Entry: PS00725

General information about the entry

Entry name [info] GERMIN
Accession [info] PS00725
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2016 (INFO UPDATE).
PROSITE Doc. [info] PDOC00597

Name and characterization of the entry

Description [info] Germin family signature.
Pattern [info]

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2016_04 which contains 550'960 sequence entries.

Total number of hits 79 in 79 different sequences
Number of true positive hits 78 in 78 different sequences
Number of 'unknown' hits 0
Number of false positive hits 1
Number of false negative sequences 12
Number of 'partial' sequences 11
Precision (true positives / (true positives + false positives)) 98.73 %
Recall (true positives / (true positives + false negatives)) 86.67 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] manganese at position 3
Site [info] manganese at position 5
Site [info] manganese at position 10
Version [info] 1

Cross-references [info]

True positive sequences
78 sequences

AB19A_PRUPE (Q9ZRA4), AB19B_PRUPE (O04012), ABP20_PRUPE (O04011), 
GER2_WHEAT  (P15290), GER3_WHEAT  (P26759), GL110_ARATH (Q9FMA9), 
GL111_ARATH (Q9FMA8), GL111_ORYSJ (Q2R352), GL112_ARATH (Q9FMA6), 
GL113_ARATH (P92997), GL114_ARATH (Q9FID0), GL115_ARATH (Q9FIC9), 
GL116_ARATH (Q9FIC8), GL117_ARATH (Q9FIC6), GL118_ARATH (P92999), 
GL119_ARATH (Q9FL89), GL11_ARATH  (P92998), GL11_ORYSJ  (Q7F731), 
GL120_ARATH (P92996), GL121_ORYSJ (Q2QXJ4), GL122_ORYSJ (Q2QXJ2), 
GL123_ORYSJ (Q2QXJ1), GL124_ORYSJ (Q2QXJ0), GL12_ORYSJ  (Q94JF3), 
GL13_ARATH  (Q9M8X3), GL13_ORYSJ  (Q942A8), GL14_ORYSJ  (Q942A7), 
GL15_ARATH  (Q9M8X5), GL16_ARATH  (Q9M8X6), GL17_ARATH  (Q9SFF9), 
GL18_ARATH  (Q9LEA7), GL19_ARATH  (Q9FMB0), GL21_ARATH  (P94014), 
GL21_ORYSJ  (Q6K5Q0), GL22_ARATH  (Q9FZ27), GL22_ORYSJ  (Q6K5P9), 
GL23_ORYSJ  (Q6K5P8), GL24_ARATH  (Q9M263), GL25_ARATH  (O65252), 
GL31_ARATH  (P94040), GL32_ORYSJ  (Q7XZY1), GL33_ARATH  (P94072), 
GL33_ORYSJ  (Q851J8), GL34_ARATH  (Q9FLT3), GL34_ORYSJ  (Q851J9), 
GL35_ORYSJ  (Q851K0), GL36_ORYSJ  (Q851K1), GL37_ORYSJ  (Q10BU2), 
GL38_ORYSJ  (Q75HJ4), GL41_ORYSJ  (Q7XSN6), GL52_ORYSJ  (Q6I544), 
GL810_ORYSJ (Q6YZ97), GL811_ORYSJ (Q6YZY5), GL812_ORYSJ (Q6ZCR3), 
GL813_ORYSJ (Q6Z964), GL814_ORYSJ (Q6ZBZ2), GL81_ORYSJ  (Q6YZB2), 
GL82_ORYSJ  (Q6YZA9), GL83_ORYSJ  (Q6YZZ7), GL84_ORYSJ  (Q6YZZ6), 
GL85_ORYSJ  (Q6YZA6), GL86_ORYSJ  (Q6YZA4), GL87_ORYSJ  (Q6YZZ2), 
GL88_ORYSJ  (Q6YZA1), GL89_ORYSJ  (Q6YZ99), GLP1_BRANA  (P46271), 
GLP1_IPONI  (P45853), GLP1_MESCR  (P45852), GLP1_MORAL  (L8BRS3), 
GLP1_SINAL  (P45854), GLT1_ARATH  (P92995), NEC1_NICLS  (Q94EG3), 
NEC1_NICPL  (Q9SPV5), OXO1_HORVU  (P45850), OXO2_HORVU  (P45851), 
RHRE_PEA    (Q9S8P4), SR1A_PHYPO  (P09350), SR1B_PHYPO  (P09351)
» more

False negative sequences
12 sequences

GL12_ARATH  (Q9M8X1), GL14_ARATH  (Q9M8X4), GL23_ARATH  (P93000), 
GL24_ORYSJ  (Q6ESF0), GL31_ORYSJ  (Q8H021), GL32_ARATH  (Q9SR72), 
GL51_ORYSJ  (Q688L5), GL91_ORYSJ  (Q652Q1), GL92_ORYSJ  (Q652Q0), 
GL93_ORYSJ  (Q652P9), GLT2_ARATH  (Q9LMC9), GLT3_ARATH  (Q9S772)
» more

'Partial' sequences
11 sequences

ABP_POPEU   (P84979), GER1_HORVU  (P28525), GER2_HORVU  (P28526), 
GERP_WHEAT  (P29532), GLP1_BETPN  (P85336), GLP1_CITSI  (P84159), 
GLP1_POPEU  (P84978), GLP2_BETPN  (P85352), GLP3_BETPN  (P85353), 
» more

False positive sequences
1 sequence

YDBB_BACSU  (P96597)

[Detailed view]

1FI2; 2ET1; 2ET7; 2ETE

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