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Entry: PS00725

General information about the entry

Entry name [info] GERMIN
Accession [info] PS00725
Entry type [info] PATTERN
Date [info] 01-DEC-1992 CREATED; 01-DEC-2001 DATA UPDATE; 20-DEC-2017 INFO UPDATE.
PROSITE Doc. [info] PDOC00597

Name and characterization of the entry

Description [info] Germin family signature.
Pattern [info]
G-x(4)-H-x-H-P-x-[AGS]-x-E-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2017_12 which contains 556'388 sequence entries.


Total number of hits 79 in 79 different sequences
Number of true positive hits 78 in 78 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 12
Number of 'partial' sequences 11
Precision (true positives / (true positives + false positives)) 98.73 %
Recall (true positives / (true positives + false negatives)) 86.67 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] manganese at position 3
Site [info] manganese at position 5
Site [info] manganese at position 10
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
78 sequences

AB19A_PRUPE (Q9ZRA4    ), AB19B_PRUPE (O04012    ), ABP20_PRUPE (O04011    ), 
GER2_WHEAT  (P15290    ), GER3_WHEAT  (P26759    ), GL110_ARATH (Q9FMA9    ), 
GL111_ARATH (Q9FMA8    ), GL111_ORYSJ (Q2R352    ), GL112_ARATH (Q9FMA6    ), 
GL113_ARATH (P92997    ), GL114_ARATH (Q9FID0    ), GL115_ARATH (Q9FIC9    ), 
GL116_ARATH (Q9FIC8    ), GL117_ARATH (Q9FIC6    ), GL118_ARATH (P92999    ), 
GL119_ARATH (Q9FL89    ), GL11_ARATH  (P92998    ), GL11_ORYSJ  (Q7F731    ), 
GL120_ARATH (P92996    ), GL121_ORYSJ (Q2QXJ4    ), GL122_ORYSJ (Q2QXJ2    ), 
GL123_ORYSJ (Q2QXJ1    ), GL124_ORYSJ (Q2QXJ0    ), GL12_ORYSJ  (Q94JF3    ), 
GL13_ARATH  (Q9M8X3    ), GL13_ORYSJ  (Q942A8    ), GL14_ORYSJ  (Q942A7    ), 
GL15_ARATH  (Q9M8X5    ), GL16_ARATH  (Q9M8X6    ), GL17_ARATH  (Q9SFF9    ), 
GL18_ARATH  (Q9LEA7    ), GL19_ARATH  (Q9FMB0    ), GL21_ARATH  (P94014    ), 
GL21_ORYSJ  (Q6K5Q0    ), GL22_ARATH  (Q9FZ27    ), GL22_ORYSJ  (Q6K5P9    ), 
GL23_ORYSJ  (Q6K5P8    ), GL24_ARATH  (Q9M263    ), GL25_ARATH  (O65252    ), 
GL31_ARATH  (P94040    ), GL32_ORYSJ  (Q7XZY1    ), GL33_ARATH  (P94072    ), 
GL33_ORYSJ  (Q851J8    ), GL34_ARATH  (Q9FLT3    ), GL34_ORYSJ  (Q851J9    ), 
GL35_ORYSJ  (Q851K0    ), GL36_ORYSJ  (Q851K1    ), GL37_ORYSJ  (Q10BU2    ), 
GL38_ORYSJ  (Q75HJ4    ), GL41_ORYSJ  (Q7XSN6    ), GL52_ORYSJ  (Q6I544    ), 
GL810_ORYSJ (Q6YZ97    ), GL811_ORYSJ (Q6YZY5    ), GL812_ORYSJ (Q6ZCR3    ), 
GL813_ORYSJ (Q6Z964    ), GL814_ORYSJ (Q6ZBZ2    ), GL81_ORYSJ  (Q6YZB2    ), 
GL82_ORYSJ  (Q6YZA9    ), GL83_ORYSJ  (Q6YZZ7    ), GL84_ORYSJ  (Q6YZZ6    ), 
GL85_ORYSJ  (Q6YZA6    ), GL86_ORYSJ  (Q6YZA4    ), GL87_ORYSJ  (Q6YZZ2    ), 
GL88_ORYSJ  (Q6YZA1    ), GL89_ORYSJ  (Q6YZ99    ), GLP1_BRANA  (P46271    ), 
GLP1_IPONI  (P45853    ), GLP1_MESCR  (P45852    ), GLP1_MORAL  (L8BRS3    ), 
GLP1_SINAL  (P45854    ), GLT1_ARATH  (P92995    ), NEC1_NICLS  (Q94EG3    ), 
NEC1_NICPL  (Q9SPV5    ), OXO1_HORVU  (P45850    ), OXO2_HORVU  (P45851    ), 
RHRE_PEA    (Q9S8P4    ), SR1A_PHYPO  (P09350    ), SR1B_PHYPO  (P09351    )
» more

UniProtKB/Swiss-Prot
False negative sequences
12 sequences

GL12_ARATH  (Q9M8X1    ), GL14_ARATH  (Q9M8X4    ), GL23_ARATH  (P93000    ), 
GL24_ORYSJ  (Q6ESF0    ), GL31_ORYSJ  (Q8H021    ), GL32_ARATH  (Q9SR72    ), 
GL51_ORYSJ  (Q688L5    ), GL91_ORYSJ  (Q652Q1    ), GL92_ORYSJ  (Q652Q0    ), 
GL93_ORYSJ  (Q652P9    ), GLT2_ARATH  (Q9LMC9    ), GLT3_ARATH  (Q9S772    )
» more

UniProtKB/Swiss-Prot
'Partial' sequences
11 sequences

ABP_POPEU   (P84979    ), GER1_HORVU  (P28525    ), GER2_HORVU  (P28526    ), 
GERP_WHEAT  (P29532    ), GLP1_BETPN  (P85336    ), GLP1_CITSI  (P84159    ), 
GLP1_POPEU  (P84978    ), GLP2_BETPN  (P85352    ), GLP3_BETPN  (P85353    ), 
GLP4_BETPN  (P85354    ), PRVN_THEPV  (C0HJY2    )
» more

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

YDBB_BACSU  (P96597    )

		
PDB
[Detailed view]
4 PDB

1FI2; 2ET1; 2ET7; 2ETE

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