Entry: PS00725

General information about the entry

Entry name [info] GERMIN
Accession [info] PS00725
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2015 (INFO UPDATE).
PROSITE Doc. [info] PDOC00597

Name and characterization of the entry

Description [info] Germin family signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2015_05 which contains 548'454 sequence entries.

Total number of hits 79 in 79 different sequences
Number of true positive hits 78 in 78 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 12
Number of 'partial' sequences 10
Precision (true positives / (true positives + false positives)) 98.73 %
Recall (true positives / (true positives + false negatives)) 86.67 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] manganese at position 3
Site [info] manganese at position 5
Site [info] manganese at position 10
Version [info] 1

Cross-references [info]

True positive sequences
78 sequences

AB19A_PRUPE (Q9ZRA4), AB19B_PRUPE (O04012), ABP20_PRUPE (O04011), 
GER2_WHEAT  (P15290), GER3_WHEAT  (P26759), GL110_ARATH (Q9FMA9), 
GL111_ARATH (Q9FMA8), GL111_ORYSJ (Q2R352), GL112_ARATH (Q9FMA6), 
GL113_ARATH (P92997), GL114_ARATH (Q9FID0), GL115_ARATH (Q9FIC9), 
GL116_ARATH (Q9FIC8), GL117_ARATH (Q9FIC6), GL118_ARATH (P92999), 
GL119_ARATH (Q9FL89), GL11_ARATH  (P92998), GL11_ORYSJ  (Q7F731), 
GL120_ARATH (P92996), GL121_ORYSJ (Q2QXJ4), GL122_ORYSJ (Q2QXJ2), 
GL123_ORYSJ (Q2QXJ1), GL124_ORYSJ (Q2QXJ0), GL12_ORYSJ  (Q94JF3), 
GL13_ARATH  (Q9M8X3), GL13_ORYSJ  (Q942A8), GL14_ORYSJ  (Q942A7), 
GL15_ARATH  (Q9M8X5), GL16_ARATH  (Q9M8X6), GL17_ARATH  (Q9SFF9), 
GL18_ARATH  (Q9LEA7), GL19_ARATH  (Q9FMB0), GL21_ARATH  (P94014), 
GL21_ORYSJ  (Q6K5Q0), GL22_ARATH  (Q9FZ27), GL22_ORYSJ  (Q6K5P9), 
GL23_ORYSJ  (Q6K5P8), GL24_ARATH  (Q9M263), GL25_ARATH  (O65252), 
GL31_ARATH  (P94040), GL32_ORYSJ  (Q7XZY1), GL33_ARATH  (P94072), 
GL33_ORYSJ  (Q851J8), GL34_ARATH  (Q9FLT3), GL34_ORYSJ  (Q851J9), 
GL35_ORYSJ  (Q851K0), GL36_ORYSJ  (Q851K1), GL37_ORYSJ  (Q10BU2), 
GL38_ORYSJ  (Q75HJ4), GL41_ORYSJ  (Q7XSN6), GL52_ORYSJ  (Q6I544), 
GL810_ORYSJ (Q6YZ97), GL811_ORYSJ (Q6YZY5), GL812_ORYSJ (Q6ZCR3), 
GL813_ORYSJ (Q6Z964), GL814_ORYSJ (Q6ZBZ2), GL81_ORYSJ  (Q6YZB2), 
GL82_ORYSJ  (Q6YZA9), GL83_ORYSJ  (Q6YZZ7), GL84_ORYSJ  (Q6YZZ6), 
GL85_ORYSJ  (Q6YZA6), GL86_ORYSJ  (Q6YZA4), GL87_ORYSJ  (Q6YZZ2), 
GL88_ORYSJ  (Q6YZA1), GL89_ORYSJ  (Q6YZ99), GLP1_BRANA  (P46271), 
GLP1_IPONI  (P45853), GLP1_MESCR  (P45852), GLP1_MORAL  (L8BRS3), 
GLP1_SINAL  (P45854), GLT1_ARATH  (P92995), NEC1_NICLS  (Q94EG3), 
NEC1_NICPL  (Q9SPV5), OXO1_HORVU  (P45850), OXO2_HORVU  (P45851), 
RHRE_PEA    (Q9S8P4), SR1A_PHYPO  (P09350), SR1B_PHYPO  (P09351)
» More

False negative sequences
12 sequences

GL12_ARATH  (Q9M8X1), GL14_ARATH  (Q9M8X4), GL23_ARATH  (P93000), 
GL24_ORYSJ  (Q6ESF0), GL31_ORYSJ  (Q8H021), GL32_ARATH  (Q9SR72), 
GL51_ORYSJ  (Q688L5), GL91_ORYSJ  (Q652Q1), GL92_ORYSJ  (Q652Q0), 
GL93_ORYSJ  (Q652P9), GLT2_ARATH  (Q9LMC9), GLT3_ARATH  (Q9S772)
» More

'Partial' sequences
10 sequences

ABP_POPEU   (P84979), GER1_HORVU  (P28525), GER2_HORVU  (P28526), 
GERP_WHEAT  (P29532), GLP1_BETPN  (P85336), GLP1_CITSI  (P84159), 
GLP1_POPEU  (P84978), GLP2_BETPN  (P85352), GLP3_BETPN  (P85353), 
GLP4_BETPN  (P85354)
» More

False positive sequences
1 sequence

YDBB_BACSU  (P96597)

[Detailed view]

1FI2; 2ET1; 2ET7; 2ETE

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