Entry: PS00725

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General information about the entry

Entry name [info] GERMIN
Accession [info] PS00725
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2001 (DATA UPDATE); MAR-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00597

Name and characterization of the entry

Description [info] Germin family signature.
Pattern [info]
G-x(4)-H-x-H-P-x-[AGS]-x-E-[LIVM].

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_04 which contains 544'996 sequence entries.


Total number of hits 79 in 79 different sequences
Number of true positive hits 78 in 78 different sequences
Number of 'unknown' hits
Number of false positive hits 1
Number of false negative sequences 12
Number of 'partial' sequences 10
Precision (true positives / (true positives + false positives)) 98.73 %
Recall (true positives / (true positives + false negatives)) 86.67 %

Comments [info]

Taxonomic range [info] Eukaryotes
Maximum number of repetitions [info] 1
Site [info] manganese at position 3
Site [info] manganese at position 5
Site [info] manganese at position 10
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
78 sequences

AB19A_PRUPE (Q9ZRA4), AB19B_PRUPE (O04012), ABP20_PRUPE (O04011), 
GER2_WHEAT  (P15290), GER3_WHEAT  (P26759), GL110_ARATH (Q9FMA9), 
GL111_ARATH (Q9FMA8), GL111_ORYSJ (Q2R352), GL112_ARATH (Q9FMA6), 
GL113_ARATH (P92997), GL114_ARATH (Q9FID0), GL115_ARATH (Q9FIC9), 
GL116_ARATH (Q9FIC8), GL117_ARATH (Q9FIC6), GL118_ARATH (P92999), 
GL119_ARATH (Q9FL89), GL11_ARATH  (P92998), GL11_ORYSJ  (Q7F731), 
GL120_ARATH (P92996), GL121_ORYSJ (Q2QXJ4), GL122_ORYSJ (Q2QXJ2), 
GL123_ORYSJ (Q2QXJ1), GL124_ORYSJ (Q2QXJ0), GL12_ORYSJ  (Q94JF3), 
GL13_ARATH  (Q9M8X3), GL13_ORYSJ  (Q942A8), GL14_ORYSJ  (Q942A7), 
GL15_ARATH  (Q9M8X5), GL16_ARATH  (Q9M8X6), GL17_ARATH  (Q9SFF9), 
GL18_ARATH  (Q9LEA7), GL19_ARATH  (Q9FMB0), GL21_ARATH  (P94014), 
GL21_ORYSJ  (Q6K5Q0), GL22_ARATH  (Q9FZ27), GL22_ORYSJ  (Q6K5P9), 
GL23_ORYSJ  (Q6K5P8), GL24_ARATH  (Q9M263), GL25_ARATH  (O65252), 
GL31_ARATH  (P94040), GL32_ORYSJ  (Q7XZY1), GL33_ARATH  (P94072), 
GL33_ORYSJ  (Q851J8), GL34_ARATH  (Q9FLT3), GL34_ORYSJ  (Q851J9), 
GL35_ORYSJ  (Q851K0), GL36_ORYSJ  (Q851K1), GL37_ORYSJ  (Q10BU2), 
GL38_ORYSJ  (Q75HJ4), GL41_ORYSJ  (Q7XSN6), GL52_ORYSJ  (Q6I544), 
GL810_ORYSJ (Q6YZ97), GL811_ORYSJ (Q6YZY5), GL812_ORYSJ (Q6ZCR3), 
GL813_ORYSJ (Q6Z964), GL814_ORYSJ (Q6ZBZ2), GL81_ORYSJ  (Q6YZB2), 
GL82_ORYSJ  (Q6YZA9), GL83_ORYSJ  (Q6YZZ7), GL84_ORYSJ  (Q6YZZ6), 
GL85_ORYSJ  (Q6YZA6), GL86_ORYSJ  (Q6YZA4), GL87_ORYSJ  (Q6YZZ2), 
GL88_ORYSJ  (Q6YZA1), GL89_ORYSJ  (Q6YZ99), GLP1_BRANA  (P46271), 
GLP1_IPONI  (P45853), GLP1_MESCR  (P45852), GLP1_MORAL  (L8BRS3), 
GLP1_SINAL  (P45854), GLT1_ARATH  (P92995), NEC1_NICLS  (Q94EG3), 
NEC1_NICPL  (Q9SPV5), OXO1_HORVU  (P45850), OXO2_HORVU  (P45851), 
RHRE_PEA    (Q9S8P4), SR1A_PHYPO  (P09350), SR1B_PHYPO  (P09351)
» More

UniProtKB/Swiss-Prot
False negative sequences
12 sequences

GL12_ARATH  (Q9M8X1), GL14_ARATH  (Q9M8X4), GL23_ARATH  (P93000), 
GL24_ORYSJ  (Q6ESF0), GL31_ORYSJ  (Q8H021), GL32_ARATH  (Q9SR72), 
GL51_ORYSJ  (Q688L5), GL91_ORYSJ  (Q652Q1), GL92_ORYSJ  (Q652Q0), 
GL93_ORYSJ  (Q652P9), GLT2_ARATH  (Q9LMC9), GLT3_ARATH  (Q9S772)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
10 sequences

ABP_POPEU   (P84979), GER1_HORVU  (P28525), GER2_HORVU  (P28526), 
GERP_WHEAT  (P29532), GLP1_BETPN  (P85336), GLP1_CITSI  (P84159), 
GLP1_POPEU  (P84978), GLP2_BETPN  (P85352), GLP3_BETPN  (P85353), 
GLP4_BETPN  (P85354)
» More

UniProtKB/Swiss-Prot
False positive sequences
1 sequence

YDBB_BACSU  (P96597)

		
PDB
[Detailed view]
4 PDB

1FI2; 2ET1; 2ET7; 2ETE

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