SALTY  (P0A2E5), 
RPOS_SHIFL  (P35540), RPOS_VIBCH  (O51804), RPOS_YEREN  (P47765), 
RPSB_BACAN  (Q9K5J6), RPSB_CORDI  (P33118), RPSB_MYXXA  (P19433), 
RPSB_NOSS1  (Q03065), RPSB_STIAD  (Q01624), RPSC_NOSS1  (Q03066), 
RPSC_SYNY3  (Q59996), RPSD2_BACSP (P52328), RPSD_BACSU  (P10726), 
RPSE_BACSU  (P06222), RPSE_CLOAB  (P33657), RPSF_BACLI  (P26764), 
RPSF_BACME  (P35145), RPSF_BACSU  (P07860), RPSG_BACSU  (P19940), 
RPSG_CLOAB  (P33658), RPSH_BACLI  (P02964), RPSH_BACSU  (P17869), 
RPSK_BACSU  (P12254), RPSW_STRCO  (P17211), RPSX_BACTK  (P26768), 
SIGA_ARATH  (O24629), SIGD_ARATH  (Q9ZSL6), SIGF_ARATH  (Q9LD95)
False negative hits (sequences which belong to the set under consideration, but which have not been picked up by the pattern or profile):
LAFS_VIBPA  (Q03474), RPOD3_SYNE7 (Q31QG5), RPSB_BACSU  (P06574), 
RPSC_MYXXA  (Q07083), SIGI_BACSU  (O31654), SIGO_BACSU  (O34843)
False positive hits (sequences which do not belong to the set under consideration):
HLDE_STRCO  (Q9Z5B5)
Retrieve an alignment of UniProtKB/Swiss-Prot true positive hits:

[Clustal format, color, condensed view] [Clustal format, color] [Clustal format, plain text] [Fasta format]

Retrieve the sequence logo from the alignment

PDB
[Detailed view]		 1SIG; 3IYD; 4IGC;

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