Entry: PS00755

Forthcoming changes to the profile format
General information about the entry

Entry name [info] SECY_1
Accession [info] PS00755
Entry type [info] PATTERN
Date [info] DEC-1992 (CREATED); DEC-2004 (DATA UPDATE); JUN-2014 (INFO UPDATE).
PROSITE Doc. [info] PDOC00612

Name and characterization of the entry

Description [info] Protein secY signature 1.
Pattern [info]
[GSTL]-[LIVMFK]-[LIVMFCA]-x-[LIVMF]-[GSAN]-[LIVM]-x-P-[LIVMFYN]-[LIVMFY]-
x-[AS]-[GSTQD]-[LIVMFAT](3)-[EQ]-[LIVMFA](2).

Numerical results [info]

Numerical results for UniProtKB/Swiss-Prot release 2014_07 which contains 546'000 sequence entries.


Total number of hits 124 in 124 different sequences
Number of true positive hits 124 in 124 different sequences
Number of 'unknown' hits
Number of false positive hits
Number of false negative sequences 5
Number of 'partial' sequences 2
Precision (true positives / (true positives + false positives)) 100.00 %
Recall (true positives / (true positives + false negatives)) 96.12 %

Comments [info]

Taxonomic range [info] Archaea, Eukaryotes, Prokaryotes (Bacteria)
Maximum number of repetitions [info] 1
Version [info] 1

Cross-references [info]

UniProtKB/Swiss-Prot
True positive sequences
124 sequences

S61A1_BOVIN (Q5EA68), S61A1_CANFA (P38377), S61A1_DANRE (Q90ZM2), 
S61A1_HUMAN (P61619), S61A1_MOUSE (P61620), S61A1_ONCMY (Q98SN9), 
S61A1_PONAB (Q5R5L5), S61A1_RAT   (P61621), S61A2_BOVIN (Q2KHX4), 
S61A2_DANRE (Q90YL4), S61A2_HUMAN (Q9H9S3), S61A2_MOUSE (Q9JLR1), 
S61A2_ONCMY (Q98SN8), S61A2_PONAB (Q5NVM7), SC61A_ASHGO (Q752H7), 
SC61A_BORSA (Q8AY33), SC61A_BOVVA (Q8AY31), SC61A_CANAL (Q9P8E3), 
SC61A_CANGA (Q6FRY3), SC61A_DEBHA (Q6BN08), SC61A_DICDI (Q54XK2), 
SC61A_DISMA (Q7T277), SC61A_GADOC (Q8AY32), SC61A_HALRO (Q25147), 
SC61A_HANAN (Q96TW8), SC61A_HARAN (Q7T278), SC61A_HEMAM (Q8AY34), 
SC61A_KLULA (Q6CPY9), SC61A_NEUCR (Q870W0), SC61A_NOTAN (Q8AY35), 
SC61A_PAGBO (Q8AY36), SC61A_PYRSA (P38379), SC61A_SCHPO (P79088), 
SC61A_YARLI (P78979), SC61A_YEAST (P32915), SCY1_ARATH  (Q38885), 
SECY1_LACKZ (F6CD01), SECY_AERPE  (Q9YDD0), SECY_ANTSP  (Q37143), 
SECY_AQUAE  (O66491), SECY_ARCFU  (O28377), SECY_BACHD  (P38375), 
SECY_BACLD  (Q05207), SECY_BACSU  (P16336), SECY_BORBU  (O51451), 
SECY_BUCAI  (P57571), SECY_BUCAK  (P49976), SECY_BUCAP  (Q8K969), 
SECY_BUCBP  (Q89A85), SECY_CHLMU  (Q9PJN1), SECY_CHLPN  (Q9Z7S5), 
SECY_CHLTR  (P28539), SECY_CORGL  (P38376), SECY_CYACA  (P46249), 
SECY_CYAPA  (P25014), SECY_ECO57  (P0AGA4), SECY_ECOL6  (P0AGA3), 
SECY_ECOLI  (P0AGA2), SECY_GUITH  (P28527), SECY_HAEIN  (P43804), 
SECY_HALMA  (P28542), SECY_HALSA  (Q9HPB1), SECY_HALVD  (Q977V3), 
SECY_HELPJ  (Q9ZJS9), SECY_HELPY  (O25879), SECY_LACLA  (P58118), 
SECY_LACLC  (P27148), SECY_MAIZE  (O63066), SECY_METJA  (Q60175), 
SECY_METTH  (O26134), SECY_METVA  (P28541), SECY_MICLU  (P33108), 
SECY_MYCBO  (P0A5Z3), SECY_MYCCT  (P10250), SECY_MYCGA  (O52351), 
SECY_MYCGE  (P47416), SECY_MYCLE  (O33006), SECY_MYCPN  (Q59548), 
SECY_MYCTO  (P9WGN2), SECY_MYCTU  (P9WGN3), SECY_ODOSI  (P49461), 
SECY_ORYSJ  (Q6ZG25), SECY_PAVLU  (P28540), SECY_PEA    (Q9XQU4), 
SECY_PORPU  (P51297), SECY_PSEAE  (Q9HWF5), SECY_PYRAB  (Q9V1V8), 
SECY_PYRFU  (Q8U019), SECY_PYRHO  (O59442), SECY_PYRSA  (P38397), 
SECY_PYRYE  (Q1XDJ1), SECY_RICBR  (Q1RHP1), SECY_RICCN  (Q92GY6), 
SECY_RICFE  (Q4UMQ9), SECY_RICPR  (Q9ZCS5), SECY_RICTY  (Q68W98), 
SECY_SHIFL  (P0AGA5), SECY_SPIOL  (P93690), SECY_STAA8  (O08387), 
SECY_STAAC  (Q5HDX8), SECY_STAAM  (Q99S39), SECY_STAAN  (Q7A468), 
SECY_STAAR  (Q6GEK3), SECY_STAAS  (Q6G791), SECY_STAAW  (Q7A086), 
SECY_STACT  (Q05217), SECY_STAEQ  (Q5HM19), SECY_STAES  (Q8CNF3), 
SECY_STRCO  (P46785), SECY_STRGB  (Q59912), SECY_STRGC  (A8AZK5), 
SECY_STRGR  (Q59916), SECY_STRLI  (P49977), SECY_STRSC  (P43416), 
SECY_STRSV  (A3CK84), SECY_SULAC  (P49978), SECY_SULSO  (Q9UX84), 
SECY_SYNE7  (P0A4H0), SECY_SYNP6  (P0A4H1), SECY_SYNY3  (P77964), 
SECY_THEMA  (Q9X1I9), SECY_VAULI  (B7T1W7), SECY_VIBCH  (P78283), 
SSH1_YEAST  (P38353)
» More

UniProtKB/Swiss-Prot
False negative sequences
5 sequences

SECY2_LACKZ (F6CFW7), SECY_CYAME  (Q85FU6), SECY_EMIHU  (Q4G351), 
SECY_HETA2  (B2XTD8), SECY_THET8  (Q5SHQ8)
» More

UniProtKB/Swiss-Prot
'Partial' sequences
2 sequences

SECY_GEOSE  (P28620), SECY_PARDE  (P72179)

		
PDB
[Detailed view]
22 PDB

1RH5; 1RHZ; 1VVK; 2AKH; 2AKI; 2WW9; 2WWA; 2WWB; 2YXQ; 2YXR; 3BO0; 3BO1; 3DIN; 3DKN; 3DL8; 3J01; 3J45; 3J46; 3KCR; 4CG5; 4CG6; 4CG7
» More

View entry in original PROSITE format
View entry in raw text format (no links)
Direct ScanProsite submission